Wall clock time and date at job start Tue Mar 31 2020 11:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00202 * 2 1 4 4 O 1.20829 * 119.99589 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99939 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.46808 * 179.97438 * 5 3 2 7 7 C 1.36900 * 120.00289 * 79.35082 * 6 5 3 8 8 H 1.07999 * 119.99864 * 312.41755 * 7 6 5 9 9 C 1.39029 * 119.99833 * 132.68799 * 7 6 5 10 10 N 1.31376 * 120.00209 * 352.96267 * 9 7 6 11 11 Si 1.86803 * 119.99750 * 172.96352 * 9 7 6 12 12 H 1.48500 * 109.47141 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47040 * 119.99975 * 11 9 7 14 14 H 1.48502 * 109.46887 * 240.00009 * 11 9 7 15 15 C 1.34780 * 119.99954 * 259.34962 * 6 5 3 16 16 O 1.21614 * 120.00029 * 172.46958 * 15 6 5 17 17 C 1.47538 * 120.00040 * 352.47300 * 15 6 5 18 18 C 1.39757 * 120.13442 * 30.44033 * 17 15 6 19 19 C 1.37770 * 119.88810 * 179.71964 * 18 17 15 20 20 C 1.38733 * 120.15652 * 0.55805 * 19 18 17 21 21 F 1.35102 * 119.86455 * 179.74224 * 20 19 18 22 22 C 1.38587 * 120.27571 * 359.72091 * 20 19 18 23 23 C 1.38014 * 120.10938 * 359.97438 * 22 20 19 24 24 Cl 1.73603 * 120.07860 * 179.97438 * 23 22 20 25 25 H 1.08996 * 109.47392 * 59.99831 * 1 2 3 26 26 H 1.08994 * 109.47506 * 180.02562 * 1 2 3 27 27 H 1.09011 * 109.47416 * 300.00209 * 1 2 3 28 28 H 1.08993 * 109.47303 * 59.99865 * 5 3 2 29 29 H 1.08998 * 109.47495 * 299.99309 * 5 3 2 30 30 H 0.96998 * 119.99994 * 185.01785 * 10 9 7 31 31 H 1.08004 * 120.06252 * 359.97438 * 18 17 15 32 32 H 1.07998 * 119.92447 * 180.25659 * 19 18 17 33 33 H 1.07993 * 119.94063 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 3.9652 3.3990 1.1645 8 1 3.0970 3.3679 1.8062 9 6 5.0638 4.1741 1.5184 10 7 6.1685 4.1099 0.8103 11 14 4.9690 5.3067 3.0009 12 1 3.6257 5.1952 3.6240 13 1 6.0065 4.9163 3.9891 14 1 5.1999 6.7084 2.5684 15 6 4.3801 3.2640 -1.1475 16 8 4.5934 4.4609 -1.1782 17 6 4.5574 2.4516 -2.3663 18 6 3.7736 1.3127 -2.5705 19 6 3.9394 0.5611 -3.7131 20 6 4.8901 0.9257 -4.6553 21 9 5.0513 0.1814 -5.7712 22 6 5.6750 2.0505 -4.4569 23 6 5.5140 2.8151 -3.3192 24 17 6.4980 4.2237 -3.0711 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.9564 0.7805 -0.8891 29 1 3.9557 0.7810 0.8908 30 1 6.9580 4.5942 1.0984 31 1 3.0363 1.0245 -1.8357 32 1 3.3311 -0.3168 -3.8734 33 1 6.4131 2.3296 -5.1940 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120534874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:48 Heat of formation + Delta-G solvation = -108.234594 kcal Electronic energy + Delta-G solvation = -24537.998683 eV Core-core repulsion = 20506.137694 eV Total energy + Delta-G solvation = -4031.860989 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.02274 -41.94299 -40.70991 -39.02276 -37.51259 -37.31720 -36.09206 -34.21378 -32.21807 -31.56890 -30.09028 -27.80558 -26.85142 -24.32318 -24.20154 -22.39799 -21.48715 -19.14668 -18.98292 -18.64371 -18.23118 -17.66151 -17.42287 -17.12182 -16.73033 -16.63787 -15.95954 -15.82290 -15.33051 -15.29001 -14.95642 -14.52594 -14.25949 -14.18312 -13.93589 -13.53692 -13.33838 -12.98916 -12.89299 -12.82810 -12.65968 -12.34249 -12.14721 -11.86408 -11.81334 -11.72766 -11.62003 -10.84775 -10.19481 -10.01361 -9.71589 -9.24311 -8.21318 -6.06533 -0.35942 -0.09798 1.12341 1.18526 1.37964 1.44551 1.52743 1.63285 2.06447 2.29583 2.74468 3.01060 3.08350 3.20803 3.51921 3.80999 3.85216 3.96297 4.07694 4.16283 4.28183 4.39105 4.40166 4.53538 4.63842 4.76247 4.79373 4.88592 5.02692 5.35704 5.48861 5.57540 6.17778 6.79960 6.94715 7.08091 7.51609 8.20198 8.86257 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.010676 B = 0.007311 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.120587 B = 3829.112855 C = 6142.979904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.442 3.558 4 O -0.525 6.525 5 C 0.074 3.926 6 N -0.445 5.445 7 C -0.349 4.349 8 H 0.068 0.932 9 C 0.021 3.979 10 N -0.854 5.854 11 Si 0.975 3.025 12 H -0.266 1.266 13 H -0.266 1.266 14 H -0.294 1.294 15 C 0.514 3.486 16 O -0.546 6.546 17 C -0.133 4.133 18 C -0.089 4.089 19 C -0.130 4.130 20 C 0.126 3.874 21 F -0.124 7.124 22 C -0.147 4.147 23 C 0.014 3.986 24 Cl -0.044 7.044 25 H 0.060 0.940 26 H 0.141 0.859 27 H 0.052 0.948 28 H 0.155 0.845 29 H 0.124 0.876 30 H 0.263 0.737 31 H 0.158 0.842 32 H 0.187 0.813 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 -13.533 -7.984 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.284 3.716 4 O -0.413 6.413 5 C -0.051 4.051 6 N -0.167 5.167 7 C -0.476 4.476 8 H 0.085 0.915 9 C -0.186 4.186 10 N -0.488 5.488 11 Si 0.800 3.200 12 H -0.191 1.191 13 H -0.191 1.191 14 H -0.221 1.221 15 C 0.303 3.697 16 O -0.424 6.424 17 C -0.138 4.138 18 C -0.107 4.107 19 C -0.149 4.149 20 C 0.106 3.894 21 F -0.103 7.103 22 C -0.166 4.166 23 C -0.014 4.014 24 Cl -0.015 7.015 25 H 0.079 0.921 26 H 0.159 0.841 27 H 0.071 0.929 28 H 0.171 0.829 29 H 0.142 0.858 30 H 0.072 0.928 31 H 0.175 0.825 32 H 0.204 0.796 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.336 -12.384 -8.044 15.391 hybrid contribution 0.051 1.185 0.777 1.418 sum -4.286 -11.199 -7.267 14.021 Atomic orbital electron populations 1.23563 0.75120 1.05867 1.02171 1.86514 1.24749 1.31926 1.83939 1.24894 0.93149 0.81595 0.71997 1.90687 1.67465 1.37879 1.45301 1.22281 0.86548 0.87507 1.08736 1.42906 1.59658 1.07595 1.06503 1.19126 1.00767 1.28658 0.99087 0.91452 1.26091 0.94509 0.98393 0.99650 1.69908 1.01408 1.39962 1.37507 0.85179 0.78588 0.77864 0.78369 1.19064 1.19118 1.22058 1.18235 0.81814 0.87222 0.82440 1.90622 1.51763 1.16193 1.83828 1.20393 0.98885 0.97816 0.96687 1.21818 0.98766 0.92199 0.97926 1.21463 0.98782 1.02660 0.91963 1.17536 0.97004 0.90444 0.84446 1.91545 1.94651 1.74815 1.49250 1.21075 1.02811 0.95083 0.97641 1.20814 0.94257 0.91295 0.95050 1.98414 1.67810 1.38714 1.96532 0.92098 0.84086 0.92907 0.82855 0.85790 0.92785 0.82518 0.79550 0.81438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -9.41 10.56 -51.43 -0.54 -9.96 16 3 C 0.44 15.66 6.26 71.23 0.45 16.11 16 4 O -0.53 -23.26 15.88 21.96 0.35 -22.91 16 5 C 0.07 2.74 5.47 85.63 0.47 3.20 16 6 N -0.44 -22.20 2.12 -643.21 -1.36 -23.56 16 7 C -0.35 -19.37 8.74 84.09 0.73 -18.64 16 8 H 0.07 3.80 7.84 -2.91 -0.02 3.78 16 9 C 0.02 1.17 4.75 84.95 0.40 1.57 16 10 N -0.85 -49.45 11.48 21.68 0.25 -49.20 16 11 Si 0.97 45.29 29.56 68.60 2.03 47.32 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 13 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 14 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 15 C 0.51 26.49 6.29 86.70 0.54 27.04 16 16 O -0.55 -32.73 12.90 -4.08 -0.05 -32.78 16 17 C -0.13 -5.38 5.60 -20.07 -0.11 -5.49 16 18 C -0.09 -2.68 7.50 22.53 0.17 -2.51 16 19 C -0.13 -2.92 10.01 22.28 0.22 -2.69 16 20 C 0.13 3.01 7.31 22.47 0.16 3.18 16 21 F -0.12 -2.68 17.26 44.97 0.78 -1.90 16 22 C -0.15 -4.11 9.79 22.30 0.22 -3.89 16 23 C 0.01 0.52 6.34 22.60 0.14 0.67 16 24 Cl -0.04 -1.85 26.52 -2.72 -0.07 -1.92 16 25 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 26 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.15 4.74 3.76 -5.45 -0.02 4.72 16 29 H 0.12 4.19 8.12 -2.39 -0.02 4.18 16 30 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.16 4.56 3.35 -2.91 -0.01 4.55 16 32 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.17 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -75.98 308.13 7.14 -68.83 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.17 Total: 5.82 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 4.60 Total: 20.26 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -1.11 Total: -72.76 kcal Atomic # 8 Polarization: -65.40 SS G_CDS: -0.25 Total: -65.65 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.90 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.92 kcal Total: -75.98 7.14 -68.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120534874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.402 kcal (2) G-P(sol) polarization free energy of solvation -75.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds