Wall clock time and date at job start Tue Mar 31 2020 11:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99909 * 2 1 4 4 H 1.48507 * 109.46870 * 269.99347 * 3 2 1 5 5 H 1.48497 * 109.47187 * 29.99014 * 3 2 1 6 6 H 1.48496 * 109.47475 * 149.99638 * 3 2 1 7 7 C 1.37876 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46990 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47235 * 179.97438 * 11 10 9 13 13 O 1.42105 * 110.54275 * 68.37271 * 12 11 10 14 14 O 1.42101 * 110.54298 * 291.62373 * 12 11 10 15 15 O 1.52200 * 104.44908 * 179.97438 * 12 11 10 16 16 C 1.35900 * 113.99669 * 75.00458 * 15 12 11 17 17 C 1.38759 * 120.05215 * 269.72183 * 16 15 12 18 18 C 1.38118 * 119.94261 * 179.79158 * 17 16 15 19 19 C 1.38294 * 120.05879 * 0.48440 * 18 17 16 20 20 C 1.38241 * 120.10823 * 359.74912 * 19 18 17 21 21 N 1.48002 * 119.97137 * 180.02562 * 20 19 18 22 22 O 1.21803 * 120.00167 * 180.02562 * 21 20 19 23 23 O 1.21793 * 120.00338 * 0.02562 * 21 20 19 24 24 C 1.38167 * 120.05551 * 0.02562 * 20 19 18 25 25 H 0.96996 * 119.99810 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47240 * 59.99562 * 9 7 2 27 27 H 1.09000 * 109.46699 * 299.99500 * 9 7 2 28 28 H 1.08995 * 109.47375 * 59.99731 * 10 9 7 29 29 H 1.09000 * 109.47020 * 299.99390 * 10 9 7 30 30 H 1.09004 * 109.47149 * 59.99749 * 11 10 9 31 31 H 1.09000 * 109.46805 * 299.99601 * 11 10 9 32 32 H 1.08001 * 120.02869 * 0.02562 * 17 16 15 33 33 H 1.08004 * 119.97485 * 180.22505 * 18 17 16 34 34 H 1.07998 * 119.94714 * 179.76132 * 19 18 17 35 35 H 1.08005 * 120.02802 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 16 2.6592 -6.3659 0.0004 13 8 3.3569 -6.4261 1.2369 14 8 3.3550 -6.4263 -1.2371 15 8 1.7857 -7.6123 0.0018 16 6 1.2042 -7.8810 -1.1968 17 6 -0.0454 -7.3572 -1.4958 18 6 -0.6325 -7.6282 -2.7163 19 6 0.0197 -8.4290 -3.6360 20 6 1.2626 -8.9560 -3.3386 21 7 1.9580 -9.8122 -4.3254 22 8 3.0530 -10.2772 -4.0637 23 8 1.4356 -10.0519 -5.3991 24 6 1.8561 -8.6841 -2.1209 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8721 -3.6042 0.8904 29 1 2.8720 -3.6043 -0.8895 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0446 0.8914 32 1 -0.5570 -6.7350 -0.7763 33 1 -1.6035 -7.2178 -2.9510 34 1 -0.4427 -8.6429 -4.5883 35 1 2.8274 -9.0957 -1.8891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104104793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:58 Heat of formation + Delta-G solvation = -110.618189 kcal Electronic energy + Delta-G solvation = -23684.931332 eV Core-core repulsion = 19778.470994 eV Total energy + Delta-G solvation = -3906.460338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.070 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.44949 -42.40968 -39.51614 -38.52994 -37.80261 -37.43798 -36.53946 -34.24340 -33.26717 -32.01205 -29.78881 -27.90593 -25.79979 -25.10398 -23.92256 -22.63672 -21.90789 -20.54162 -19.95505 -19.27892 -18.81576 -18.73246 -18.43891 -18.15355 -17.84528 -16.89047 -16.68312 -16.46200 -15.79096 -15.32746 -14.74107 -14.62867 -14.47787 -14.15238 -13.81822 -13.65321 -13.53052 -13.43738 -13.39799 -13.16971 -13.05241 -12.79803 -12.77938 -12.68031 -12.39439 -12.37141 -12.21742 -11.77893 -11.39119 -11.13842 -10.89962 -10.56441 -10.52678 -8.23132 -6.32690 -1.47774 -1.27550 -0.36378 0.06292 0.14049 0.84909 1.40489 1.41560 1.51967 1.91070 2.35327 2.41614 2.67847 3.11382 3.13545 3.18154 3.29945 3.52030 3.60507 3.70925 3.76793 4.01104 4.32999 4.38704 4.48176 4.60077 4.69304 4.75107 4.83528 4.99229 5.03815 5.24698 5.46219 5.64126 5.79839 6.20228 6.34680 6.82587 7.36604 8.87909 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.003172 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.919818 B = 8825.764193 C = 9359.991326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.057 0.943 9 C 0.032 3.968 10 C -0.106 4.106 11 C -0.621 4.621 12 S 2.596 3.404 13 O -0.960 6.960 14 O -0.977 6.977 15 O -0.656 6.656 16 C 0.049 3.951 17 C -0.071 4.071 18 C -0.075 4.075 19 C -0.028 4.028 20 C -0.048 4.048 21 N 0.028 4.972 22 O -0.205 6.205 23 O -0.130 6.130 24 C -0.054 4.054 25 H 0.265 0.735 26 H 0.011 0.989 27 H 0.008 0.992 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.197 0.803 33 H 0.216 0.784 34 H 0.194 0.806 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.372 -17.557 -5.602 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.145 4.145 11 C -0.751 4.751 12 S 2.696 3.304 13 O -0.958 6.958 14 O -0.975 6.975 15 O -0.615 6.615 16 C 0.006 3.994 17 C -0.090 4.090 18 C -0.093 4.093 19 C -0.047 4.047 20 C -0.131 4.131 21 N 0.546 4.454 22 O -0.410 6.410 23 O -0.356 6.356 24 C -0.076 4.076 25 H 0.074 0.926 26 H 0.030 0.970 27 H 0.027 0.973 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.177 0.823 31 H 0.182 0.818 32 H 0.214 0.786 33 H 0.233 0.767 34 H 0.211 0.789 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.126 -17.573 -4.840 19.229 hybrid contribution 0.679 0.999 0.120 1.214 sum -5.447 -16.573 -4.720 18.073 Atomic orbital electron populations 1.70034 1.07368 1.27842 1.51324 1.25823 0.95776 1.02858 0.94671 0.85572 0.78753 0.79020 0.78495 1.19824 1.20649 1.19204 1.21736 0.93705 0.92655 1.51047 0.92429 1.18962 0.93918 0.91198 0.96517 1.21333 0.98823 0.91893 1.02452 1.30703 1.16538 1.13276 1.14602 1.05397 0.75986 0.75523 0.73454 1.93589 1.70670 1.85295 1.46246 1.93606 1.72515 1.84883 1.46517 1.85786 1.72332 1.63231 1.40103 1.17951 0.95326 1.04214 0.81879 1.22535 0.90859 0.96074 0.99561 1.21782 1.02455 0.95260 0.89786 1.21852 0.89229 0.90875 1.02783 1.20981 0.97528 1.03786 0.90778 1.43747 1.00551 0.99549 1.01540 1.94604 1.07474 1.54815 1.84125 1.94497 1.68024 1.62338 1.10732 1.21082 1.00999 0.94625 0.90880 0.92628 0.97019 0.97350 0.91459 0.91219 0.82266 0.81784 0.78554 0.76742 0.78912 0.82860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.46 13.29 21.45 0.28 -52.17 16 2 C 0.01 0.40 5.46 84.65 0.46 0.87 16 3 Si 0.96 42.45 29.54 68.60 2.03 44.48 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -29.71 9.11 25.60 0.23 -29.48 16 8 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.11 -3.83 5.16 30.60 0.16 -3.67 16 11 C -0.62 -15.28 5.47 71.99 0.39 -14.89 16 12 S 2.60 70.98 5.17 -56.49 -0.29 70.68 16 13 O -0.96 -33.23 18.09 -118.57 -2.15 -35.38 16 14 O -0.98 -31.18 16.26 -118.57 -1.93 -33.11 16 15 O -0.66 -14.70 10.05 -61.52 -0.62 -15.32 16 16 C 0.05 0.93 4.79 22.51 0.11 1.03 16 17 C -0.07 -0.72 8.47 22.37 0.19 -0.53 16 18 C -0.07 -0.42 10.04 22.25 0.22 -0.19 16 19 C -0.03 -0.28 9.55 22.28 0.21 -0.07 16 20 C -0.05 -0.91 6.85 36.36 0.25 -0.66 16 21 N 0.03 0.69 4.45 -46.51 -0.21 0.48 16 22 O -0.21 -5.87 18.45 18.88 0.35 -5.52 16 23 O -0.13 -2.97 18.44 18.90 0.35 -2.62 16 24 C -0.05 -1.19 8.56 22.37 0.19 -0.99 16 25 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 26 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.16 2.91 6.63 -2.39 -0.02 2.89 16 31 H 0.16 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.20 0.75 7.52 -2.91 -0.02 0.73 16 33 H 0.22 -0.74 8.06 -2.91 -0.02 -0.76 16 34 H 0.19 0.89 7.60 -2.91 -0.02 0.86 16 35 H 0.15 3.65 7.61 -2.91 -0.02 3.63 16 Total: -1.00 -77.60 327.68 1.51 -76.09 By element: Atomic # 1 Polarization: -1.81 SS G_CDS: 1.13 Total: -0.69 kcal Atomic # 6 Polarization: -49.50 SS G_CDS: 2.57 Total: -46.93 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.08 Total: -51.69 kcal Atomic # 8 Polarization: -87.95 SS G_CDS: -4.00 Total: -91.95 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 70.98 SS G_CDS: -0.29 Total: 70.68 kcal Total: -77.60 1.51 -76.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104104793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.527 kcal (2) G-P(sol) polarization free energy of solvation -77.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds