Wall clock time and date at job start Tue Mar 31 2020 11:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35996 * 117.00012 * 2 1 4 4 C 1.38549 * 120.06702 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.02850 * 179.97438 * 4 3 2 6 6 C 1.38380 * 120.16238 * 0.02562 * 5 4 3 7 7 Cl 1.73608 * 119.92708 * 180.02562 * 6 5 4 8 8 C 1.38294 * 120.14191 * 359.78402 * 6 5 4 9 9 C 1.38720 * 119.97048 * 0.44816 * 8 6 5 10 10 N 1.40117 * 120.08584 * 179.80862 * 9 8 6 11 11 C 1.46506 * 119.99731 * 89.72078 * 10 9 8 12 12 C 1.34773 * 120.00240 * 270.00341 * 10 9 8 13 13 O 1.21293 * 120.00085 * 359.71770 * 12 10 9 14 14 C 1.50702 * 120.00430 * 179.72420 * 12 10 9 15 15 S 1.80991 * 109.47468 * 179.97438 * 14 12 10 16 16 C 1.76194 * 100.00117 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00236 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00259 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99971 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99648 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46967 * 90.00298 * 20 18 16 22 22 H 1.48497 * 109.46934 * 209.99932 * 20 18 16 23 23 H 1.48499 * 109.47157 * 330.00266 * 20 18 16 24 24 H 1.09000 * 109.47562 * 60.00288 * 1 2 3 25 25 H 1.09003 * 109.47302 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47584 * 299.99637 * 1 2 3 27 27 H 1.08005 * 119.98396 * 359.97173 * 4 3 2 28 28 H 1.07996 * 119.91926 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.01879 * 180.23687 * 8 6 5 30 30 H 1.08999 * 109.46892 * 90.00624 * 11 10 9 31 31 H 1.09000 * 109.46803 * 209.99798 * 11 10 9 32 32 H 1.09000 * 109.47214 * 330.00591 * 11 10 9 33 33 H 1.09009 * 109.46564 * 299.99895 * 14 12 10 34 34 H 1.09001 * 109.47030 * 59.99569 * 14 12 10 35 35 H 0.96999 * 119.99595 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3746 0.0005 5 6 1.9216 3.6059 0.0011 6 6 3.3033 3.6813 0.0005 7 17 4.0862 5.2309 0.0019 8 6 4.0619 2.5250 0.0040 9 6 3.4372 1.2864 -0.0014 10 7 4.2035 0.1133 -0.0020 11 6 4.6050 -0.5000 1.2665 12 6 4.5760 -0.4478 -1.1694 13 8 4.2436 0.0599 -2.2196 14 6 5.4053 -1.7060 -1.1701 15 16 5.7391 -2.2078 -2.8767 16 6 6.6959 -3.6588 -2.5875 17 1 6.9039 -3.9758 -1.5762 18 6 7.1832 -4.3940 -3.6593 19 7 7.8984 -5.4776 -3.4431 20 14 6.8240 -3.8453 -5.4084 21 1 7.8972 -2.9284 -5.8698 22 1 6.7708 -5.0327 -6.2985 23 1 5.5186 -3.1385 -5.4473 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2145 2.3190 0.0005 28 1 1.3327 4.5112 0.0019 29 1 5.1401 2.5862 0.0074 30 1 3.8442 -1.2141 1.5816 31 1 5.5559 -1.0164 1.1354 32 1 4.7135 0.2742 2.0261 33 1 6.3477 -1.5202 -0.6547 34 1 4.8615 -2.4999 -0.6580 35 1 8.2387 -5.9915 -4.1922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114284353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:25 Heat of formation + Delta-G solvation = -63.626794 kcal Electronic energy + Delta-G solvation = -21258.449604 eV Core-core repulsion = 17794.736130 eV Total energy + Delta-G solvation = -3463.713474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.89513 -40.34550 -38.72335 -37.36451 -36.46376 -34.67464 -32.38798 -31.16206 -30.10230 -28.22507 -27.86971 -27.57583 -24.15440 -23.32147 -21.18549 -19.75357 -19.17382 -18.34944 -17.83421 -17.66870 -17.11718 -16.67696 -16.50195 -16.47956 -15.84300 -15.42153 -15.03793 -14.94149 -14.64754 -14.29324 -14.25093 -13.65875 -13.57188 -13.38850 -13.27203 -13.09258 -13.01241 -12.84414 -12.68152 -12.34030 -11.95958 -11.86854 -11.68139 -11.17434 -11.08809 -10.54204 -10.15600 -10.02354 -9.21090 -9.01697 -8.51779 -6.22938 -0.02674 0.08423 0.93253 1.07803 1.30892 1.42472 1.46412 1.52802 1.97328 2.24080 2.25236 2.42417 2.67319 2.86543 3.58251 3.67494 3.80105 4.01813 4.08831 4.16107 4.30540 4.33204 4.37412 4.40600 4.53703 4.55517 4.70326 4.84027 4.85747 5.02543 5.08411 5.31230 5.61365 5.70938 6.06295 6.11562 6.28406 6.93483 7.03075 8.60628 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.003450 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.206015 B = 8114.744306 C = 8721.660270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.130 3.870 4 C -0.186 4.186 5 C -0.057 4.057 6 C -0.074 4.074 7 Cl -0.063 7.063 8 C -0.072 4.072 9 C 0.094 3.906 10 N -0.562 5.562 11 C 0.075 3.925 12 C 0.538 3.462 13 O -0.552 6.552 14 C -0.102 4.102 15 S -0.176 6.176 16 C -0.527 4.527 17 H 0.064 0.936 18 C 0.048 3.952 19 N -0.916 5.916 20 Si 0.912 3.088 21 H -0.262 1.262 22 H -0.258 1.258 23 H -0.239 1.239 24 H 0.064 0.936 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.173 0.827 28 H 0.169 0.831 29 H 0.139 0.861 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.990 18.754 13.505 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.083 3.917 4 C -0.205 4.205 5 C -0.076 4.076 6 C -0.101 4.101 7 Cl -0.034 7.034 8 C -0.092 4.092 9 C 0.003 3.997 10 N -0.293 5.293 11 C -0.066 4.066 12 C 0.327 3.673 13 O -0.429 6.429 14 C -0.253 4.253 15 S 0.051 5.949 16 C -0.675 4.675 17 H 0.083 0.917 18 C -0.157 4.157 19 N -0.554 5.554 20 Si 0.734 3.266 21 H -0.187 1.187 22 H -0.182 1.182 23 H -0.163 1.163 24 H 0.083 0.917 25 H 0.130 0.870 26 H 0.100 0.900 27 H 0.191 0.809 28 H 0.186 0.814 29 H 0.157 0.843 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.220 19.237 11.923 27.844 hybrid contribution 0.711 -0.803 0.485 1.177 sum -15.509 18.433 12.407 27.097 Atomic orbital electron populations 1.23434 0.75916 1.05683 1.02831 1.86166 1.23915 1.26355 1.87795 1.19590 0.91357 0.86010 0.94789 1.21435 1.01850 0.90123 1.07124 1.21229 0.91791 0.99191 0.95365 1.20663 0.93420 0.86367 1.09674 1.98368 1.81022 1.26878 1.97180 1.21075 1.00891 0.89598 0.97631 1.16850 0.87433 0.86266 1.09144 1.45097 1.52647 1.24514 1.07086 1.22174 1.01620 0.99576 0.83234 1.20211 0.79174 0.84673 0.83237 1.90684 1.55966 1.63936 1.32315 1.23249 1.03257 0.97831 1.00946 1.84749 1.69368 1.32451 1.08338 1.22433 1.37416 1.10889 0.96730 0.91737 1.25515 0.93318 0.93903 1.02998 1.70008 1.34868 1.16621 1.33882 0.85905 0.81359 0.79446 0.79906 1.18681 1.18180 1.16274 0.91711 0.87022 0.89977 0.80945 0.81385 0.84330 0.91074 0.89466 0.88606 0.86473 0.86876 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -8.04 10.24 -93.50 -0.96 -8.99 16 3 C 0.13 3.13 6.70 22.60 0.15 3.28 16 4 C -0.19 -3.14 9.03 22.34 0.20 -2.94 16 5 C -0.06 -0.93 9.82 22.30 0.22 -0.71 16 6 C -0.07 -1.51 6.32 22.32 0.14 -1.37 16 7 Cl -0.06 -1.19 28.95 -2.72 -0.08 -1.27 16 8 C -0.07 -1.76 9.74 22.40 0.22 -1.54 16 9 C 0.09 2.56 4.48 38.18 0.17 2.73 16 10 N -0.56 -16.30 2.66 -654.11 -1.74 -18.04 16 11 C 0.07 1.50 10.24 127.77 1.31 2.81 16 12 C 0.54 20.44 7.66 87.66 0.67 21.11 16 13 O -0.55 -25.51 15.84 -3.07 -0.05 -25.56 16 14 C -0.10 -4.03 4.70 71.24 0.34 -3.69 16 15 S -0.18 -9.08 18.55 -56.49 -1.05 -10.13 16 16 C -0.53 -30.86 10.04 67.96 0.68 -30.17 16 17 H 0.06 3.96 8.03 -2.91 -0.02 3.93 16 18 C 0.05 2.84 5.50 84.86 0.47 3.31 16 19 N -0.92 -55.85 13.97 21.65 0.30 -55.54 16 20 Si 0.91 45.35 27.74 68.60 1.90 47.25 16 21 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.24 -11.93 6.74 99.48 0.67 -11.26 16 24 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 25 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 0.68 7.66 -2.39 -0.02 0.66 16 27 H 0.17 1.70 6.30 -2.91 -0.02 1.68 16 28 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.66 6.43 -2.39 -0.02 1.65 16 32 H 0.10 1.46 8.05 -2.39 -0.02 1.44 16 33 H 0.12 4.17 7.40 -2.39 -0.02 4.15 16 34 H 0.11 4.15 8.11 -2.40 -0.02 4.13 16 35 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -76.99 333.30 5.09 -71.90 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.08 Total: 6.25 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 5.68 Total: -5.87 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -1.44 Total: -73.59 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -1.01 Total: -34.55 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -76.99 5.09 -71.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114284353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.271 kcal (2) G-P(sol) polarization free energy of solvation -76.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds