Wall clock time and date at job start Tue Mar 31 2020 11:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99644 * 2 1 4 4 C 1.50691 * 109.47225 * 66.05057 * 3 2 1 5 5 H 1.08002 * 119.99994 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00183 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99838 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00097 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.47238 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47132 * 299.99564 * 8 6 4 11 11 H 1.48495 * 109.47501 * 59.99756 * 8 6 4 12 12 C 1.46901 * 110.99778 * 236.04963 * 2 1 3 13 13 H 1.09003 * 109.18750 * 57.25233 * 12 2 1 14 14 C 1.54250 * 109.19866 * 297.91671 * 12 2 1 15 15 S 1.83295 * 100.65639 * 267.05901 * 14 12 2 16 16 O 1.42099 * 111.55171 * 225.99366 * 15 14 12 17 17 O 1.42104 * 111.69781 * 85.70343 * 15 14 12 18 18 C 1.77620 * 97.18244 * 335.82697 * 15 14 12 19 19 C 1.37983 * 130.64622 * 195.06627 * 18 15 14 20 20 C 1.38182 * 120.24234 * 179.59368 * 19 18 15 21 21 C 1.38371 * 119.12010 * 359.97438 * 20 19 18 22 22 Cl 1.73606 * 119.79323 * 180.14264 * 21 20 19 23 23 C 1.37709 * 120.41967 * 0.13395 * 21 20 19 24 24 C 1.38268 * 107.82833 * 14.94635 * 18 15 14 25 25 H 1.08999 * 109.47645 * 66.41916 * 1 2 3 26 26 H 1.09001 * 109.46820 * 186.41634 * 1 2 3 27 27 H 1.08999 * 109.47350 * 306.41654 * 1 2 3 28 28 H 1.09006 * 109.47031 * 306.04550 * 3 2 1 29 29 H 1.09006 * 109.46848 * 186.05018 * 3 2 1 30 30 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 31 31 H 1.08994 * 111.19804 * 24.85978 * 14 12 2 32 32 H 1.08999 * 111.19487 * 149.20891 * 14 12 2 33 33 H 1.07994 * 119.87912 * 359.57534 * 19 18 15 34 34 H 1.08002 * 120.44411 * 179.97438 * 20 19 18 35 35 H 1.08007 * 119.47491 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0740 1.5114 2.0485 6 6 2.0267 3.3494 1.5284 7 7 2.7117 4.0019 0.6149 8 14 1.5830 4.1867 3.1383 9 1 2.1150 5.5732 3.1382 10 1 0.1059 4.2228 3.2867 11 1 2.1758 3.4296 4.2699 12 6 1.9954 -0.7659 -1.1377 13 1 1.6038 -0.3459 -2.0642 14 6 1.5404 -2.2346 -1.0143 15 16 2.9691 -2.9583 -0.1227 16 8 3.3832 -4.1849 -0.7087 17 8 2.8445 -2.8015 1.2841 18 6 4.1774 -1.7588 -0.6288 19 6 5.5556 -1.7919 -0.5710 20 6 6.2977 -0.7251 -1.0407 21 6 5.6402 0.3722 -1.5683 22 17 6.5553 1.7206 -2.1669 23 6 4.2644 0.4013 -1.6218 24 6 3.5014 -0.6695 -1.1466 25 1 -0.3634 0.4111 -0.9418 26 1 -0.3633 -1.0213 0.1148 27 1 -0.3634 0.6101 0.8270 28 1 1.5609 1.9274 -0.8310 29 1 3.0797 1.3445 -0.1083 30 1 2.9862 4.9181 0.7769 31 1 0.6272 -2.3162 -0.4250 32 1 1.4159 -2.6923 -1.9957 33 1 6.0562 -2.6545 -0.1568 34 1 7.3766 -0.7473 -0.9966 35 1 3.7669 1.2657 -2.0364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155502018.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:32 Heat of formation + Delta-G solvation = -23.358478 kcal Electronic energy + Delta-G solvation = -22530.298826 eV Core-core repulsion = 19068.331517 eV Total energy + Delta-G solvation = -3461.967309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91025 -37.41970 -36.83371 -36.24897 -35.73414 -33.32941 -31.98559 -30.92237 -29.72172 -27.04179 -25.85371 -23.29881 -23.19601 -21.92104 -20.19335 -18.94082 -17.26690 -16.70694 -16.53292 -16.30501 -15.89956 -15.09223 -14.96153 -14.70692 -14.43047 -13.79568 -13.75699 -13.39131 -13.06903 -12.57768 -12.54118 -12.40098 -12.07355 -11.97009 -11.81293 -11.65532 -11.49890 -11.30849 -10.98300 -10.83826 -10.75978 -10.65775 -10.52829 -10.26076 -10.00121 -9.37885 -8.94869 -8.81063 -8.46789 -7.58476 -6.10309 -4.10976 0.22225 0.79139 1.22984 2.11840 2.78743 3.30416 3.34825 3.37019 3.39297 3.65991 4.15372 4.27039 4.40444 4.46295 4.72112 4.93958 5.03684 5.25019 5.27888 5.29028 5.38315 5.50098 5.68110 5.79681 5.87792 5.94666 6.05926 6.11200 6.19141 6.54962 6.69549 7.02192 7.07822 7.60828 7.82323 7.97728 8.34006 8.94090 9.52675 11.00344 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.006712 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.010583 B = 4170.835967 C = 5926.340167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.530 5.530 3 C 0.181 3.819 4 C -0.510 4.510 5 H 0.066 0.934 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.275 1.275 12 C 0.111 3.889 13 H 0.075 0.925 14 C -0.572 4.572 15 S 2.477 3.523 16 O -0.945 6.945 17 O -0.908 6.908 18 C -0.620 4.620 19 C 0.003 3.997 20 C -0.128 4.128 21 C 0.011 3.989 22 Cl -0.059 7.059 23 C -0.087 4.087 24 C -0.001 4.001 25 H 0.019 0.981 26 H 0.051 0.949 27 H 0.087 0.913 28 H -0.005 1.005 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.156 0.844 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 -10.648 -7.480 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.255 5.255 3 C 0.057 3.943 4 C -0.549 4.549 5 H 0.084 0.916 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.200 1.200 12 C 0.001 3.999 13 H 0.093 0.907 14 C -0.703 4.703 15 S 2.656 3.344 16 O -0.943 6.943 17 O -0.906 6.906 18 C -0.707 4.707 19 C -0.016 4.016 20 C -0.148 4.148 21 C -0.016 4.016 22 Cl -0.030 7.030 23 C -0.107 4.107 24 C -0.003 4.003 25 H 0.038 0.962 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.013 0.987 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.173 0.827 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.750 -11.337 -6.560 13.384 hybrid contribution -0.337 2.189 -0.469 2.264 sum 2.413 -9.148 -7.029 11.786 Atomic orbital electron populations 1.22388 0.87461 1.00397 1.01446 1.62441 1.07885 1.19007 1.36198 1.20086 0.96562 0.80302 0.97354 1.21048 1.35381 0.96893 1.01546 0.91630 1.24946 0.95143 0.97267 0.97000 1.69926 1.37902 1.11551 1.34026 0.86552 0.78693 0.78315 0.83845 1.21342 1.20252 1.20040 1.20614 0.89131 0.92412 0.97745 0.90728 1.30476 1.18685 1.06104 1.15000 1.06379 0.77795 0.74113 0.76076 1.93570 1.80297 1.41070 1.79323 1.93669 1.85163 1.85761 1.25966 1.30470 1.08238 1.17180 1.14811 1.20068 0.90584 0.97357 0.93620 1.21163 1.00625 0.92637 1.00349 1.20803 0.92161 0.89797 0.98808 1.98388 1.73671 1.44762 1.86206 1.20932 0.91643 0.98456 0.99693 1.20204 0.93963 0.92985 0.93191 0.96234 0.93002 0.89441 0.98689 0.93541 0.92785 0.82659 0.83796 0.84378 0.83963 0.83845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.13 60.06 0.55 1.08 16 2 N -0.53 -10.45 4.62 -236.80 -1.09 -11.55 16 3 C 0.18 4.37 4.07 -4.98 -0.02 4.35 16 4 C -0.51 -13.81 8.42 -34.45 -0.29 -14.10 16 5 H 0.07 1.77 7.14 -52.49 -0.37 1.39 16 6 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 7 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.11 1.74 2.36 -68.10 -0.16 1.58 16 13 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.57 -6.76 7.08 37.81 0.27 -6.50 16 15 S 2.48 36.42 6.15 -107.50 -0.66 35.75 16 16 O -0.95 -14.77 18.01 -57.39 -1.03 -15.80 16 17 O -0.91 -16.85 18.01 -57.39 -1.03 -17.88 16 18 C -0.62 -9.82 6.16 -39.66 -0.24 -10.06 16 19 C 0.00 0.04 10.02 -39.70 -0.40 -0.36 16 20 C -0.13 -1.78 9.87 -39.55 -0.39 -2.17 16 21 C 0.01 0.18 6.29 -39.73 -0.25 -0.07 16 22 Cl -0.06 -0.89 28.94 -51.86 -1.50 -2.39 16 23 C -0.09 -1.50 7.49 -39.19 -0.29 -1.80 16 24 C 0.00 -0.02 4.74 -103.92 -0.49 -0.51 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.70 6.09 -51.93 -0.32 0.38 16 27 H 0.09 1.65 6.71 -51.93 -0.35 1.30 16 28 H 0.00 -0.12 8.12 -51.93 -0.42 -0.54 16 29 H 0.05 1.18 4.77 -51.93 -0.25 0.93 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.16 1.62 5.83 -51.93 -0.30 1.32 16 32 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.14 2.55 7.61 -52.48 -0.40 2.15 16 LS Contribution 316.07 15.07 4.76 4.76 Total: -1.00 -33.56 316.07 -10.32 -43.88 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -3.66 Total: -1.32 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -1.82 Total: -27.05 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.36 Total: -36.32 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -2.07 Total: -33.68 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 36.42 SS G_CDS: -0.66 Total: 35.75 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.56 -10.32 -43.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155502018.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.524 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds