Wall clock time and date at job start Tue Mar 31 2020 11:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99668 * 2 1 4 4 H 1.48507 * 109.47168 * 269.99705 * 3 2 1 5 5 H 1.48500 * 109.47701 * 29.99516 * 3 2 1 6 6 H 1.48498 * 109.47293 * 149.99755 * 3 2 1 7 7 C 1.38942 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99863 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00466 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00523 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99736 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00146 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.46898 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46704 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47013 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47208 * 179.97438 * 15 14 13 17 17 C 1.38265 * 119.97823 * 269.97496 * 16 15 14 18 18 C 1.38211 * 120.03660 * 179.97438 * 17 16 15 19 19 C 1.38344 * 119.99792 * 0.04223 * 18 17 16 20 20 Cl 1.73605 * 120.01708 * 180.25403 * 19 18 17 21 21 C 1.38445 * 119.96254 * 359.97438 * 19 18 17 22 22 Cl 1.73601 * 120.01534 * 180.02562 * 21 19 18 23 23 C 1.38196 * 119.98121 * 90.00245 * 16 15 14 24 24 H 0.96999 * 120.00258 * 0.02562 * 1 2 3 25 25 H 0.97006 * 119.99991 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.47124 * 59.99588 * 12 10 9 27 27 H 1.09002 * 109.46966 * 299.99985 * 12 10 9 28 28 H 1.08997 * 109.47404 * 60.00306 * 13 12 10 29 29 H 1.09002 * 109.47010 * 299.99604 * 13 12 10 30 30 H 1.08998 * 109.47769 * 59.99848 * 14 13 12 31 31 H 1.09002 * 109.46966 * 299.99512 * 14 13 12 32 32 H 1.09008 * 109.47245 * 59.99770 * 15 14 13 33 33 H 1.09002 * 109.47014 * 299.99676 * 15 14 13 34 34 H 1.07998 * 119.98546 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.99870 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.00416 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5455 1.4404 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0011 13 6 2.2382 -6.0257 0.0016 14 6 1.4732 -7.3508 0.0016 15 6 2.4675 -8.5137 0.0015 16 6 1.7140 -9.8188 0.0020 17 6 1.3695 -10.4171 1.2000 18 6 0.6781 -11.6138 1.2019 19 6 0.3310 -12.2141 0.0048 20 17 -0.5433 -13.7139 0.0066 21 6 0.6763 -11.6151 -1.1947 22 17 0.2409 -12.3668 -2.6977 23 6 1.3683 -10.4172 -1.1947 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.6169 -4.9208 -0.8885 27 1 0.6176 -4.9204 0.8914 28 1 2.8649 -5.9676 0.8916 29 1 2.8649 -5.9684 -0.8884 30 1 0.8468 -7.4088 -0.8885 31 1 0.8463 -7.4084 0.8914 32 1 3.0943 -8.4560 0.8915 33 1 3.0941 -8.4559 -0.8886 34 1 1.6402 -9.9488 2.1347 35 1 0.4089 -12.0804 2.1380 36 1 1.6385 -9.9497 -2.1301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126200070.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:38 Heat of formation + Delta-G solvation = -59.325616 kcal Electronic energy + Delta-G solvation = -19859.954259 eV Core-core repulsion = 16394.383592 eV Total energy + Delta-G solvation = -3465.570667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.97900 -38.28215 -37.08556 -36.85964 -35.36519 -33.92671 -32.17083 -31.28730 -31.17061 -28.77320 -25.58696 -24.02902 -23.35315 -21.74346 -20.89491 -19.04159 -17.83904 -17.59044 -16.51052 -15.99221 -15.79367 -15.31914 -14.59965 -14.43323 -14.37175 -14.20363 -13.88917 -13.74140 -13.12358 -12.57764 -12.47986 -12.27870 -12.21193 -11.99500 -11.68326 -11.51102 -11.36240 -11.24372 -11.14675 -10.95095 -10.87952 -10.84462 -10.39466 -10.31437 -10.20497 -9.51517 -9.32493 -8.92512 -8.37298 -7.96830 -6.41737 -3.82658 0.58007 0.72089 1.49197 1.86329 3.06048 3.17404 3.25966 3.31879 3.93128 4.16893 4.22966 4.34032 4.69814 4.74487 4.85239 4.92448 5.05296 5.18406 5.24926 5.32084 5.45407 5.56012 5.59937 5.68735 5.75935 5.83915 5.91152 6.04265 6.12680 6.15988 6.26240 6.50408 6.56172 6.69607 7.54952 8.06257 8.61199 9.17713 9.55658 10.07012 10.75976 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.032698 B = 0.001859 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.121892 B =15062.201781 C =15205.984909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.439 3.561 11 O -0.599 6.599 12 C -0.131 4.131 13 C -0.097 4.097 14 C -0.115 4.115 15 C -0.085 4.085 16 C -0.056 4.056 17 C -0.102 4.102 18 C -0.096 4.096 19 C -0.041 4.041 20 Cl -0.055 7.055 21 C -0.028 4.028 22 Cl -0.052 7.052 23 C -0.098 4.098 24 H 0.271 0.729 25 H 0.393 0.607 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 -25.836 0.298 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.485 6.485 12 C -0.171 4.171 13 C -0.135 4.135 14 C -0.152 4.152 15 C -0.122 4.122 16 C -0.056 4.056 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.068 4.068 20 Cl -0.026 7.026 21 C -0.055 4.055 22 Cl -0.023 7.023 23 C -0.117 4.117 24 H 0.081 0.919 25 H 0.226 0.774 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.474 -25.865 0.163 25.907 hybrid contribution -0.478 0.654 -0.159 0.825 sum -1.952 -25.211 0.004 25.286 Atomic orbital electron populations 1.69612 1.05934 1.28149 1.50606 1.25271 0.95643 0.99752 0.97350 0.85862 0.79228 0.80830 0.78392 1.20402 1.20920 1.19433 1.19720 0.93379 0.82409 1.47558 0.87976 1.41942 1.09247 1.04772 1.64020 1.20033 0.88305 0.85149 0.84018 1.90503 1.14119 1.87532 1.56343 1.21487 0.98909 0.94116 1.02635 1.21247 0.97479 0.91351 1.03432 1.21644 0.97685 0.93506 1.02379 1.20735 0.97507 0.89915 1.04018 1.20113 0.96862 0.96554 0.92074 1.21201 0.97609 0.94502 0.98668 1.21053 0.98338 0.95702 0.96424 1.20767 1.01486 0.90935 0.93622 1.98387 1.74397 1.30969 1.98885 1.20786 1.02326 0.95877 0.86543 1.98394 1.91615 1.81479 1.30843 1.21006 0.97984 0.93137 0.99576 0.91872 0.77393 0.90636 0.90645 0.91386 0.91396 0.91809 0.91780 0.90106 0.90221 0.84223 0.84066 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 10 C 0.44 10.28 7.78 -10.98 -0.09 10.19 16 11 O -0.60 -16.13 15.56 5.55 0.09 -16.04 16 12 C -0.13 -2.19 5.70 -27.88 -0.16 -2.35 16 13 C -0.10 -1.39 4.50 -26.73 -0.12 -1.51 16 14 C -0.11 -1.19 5.20 -26.73 -0.14 -1.33 16 15 C -0.08 -0.74 5.34 -27.88 -0.15 -0.88 16 16 C -0.06 -0.47 5.13 -104.63 -0.54 -1.01 16 17 C -0.10 -0.78 9.70 -39.58 -0.38 -1.16 16 18 C -0.10 -0.75 9.83 -39.55 -0.39 -1.13 16 19 C -0.04 -0.37 6.32 -39.47 -0.25 -0.62 16 20 Cl -0.06 -0.49 27.96 -51.86 -1.45 -1.94 16 21 C -0.03 -0.26 6.32 -39.47 -0.25 -0.51 16 22 Cl -0.05 -0.49 27.96 -51.86 -1.45 -1.94 16 23 C -0.10 -0.87 9.48 -39.56 -0.38 -1.24 16 24 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 29 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.66 8.08 -51.92 -0.42 0.24 16 33 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -30.94 343.67 -9.54 -40.48 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.47 Total: 6.24 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -3.08 Total: -9.67 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.67 Total: -38.34 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.09 Total: -16.04 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -2.90 Total: -3.88 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.94 -9.54 -40.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126200070.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.843 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds