Wall clock time and date at job start Tue Mar 31 2020 10:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46890 * 109.47180 * 2 1 4 4 C 1.46900 * 111.00325 * 71.49832 * 3 2 1 5 5 C 1.50701 * 109.46942 * 285.08066 * 4 3 2 6 6 H 1.07997 * 119.99999 * 358.00097 * 5 4 3 7 7 C 1.37881 * 119.99757 * 178.00427 * 5 4 3 8 8 N 1.31517 * 119.99899 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00048 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47153 * 59.99603 * 9 7 5 11 11 H 1.48495 * 109.47258 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46850 * 300.00334 * 9 7 5 13 13 C 1.46901 * 111.00198 * 195.45307 * 3 2 1 14 14 C 1.50706 * 109.46883 * 66.04630 * 13 3 2 15 15 C 1.38465 * 120.01816 * 90.00427 * 14 13 3 16 16 F 1.35096 * 120.01958 * 0.02562 * 15 14 13 17 17 C 1.38439 * 119.95488 * 180.02562 * 15 14 13 18 18 C 1.38220 * 120.00132 * 359.97438 * 17 15 14 19 19 C 1.38210 * 120.03243 * 0.02562 * 18 17 15 20 20 C 1.38263 * 120.01497 * 269.72247 * 14 13 3 21 21 Br 1.89108 * 119.99907 * 359.97438 * 20 14 13 22 22 H 1.09000 * 109.46891 * 50.54811 * 1 2 3 23 23 H 1.09004 * 109.46701 * 170.54393 * 1 2 3 24 24 H 1.08999 * 109.47253 * 290.54395 * 1 2 3 25 25 H 1.09004 * 109.46910 * 239.99588 * 2 1 3 26 26 H 1.09000 * 109.47198 * 120.00138 * 2 1 3 27 27 H 1.08997 * 109.46814 * 45.07715 * 4 3 2 28 28 H 1.08997 * 109.47555 * 165.08167 * 4 3 2 29 29 H 0.97004 * 119.99436 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47271 * 186.04144 * 13 3 2 31 31 H 1.09000 * 109.47344 * 306.04721 * 13 3 2 32 32 H 1.08003 * 119.99894 * 179.97438 * 17 15 14 33 33 H 1.07993 * 119.98966 * 180.02562 * 18 17 15 34 34 H 1.08002 * 119.98121 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7849 2.0264 1.3005 5 6 0.3233 2.3680 1.4355 6 1 -0.3568 2.1617 0.6224 7 6 -0.1455 2.9441 2.5971 8 7 0.6827 3.1950 3.5875 9 14 -1.9573 3.3670 2.7648 10 1 -2.7691 2.1315 2.6240 11 1 -2.2032 3.9710 4.0989 12 1 -2.3400 4.3341 1.7048 13 6 3.4414 1.4406 -0.3654 14 6 3.6097 1.0009 -1.7970 15 6 3.5490 1.9325 -2.8196 16 9 3.3394 3.2363 -2.5345 17 6 3.7032 1.5270 -4.1342 18 6 3.9182 0.1930 -4.4253 19 6 3.9787 -0.7367 -3.4045 20 6 3.8306 -0.3323 -2.0896 21 35 3.9224 -1.6042 -0.6931 22 1 -0.3633 0.6530 -0.7935 23 1 -0.3633 -1.0138 -0.1688 24 1 -0.3634 0.3606 0.9623 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.0737 1.3438 2.0997 28 1 2.3788 2.9378 1.3687 29 1 0.3529 3.6007 4.4045 30 1 3.8054 2.4620 -0.2540 31 1 4.0106 0.7787 0.2873 32 1 3.6556 2.2530 -4.9324 33 1 4.0389 -0.1231 -5.4509 34 1 4.1472 -1.7788 -3.6328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093178329.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:54 Heat of formation + Delta-G solvation = -21.073207 kcal Electronic energy + Delta-G solvation = -18847.359723 eV Core-core repulsion = 15740.683744 eV Total energy + Delta-G solvation = -3106.675979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.033 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.89856 -40.50757 -38.42620 -34.85102 -33.53044 -32.82559 -31.10777 -30.27160 -29.12943 -26.29646 -24.35954 -23.50316 -22.83479 -21.48944 -18.69981 -18.28631 -17.69964 -17.13185 -16.84833 -16.52203 -16.22075 -15.46233 -15.35939 -15.11166 -14.53989 -14.25249 -14.08915 -13.87486 -13.56648 -13.15920 -13.00509 -12.84528 -12.73178 -12.46323 -12.28761 -12.16581 -11.99410 -11.71568 -11.35853 -11.22115 -10.78116 -10.50912 -9.87303 -9.67974 -9.02341 -8.15665 -6.21666 -0.08018 0.07903 0.50856 1.41133 1.44244 1.51730 2.37723 2.44835 3.15962 3.27820 3.33868 3.56527 3.78449 3.92051 4.23885 4.31190 4.39218 4.43907 4.57593 4.63654 4.81414 4.93662 4.99665 5.07653 5.09061 5.13757 5.20730 5.21759 5.35695 5.65354 5.72798 5.76455 6.08520 6.36229 6.58041 6.90178 7.43964 8.95217 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.005382 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.225381 B = 5201.318445 C = 6052.952286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.063 3.937 3 N -0.532 5.532 4 C 0.210 3.790 5 C -0.509 4.509 6 H 0.076 0.924 7 C -0.002 4.002 8 N -0.938 5.938 9 Si 0.963 3.037 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.083 3.917 14 C -0.097 4.097 15 C 0.095 3.905 16 F -0.146 7.146 17 C -0.133 4.133 18 C -0.074 4.074 19 C -0.096 4.096 20 C -0.078 4.078 21 Br -0.040 7.040 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.016 0.984 27 H -0.033 1.033 28 H -0.004 1.004 29 H 0.262 0.738 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.578 -11.460 -17.565 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 N -0.256 5.256 4 C 0.084 3.916 5 C -0.547 4.547 6 H 0.094 0.906 7 C -0.199 4.199 8 N -0.579 5.579 9 Si 0.788 3.212 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.195 1.195 13 C -0.045 4.045 14 C -0.100 4.100 15 C 0.075 3.925 16 F -0.124 7.124 17 C -0.152 4.152 18 C -0.092 4.092 19 C -0.115 4.115 20 C -0.158 4.158 21 Br 0.046 6.954 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.035 0.965 27 H -0.016 1.016 28 H 0.014 0.986 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.184 0.816 33 H 0.204 0.796 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.349 -11.560 -17.181 22.327 hybrid contribution -0.293 0.810 1.373 1.621 sum 8.055 -10.750 -15.807 20.744 Atomic orbital electron populations 1.21983 0.95325 1.00209 1.02572 1.22339 0.96504 0.88224 0.99443 1.62203 1.13792 1.17503 1.32147 1.19421 0.96677 0.91806 0.83677 1.21613 0.94070 1.38538 1.00493 0.90575 1.25887 1.02495 0.95923 0.95567 1.70098 1.36809 1.44914 1.06115 0.85525 0.79713 0.78869 0.77095 1.18974 1.21095 1.19548 1.21010 0.91131 1.00782 0.91611 1.19705 1.01891 0.92868 0.95545 1.17778 1.02705 0.77813 0.94241 1.91492 1.92375 1.33954 1.94608 1.21643 1.00607 0.99199 0.93731 1.21476 0.96078 0.90410 1.01245 1.21535 0.98390 1.02467 0.89150 1.21771 1.07574 0.91663 0.94813 1.96694 1.96922 1.53291 1.48445 0.93508 0.91916 0.92392 0.90186 0.96549 1.01571 0.98635 0.92943 0.91669 0.93461 0.81583 0.79636 0.81598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.80 8.51 71.98 0.61 -5.19 16 2 C 0.06 2.55 4.16 86.31 0.36 2.90 16 3 N -0.53 -24.40 4.48 -905.38 -4.05 -28.45 16 4 C 0.21 11.66 4.75 85.56 0.41 12.07 16 5 C -0.51 -29.22 6.97 25.60 0.18 -29.04 16 6 H 0.08 4.25 5.65 -2.91 -0.02 4.23 16 7 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 8 N -0.94 -57.82 13.29 21.45 0.28 -57.54 16 9 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 10 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.08 3.29 4.71 85.56 0.40 3.69 16 14 C -0.10 -3.11 4.93 -19.80 -0.10 -3.21 16 15 C 0.10 2.83 7.24 22.37 0.16 3.00 16 16 F -0.15 -5.14 16.48 44.97 0.74 -4.40 16 17 C -0.13 -2.62 10.03 22.31 0.22 -2.40 16 18 C -0.07 -1.06 10.04 22.26 0.22 -0.83 16 19 C -0.10 -1.72 9.79 22.29 0.22 -1.50 16 20 C -0.08 -2.05 5.15 22.31 0.11 -1.93 16 21 Br -0.04 -1.05 28.27 -20.37 -0.58 -1.63 16 22 H 0.05 1.91 7.76 -2.39 -0.02 1.89 16 23 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.06 2.71 5.67 -2.39 -0.01 2.69 16 25 H 0.08 2.84 4.10 -2.38 -0.01 2.83 16 26 H 0.02 0.70 7.44 -2.39 -0.02 0.68 16 27 H -0.03 -2.01 7.81 -2.39 -0.02 -2.03 16 28 H 0.00 -0.27 7.75 -2.39 -0.02 -0.29 16 29 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.06 2.76 7.33 -2.39 -0.02 2.74 16 31 H 0.05 1.85 6.61 -2.39 -0.02 1.83 16 32 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.19 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -68.49 295.86 2.80 -65.69 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 1.11 Total: 1.14 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 3.27 Total: -22.07 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -3.77 Total: -85.99 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.74 Total: -4.40 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 35 Polarization: -1.05 SS G_CDS: -0.58 Total: -1.63 kcal Total: -68.49 2.80 -65.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093178329.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.612 kcal (2) G-P(sol) polarization free energy of solvation -68.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds