Wall clock time and date at job start Tue Mar 31 2020 11:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99909 * 2 1 4 4 H 1.48507 * 109.46870 * 269.99347 * 3 2 1 5 5 H 1.48497 * 109.47187 * 29.99014 * 3 2 1 6 6 H 1.48496 * 109.47475 * 149.99638 * 3 2 1 7 7 C 1.37876 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46990 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47235 * 179.97438 * 11 10 9 13 13 O 1.42105 * 110.54275 * 68.37271 * 12 11 10 14 14 O 1.42101 * 110.54298 * 291.62373 * 12 11 10 15 15 O 1.52200 * 104.44908 * 179.97438 * 12 11 10 16 16 C 1.35900 * 113.99669 * 75.00458 * 15 12 11 17 17 C 1.38759 * 120.05215 * 269.72183 * 16 15 12 18 18 C 1.38118 * 119.94261 * 179.79158 * 17 16 15 19 19 C 1.38294 * 120.05879 * 0.48440 * 18 17 16 20 20 C 1.38241 * 120.10823 * 359.74912 * 19 18 17 21 21 N 1.48002 * 119.97137 * 180.02562 * 20 19 18 22 22 O 1.21803 * 120.00167 * 180.02562 * 21 20 19 23 23 O 1.21793 * 120.00338 * 0.02562 * 21 20 19 24 24 C 1.38167 * 120.05551 * 0.02562 * 20 19 18 25 25 H 0.96996 * 119.99810 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47240 * 59.99562 * 9 7 2 27 27 H 1.09000 * 109.46699 * 299.99500 * 9 7 2 28 28 H 1.08995 * 109.47375 * 59.99731 * 10 9 7 29 29 H 1.09000 * 109.47020 * 299.99390 * 10 9 7 30 30 H 1.09004 * 109.47149 * 59.99749 * 11 10 9 31 31 H 1.09000 * 109.46805 * 299.99601 * 11 10 9 32 32 H 1.08001 * 120.02869 * 0.02562 * 17 16 15 33 33 H 1.08004 * 119.97485 * 180.22505 * 18 17 16 34 34 H 1.07998 * 119.94714 * 179.76132 * 19 18 17 35 35 H 1.08005 * 120.02802 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 16 2.6592 -6.3659 0.0004 13 8 3.3569 -6.4261 1.2369 14 8 3.3550 -6.4263 -1.2371 15 8 1.7857 -7.6123 0.0018 16 6 1.2042 -7.8810 -1.1968 17 6 -0.0454 -7.3572 -1.4958 18 6 -0.6325 -7.6282 -2.7163 19 6 0.0197 -8.4290 -3.6360 20 6 1.2626 -8.9560 -3.3386 21 7 1.9580 -9.8122 -4.3254 22 8 3.0530 -10.2772 -4.0637 23 8 1.4356 -10.0519 -5.3991 24 6 1.8561 -8.6841 -2.1209 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8721 -3.6042 0.8904 29 1 2.8720 -3.6043 -0.8895 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0446 0.8914 32 1 -0.5570 -6.7350 -0.7763 33 1 -1.6035 -7.2178 -2.9510 34 1 -0.4427 -8.6429 -4.5883 35 1 2.8274 -9.0957 -1.8891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104104793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:58 Heat of formation + Delta-G solvation = -87.938958 kcal Electronic energy + Delta-G solvation = -23683.947887 eV Core-core repulsion = 19778.470994 eV Total energy + Delta-G solvation = -3905.476893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.070 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.59354 -41.56237 -38.78533 -37.33433 -36.88761 -36.23447 -34.91458 -32.68754 -32.29433 -31.32831 -28.12159 -27.06881 -24.41110 -24.04293 -23.10606 -21.44749 -20.63010 -19.62755 -19.05460 -18.19587 -17.87946 -17.60542 -17.51515 -17.24518 -16.47965 -15.84063 -15.55122 -14.85015 -14.58465 -14.45001 -13.91510 -13.73553 -13.09349 -12.76743 -12.74899 -12.50866 -12.37557 -12.33278 -12.21046 -12.05021 -11.87501 -11.52797 -11.45154 -11.43242 -11.03501 -10.99871 -10.54958 -10.28627 -10.11020 -9.90224 -9.53900 -9.27063 -8.51049 -6.16308 -4.19761 -0.70697 -0.27945 0.38731 0.84592 0.93731 1.80531 2.53111 3.23872 3.30529 3.34232 3.44959 3.64173 3.78967 3.91384 3.98234 4.14594 4.25884 4.33535 4.61832 4.81529 4.85590 4.98071 5.16104 5.20603 5.22640 5.27370 5.59324 5.69785 5.99598 6.06581 6.22158 6.68526 7.28881 7.42203 7.50982 7.80959 8.20304 8.86129 9.45814 10.94846 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.003172 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.919818 B = 8825.764193 C = 9359.991326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.104 4.104 11 C -0.629 4.629 12 S 2.574 3.426 13 O -0.920 6.920 14 O -0.952 6.952 15 O -0.664 6.664 16 C 0.080 3.920 17 C -0.079 4.079 18 C -0.094 4.094 19 C -0.042 4.042 20 C -0.029 4.029 21 N 0.028 4.972 22 O -0.149 6.149 23 O -0.149 6.149 24 C -0.034 4.034 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.144 -18.129 -4.901 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.143 4.143 11 C -0.759 4.759 12 S 2.673 3.327 13 O -0.918 6.918 14 O -0.950 6.950 15 O -0.622 6.622 16 C 0.038 3.962 17 C -0.099 4.099 18 C -0.113 4.113 19 C -0.062 4.062 20 C -0.112 4.112 21 N 0.550 4.450 22 O -0.366 6.366 23 O -0.367 6.367 24 C -0.055 4.055 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.147 0.853 31 H 0.157 0.843 32 H 0.183 0.817 33 H 0.185 0.815 34 H 0.184 0.816 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.013 -18.116 -4.199 19.024 hybrid contribution 0.177 1.212 -0.003 1.225 sum -3.836 -16.904 -4.202 17.836 Atomic orbital electron populations 1.69944 1.06109 1.26925 1.50400 1.25011 0.94906 0.99438 0.94928 0.86538 0.79902 0.83030 0.78258 1.20515 1.21113 1.19687 1.21226 0.93300 0.90782 1.51395 0.92296 1.19069 0.93458 0.90373 0.97794 1.21531 0.99445 0.90954 1.02396 1.30825 1.16662 1.16713 1.11681 1.06170 0.76226 0.75422 0.74876 1.93643 1.69061 1.84412 1.44714 1.93644 1.71412 1.84296 1.45672 1.85831 1.72468 1.64549 1.39304 1.17572 0.93851 1.02515 0.82300 1.22014 0.92521 0.97053 0.98313 1.21175 1.01409 0.97172 0.91502 1.21333 0.91007 0.92409 1.01435 1.20807 0.96262 1.02806 0.91359 1.43436 1.00703 0.99605 1.01268 1.94594 1.06091 1.52472 1.83487 1.94547 1.68570 1.63186 1.10363 1.21059 1.00971 0.93594 0.89881 0.92811 0.96101 0.95973 0.91155 0.91256 0.85303 0.84348 0.81679 0.81494 0.81650 0.81289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.25 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.74 4.97 -27.89 -0.14 0.60 16 10 C -0.10 -1.93 5.16 -26.73 -0.14 -2.07 16 11 C -0.63 -8.45 5.47 37.16 0.20 -8.24 16 12 S 2.57 35.94 5.17 -107.50 -0.56 35.38 16 13 O -0.92 -15.80 18.09 -67.04 -1.21 -17.02 16 14 O -0.95 -15.11 16.26 -67.03 -1.09 -16.20 16 15 O -0.66 -7.74 10.05 -51.75 -0.52 -8.26 16 16 C 0.08 0.83 4.79 -39.22 -0.19 0.64 16 17 C -0.08 -0.57 8.47 -39.43 -0.33 -0.90 16 18 C -0.09 -0.51 10.04 -39.61 -0.40 -0.91 16 19 C -0.04 -0.29 9.55 -39.56 -0.38 -0.67 16 20 C -0.03 -0.30 6.85 -79.98 -0.55 -0.84 16 21 N 0.03 0.34 4.45 33.95 0.15 0.49 16 22 O -0.15 -1.98 18.45 -29.46 -0.54 -2.52 16 23 O -0.15 -1.78 18.44 -29.46 -0.54 -2.32 16 24 C -0.03 -0.37 8.56 -39.43 -0.34 -0.71 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.13 1.41 6.63 -51.92 -0.34 1.07 16 31 H 0.14 1.57 8.14 -51.92 -0.42 1.15 16 32 H 0.17 0.77 7.52 -52.49 -0.39 0.37 16 33 H 0.17 0.33 8.06 -52.48 -0.42 -0.09 16 34 H 0.17 0.77 7.60 -52.49 -0.40 0.37 16 35 H 0.17 1.80 7.61 -52.48 -0.40 1.41 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -34.66 327.68 -9.94 -44.60 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: -3.62 Total: -4.06 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -2.67 Total: -26.14 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.89 Total: -24.29 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -3.91 Total: -46.32 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 35.94 SS G_CDS: -0.56 Total: 35.38 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.66 -9.94 -44.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104104793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.335 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds