Wall clock time and date at job start Tue Mar 31 2020 11:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99668 * 2 1 4 4 H 1.48507 * 109.47168 * 269.99705 * 3 2 1 5 5 H 1.48500 * 109.47701 * 29.99516 * 3 2 1 6 6 H 1.48498 * 109.47293 * 149.99755 * 3 2 1 7 7 C 1.38942 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99863 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00466 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00523 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99736 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00146 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.46898 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46704 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47013 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47208 * 179.97438 * 15 14 13 17 17 C 1.38265 * 119.97823 * 269.97496 * 16 15 14 18 18 C 1.38211 * 120.03660 * 179.97438 * 17 16 15 19 19 C 1.38344 * 119.99792 * 0.04223 * 18 17 16 20 20 Cl 1.73605 * 120.01708 * 180.25403 * 19 18 17 21 21 C 1.38445 * 119.96254 * 359.97438 * 19 18 17 22 22 Cl 1.73601 * 120.01534 * 180.02562 * 21 19 18 23 23 C 1.38196 * 119.98121 * 90.00245 * 16 15 14 24 24 H 0.96999 * 120.00258 * 0.02562 * 1 2 3 25 25 H 0.97006 * 119.99991 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.47124 * 59.99588 * 12 10 9 27 27 H 1.09002 * 109.46966 * 299.99985 * 12 10 9 28 28 H 1.08997 * 109.47404 * 60.00306 * 13 12 10 29 29 H 1.09002 * 109.47010 * 299.99604 * 13 12 10 30 30 H 1.08998 * 109.47769 * 59.99848 * 14 13 12 31 31 H 1.09002 * 109.46966 * 299.99512 * 14 13 12 32 32 H 1.09008 * 109.47245 * 59.99770 * 15 14 13 33 33 H 1.09002 * 109.47014 * 299.99676 * 15 14 13 34 34 H 1.07998 * 119.98546 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.99870 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.00416 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5455 1.4404 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0011 13 6 2.2382 -6.0257 0.0016 14 6 1.4732 -7.3508 0.0016 15 6 2.4675 -8.5137 0.0015 16 6 1.7140 -9.8188 0.0020 17 6 1.3695 -10.4171 1.2000 18 6 0.6781 -11.6138 1.2019 19 6 0.3310 -12.2141 0.0048 20 17 -0.5433 -13.7139 0.0066 21 6 0.6763 -11.6151 -1.1947 22 17 0.2409 -12.3668 -2.6977 23 6 1.3683 -10.4172 -1.1947 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.6169 -4.9208 -0.8885 27 1 0.6176 -4.9204 0.8914 28 1 2.8649 -5.9676 0.8916 29 1 2.8649 -5.9684 -0.8884 30 1 0.8468 -7.4088 -0.8885 31 1 0.8463 -7.4084 0.8914 32 1 3.0943 -8.4560 0.8915 33 1 3.0941 -8.4559 -0.8886 34 1 1.6402 -9.9488 2.1347 35 1 0.4089 -12.0804 2.1380 36 1 1.6385 -9.9497 -2.1301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126200070.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:37 Heat of formation + Delta-G solvation = -75.583820 kcal Electronic energy + Delta-G solvation = -19860.659267 eV Core-core repulsion = 16394.383592 eV Total energy + Delta-G solvation = -3466.275676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.62570 -40.12579 -37.78761 -37.53520 -36.45306 -35.80749 -33.38867 -32.98282 -31.89824 -29.80524 -27.20035 -25.34703 -23.96790 -22.70512 -21.75437 -20.84011 -19.83015 -18.25283 -17.62101 -17.21059 -16.63031 -16.51421 -16.49580 -15.81763 -15.20714 -15.16381 -14.91408 -14.76605 -14.57187 -13.64799 -13.60390 -13.50548 -13.25843 -12.95376 -12.90920 -12.78495 -12.46890 -12.38055 -12.15000 -12.10647 -12.02080 -11.89464 -11.85465 -11.70430 -11.51297 -11.35913 -10.32962 -10.01489 -9.95131 -9.57749 -8.46854 -5.95884 -0.06782 0.10631 0.82397 1.20978 1.37896 1.41452 1.54368 2.07501 2.30236 2.43372 3.21059 3.25984 3.62647 3.72424 4.05668 4.09311 4.15621 4.22407 4.27127 4.35745 4.53824 4.63300 4.74609 4.78070 4.91336 4.94703 5.00452 5.02928 5.11311 5.26419 5.35563 5.41161 5.55765 5.57675 5.66420 6.00765 6.59484 7.12333 7.57591 8.12907 8.70526 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.032698 B = 0.001859 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.121892 B =15062.201781 C =15205.984909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.433 3.567 11 O -0.638 6.638 12 C -0.121 4.121 13 C -0.091 4.091 14 C -0.103 4.103 15 C -0.080 4.080 16 C -0.059 4.059 17 C -0.098 4.098 18 C -0.096 4.096 19 C -0.052 4.052 20 Cl -0.058 7.058 21 C -0.042 4.042 22 Cl -0.059 7.059 23 C -0.104 4.104 24 H 0.278 0.722 25 H 0.397 0.603 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 -26.226 0.953 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.215 4.215 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.222 3.778 11 O -0.527 6.527 12 C -0.161 4.161 13 C -0.129 4.129 14 C -0.141 4.141 15 C -0.117 4.117 16 C -0.060 4.060 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.079 4.079 20 Cl -0.029 7.029 21 C -0.069 4.069 22 Cl -0.030 7.030 23 C -0.123 4.123 24 H 0.087 0.913 25 H 0.231 0.769 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.022 -26.272 0.815 26.362 hybrid contribution -0.304 0.734 -0.350 0.868 sum -2.327 -25.539 0.465 25.649 Atomic orbital electron populations 1.69671 1.06836 1.29307 1.50342 1.26066 0.96580 1.02506 0.96303 0.84925 0.77892 0.76839 0.78667 1.19628 1.19494 1.19736 1.19690 0.92715 0.84256 1.49948 0.90381 1.42052 1.09389 1.04944 1.64856 1.21259 0.88243 0.86699 0.81611 1.90472 1.16264 1.88414 1.57521 1.21527 0.99132 0.90749 1.04712 1.21196 0.97019 0.92596 1.02118 1.21519 0.97652 0.91652 1.03241 1.20659 0.97167 0.89360 1.04520 1.20102 0.97058 0.96491 0.92312 1.21470 0.96719 0.94247 0.99203 1.21314 0.97764 0.95652 0.96714 1.20966 1.01797 0.91053 0.94088 1.98384 1.74486 1.31168 1.98901 1.20912 1.03126 0.96364 0.86516 1.98387 1.91723 1.81622 1.31277 1.21128 0.97920 0.93056 1.00165 0.91290 0.76935 0.88528 0.88280 0.92608 0.92969 0.91254 0.90583 0.89333 0.90197 0.82138 0.82124 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.83 13.05 21.66 0.28 -49.55 16 2 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 3 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.34 -19.22 9.68 84.04 0.81 -18.41 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.58 -29.69 5.29 -306.99 -1.62 -31.32 16 10 C 0.43 20.40 7.78 87.66 0.68 21.09 16 11 O -0.64 -35.12 15.56 -3.07 -0.05 -35.17 16 12 C -0.12 -3.87 5.70 29.85 0.17 -3.70 16 13 C -0.09 -2.49 4.50 30.59 0.14 -2.35 16 14 C -0.10 -1.88 5.20 30.60 0.16 -1.72 16 15 C -0.08 -1.21 5.34 29.85 0.16 -1.05 16 16 C -0.06 -0.87 5.13 -19.87 -0.10 -0.97 16 17 C -0.10 -1.23 9.70 22.27 0.22 -1.01 16 18 C -0.10 -1.26 9.83 22.29 0.22 -1.04 16 19 C -0.05 -0.86 6.32 22.34 0.14 -0.72 16 20 Cl -0.06 -0.97 27.96 -2.72 -0.08 -1.05 16 21 C -0.04 -0.74 6.32 22.34 0.14 -0.60 16 22 Cl -0.06 -1.08 27.96 -2.72 -0.08 -1.15 16 23 C -0.10 -1.69 9.48 22.29 0.21 -1.47 16 24 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 25 H 0.40 19.39 7.90 -92.70 -0.73 18.66 16 26 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 29 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.22 8.08 -2.38 -0.02 1.21 16 33 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 34 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -67.05 343.67 4.28 -62.78 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.37 Total: 22.82 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 3.42 Total: -12.30 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -1.34 Total: -80.87 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.05 Total: -35.17 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.15 Total: -2.20 kcal Total: -67.05 4.28 -62.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126200070.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.807 kcal (2) G-P(sol) polarization free energy of solvation -67.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds