Wall clock time and date at job start Tue Mar 31 2020 11:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99975 * 2 1 4 4 H 1.48507 * 109.46903 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47162 * 299.99709 * 3 2 1 6 6 H 1.48494 * 109.47541 * 60.00009 * 3 2 1 7 7 C 1.37875 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00065 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00225 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47143 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47009 * 179.97438 * 10 9 7 12 12 S 1.81411 * 109.47172 * 180.02562 * 11 10 9 13 13 O 1.42101 * 110.53954 * 63.03437 * 12 11 10 14 14 O 1.42094 * 110.54076 * 286.28470 * 12 11 10 15 15 O 1.52198 * 104.44973 * 174.66150 * 12 11 10 16 16 C 1.35898 * 114.00017 * 74.69212 * 15 12 11 17 17 C 1.38755 * 120.05896 * 275.85732 * 16 15 12 18 18 C 1.38120 * 119.94509 * 179.97438 * 17 16 15 19 19 C 1.38282 * 120.05547 * 359.97438 * 18 17 16 20 20 C 1.38244 * 120.11575 * 359.97438 * 19 18 17 21 21 C 1.38170 * 120.05269 * 0.02562 * 20 19 18 22 22 N 1.47997 * 120.02903 * 180.02562 * 21 20 19 23 23 O 1.21803 * 120.00046 * 5.87456 * 22 21 20 24 24 O 1.21802 * 120.00070 * 185.87425 * 22 21 20 25 25 H 0.97000 * 120.00237 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46909 * 59.99349 * 9 7 2 27 27 H 1.09000 * 109.46796 * 299.99498 * 9 7 2 28 28 H 1.09004 * 109.47339 * 60.00116 * 10 9 7 29 29 H 1.08997 * 109.47445 * 300.00190 * 10 9 7 30 30 H 1.08992 * 109.47385 * 60.00367 * 11 10 9 31 31 H 1.09007 * 109.47370 * 299.99871 * 11 10 9 32 32 H 1.08003 * 120.02793 * 359.95562 * 17 16 15 33 33 H 1.08003 * 119.96765 * 179.72469 * 18 17 16 34 34 H 1.08008 * 119.94418 * 179.97438 * 19 18 17 35 35 H 1.07989 * 119.97714 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 16 2.6590 -6.3660 0.0019 13 8 3.4415 -6.3522 1.1880 14 8 3.2666 -6.5031 -1.2752 15 8 1.7903 -7.6081 0.1397 16 6 1.1221 -7.9439 -0.9950 17 6 -0.0903 -7.3383 -1.2927 18 6 -0.7672 -7.6810 -2.4468 19 6 -0.2373 -8.6264 -3.3057 20 6 0.9710 -9.2305 -3.0121 21 6 1.6520 -8.8912 -1.8588 22 7 2.9458 -9.5379 -1.5452 23 8 3.4630 -10.2887 -2.3530 24 8 3.4934 -9.3193 -0.4794 25 1 -0.4850 0.8400 0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8904 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6043 -0.8894 30 1 0.8533 -5.0451 -0.8885 31 1 0.8537 -5.0446 0.8914 32 1 -0.5045 -6.5998 -0.6222 33 1 -1.7131 -7.2131 -2.6766 34 1 -0.7684 -8.8933 -4.2075 35 1 1.3825 -9.9688 -3.6842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104104609.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:36 Heat of formation + Delta-G solvation = -84.635449 kcal Electronic energy + Delta-G solvation = -24396.103733 eV Core-core repulsion = 20490.770090 eV Total energy + Delta-G solvation = -3905.333642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.070 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.64600 -41.23464 -38.85919 -37.23804 -36.66342 -36.11403 -34.88995 -32.66831 -32.29016 -31.31043 -28.05326 -26.91597 -24.52259 -23.77561 -23.11026 -21.36495 -20.62484 -19.54952 -18.92501 -18.54723 -18.05972 -17.53349 -17.42892 -16.45275 -16.21200 -15.81779 -15.56570 -14.95759 -14.56215 -14.39605 -13.92783 -13.60778 -13.08739 -12.83021 -12.66700 -12.45560 -12.24411 -12.21816 -12.10242 -12.00372 -11.75149 -11.43132 -11.30969 -11.26042 -11.00715 -10.97144 -10.49915 -10.25195 -10.08957 -9.87032 -9.51515 -9.23339 -8.49397 -6.14397 -4.17545 -0.71265 -0.13614 0.39647 0.96887 1.07274 1.82448 2.58380 3.24466 3.32426 3.37407 3.54136 3.55196 3.79485 3.96768 4.11491 4.23447 4.28260 4.35684 4.66330 4.85667 4.86747 4.97799 5.17376 5.22605 5.31786 5.40072 5.62275 5.70787 6.09642 6.13603 6.25679 6.71425 7.43148 7.44715 7.53449 7.83243 8.22740 8.88563 9.47951 10.96857 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.021718 B = 0.003558 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.963588 B = 7868.149056 C = 8603.486132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.104 4.104 11 C -0.634 4.634 12 S 2.578 3.422 13 O -0.908 6.908 14 O -0.956 6.956 15 O -0.657 6.657 16 C 0.150 3.850 17 C -0.141 4.141 18 C -0.044 4.044 19 C -0.107 4.107 20 C -0.040 4.040 21 C -0.030 4.030 22 N 0.033 4.967 23 O -0.145 6.145 24 O -0.149 6.149 25 H 0.261 0.739 26 H 0.021 0.979 27 H 0.022 0.978 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 -19.018 -7.017 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.143 4.143 11 C -0.764 4.764 12 S 2.676 3.324 13 O -0.906 6.906 14 O -0.955 6.955 15 O -0.614 6.614 16 C 0.106 3.894 17 C -0.161 4.161 18 C -0.063 4.063 19 C -0.127 4.127 20 C -0.059 4.059 21 C -0.116 4.116 22 N 0.555 4.445 23 O -0.363 6.363 24 O -0.366 6.366 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.157 0.843 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.177 0.823 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.904 -19.090 -6.949 21.156 hybrid contribution 0.267 1.280 0.297 1.341 sum -5.637 -17.810 -6.652 19.830 Atomic orbital electron populations 1.69955 1.06110 1.26788 1.50580 1.25009 0.94902 0.99435 0.94950 0.86484 0.80241 0.83356 0.77672 1.19534 1.20907 1.20868 1.21272 0.93368 0.90748 1.51163 0.92209 1.19082 0.93466 0.90372 0.97814 1.21533 0.99446 0.90852 1.02464 1.30943 1.16834 1.16921 1.11665 1.06152 0.76169 0.75093 0.74983 1.93636 1.64649 1.84360 1.47920 1.93611 1.74732 1.83674 1.43448 1.85892 1.68794 1.64336 1.42377 1.17714 0.92596 0.96521 0.82523 1.21759 0.92503 1.01921 0.99950 1.21592 0.99717 0.93804 0.91139 1.21454 0.94503 0.95798 1.00901 1.21152 0.93772 0.98232 0.92719 1.21322 0.88311 1.02274 0.99659 1.43240 1.01583 0.99363 1.00350 1.94513 1.65685 1.31869 1.44248 1.94616 1.63779 1.66530 1.11631 0.92891 0.96085 0.95918 0.90956 0.91398 0.85168 0.84332 0.81357 0.82077 0.82276 0.81533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.42 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 10 C -0.10 -2.02 5.16 -26.74 -0.14 -2.16 16 11 C -0.63 -9.36 5.06 37.16 0.19 -9.17 16 12 S 2.58 42.56 4.69 -107.50 -0.50 42.05 16 13 O -0.91 -17.83 18.09 -67.04 -1.21 -19.05 16 14 O -0.96 -17.54 16.10 -67.60 -1.09 -18.63 16 15 O -0.66 -9.63 8.29 -54.88 -0.45 -10.09 16 16 C 0.15 1.85 4.70 -39.21 -0.18 1.67 16 17 C -0.14 -1.15 8.42 -39.43 -0.33 -1.48 16 18 C -0.04 -0.23 10.04 -39.61 -0.40 -0.62 16 19 C -0.11 -0.51 10.04 -39.56 -0.40 -0.91 16 20 C -0.04 -0.31 9.55 -39.60 -0.38 -0.69 16 21 C -0.03 -0.38 6.28 -79.81 -0.50 -0.88 16 22 N 0.03 0.52 4.42 34.03 0.15 0.67 16 23 O -0.14 -2.14 18.46 -29.46 -0.54 -2.68 16 24 O -0.15 -2.70 16.45 -37.00 -0.61 -3.30 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.13 1.57 6.51 -51.93 -0.34 1.23 16 31 H 0.14 1.72 8.14 -51.92 -0.42 1.30 16 32 H 0.17 1.01 6.95 -52.48 -0.36 0.64 16 33 H 0.16 0.27 8.06 -52.48 -0.42 -0.15 16 34 H 0.16 0.16 8.06 -52.48 -0.42 -0.26 16 35 H 0.17 0.94 7.62 -52.49 -0.40 0.54 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -36.92 323.40 -9.97 -46.88 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: -3.60 Total: -4.98 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -2.69 Total: -26.85 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.89 Total: -24.31 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -3.91 Total: -53.75 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 42.56 SS G_CDS: -0.50 Total: 42.05 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.92 -9.97 -46.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104104609.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.752 kcal (2) G-P(sol) polarization free energy of solvation -36.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds