Wall clock time and date at job start Tue Mar 31 2020 11:13:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.46903 * 110.99644 * 2 1
4 4 C 1.50691 * 109.47225 * 66.05057 * 3 2 1
5 5 H 1.08002 * 119.99994 * 359.97438 * 4 3 2
6 6 C 1.37873 * 120.00183 * 180.02562 * 4 3 2
7 7 N 1.31514 * 119.99838 * 359.97438 * 6 4 3
8 8 Si 1.86799 * 120.00097 * 180.02562 * 6 4 3
9 9 H 1.48508 * 109.47238 * 179.97438 * 8 6 4
10 10 H 1.48497 * 109.47132 * 299.99564 * 8 6 4
11 11 H 1.48495 * 109.47501 * 59.99756 * 8 6 4
12 12 C 1.46901 * 110.99778 * 236.04963 * 2 1 3
13 13 H 1.09003 * 109.18750 * 57.25233 * 12 2 1
14 14 C 1.54250 * 109.19866 * 297.91671 * 12 2 1
15 15 S 1.83295 * 100.65639 * 267.05901 * 14 12 2
16 16 O 1.42099 * 111.55171 * 225.99366 * 15 14 12
17 17 O 1.42104 * 111.69781 * 85.70343 * 15 14 12
18 18 C 1.77620 * 97.18244 * 335.82697 * 15 14 12
19 19 C 1.37983 * 130.64622 * 195.06627 * 18 15 14
20 20 C 1.38182 * 120.24234 * 179.59368 * 19 18 15
21 21 C 1.38371 * 119.12010 * 359.97438 * 20 19 18
22 22 Cl 1.73606 * 119.79323 * 180.14264 * 21 20 19
23 23 C 1.37709 * 120.41967 * 0.13395 * 21 20 19
24 24 C 1.38268 * 107.82833 * 14.94635 * 18 15 14
25 25 H 1.08999 * 109.47645 * 66.41916 * 1 2 3
26 26 H 1.09001 * 109.46820 * 186.41634 * 1 2 3
27 27 H 1.08999 * 109.47350 * 306.41654 * 1 2 3
28 28 H 1.09006 * 109.47031 * 306.04550 * 3 2 1
29 29 H 1.09006 * 109.46848 * 186.05018 * 3 2 1
30 30 H 0.97005 * 119.99656 * 180.02562 * 7 6 4
31 31 H 1.08994 * 111.19804 * 24.85978 * 14 12 2
32 32 H 1.08999 * 111.19487 * 149.20891 * 14 12 2
33 33 H 1.07994 * 119.87912 * 359.57534 * 19 18 15
34 34 H 1.08002 * 120.44411 * 179.97438 * 20 19 18
35 35 H 1.08007 * 119.47491 * 179.97438 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9953 1.3715 0.0000
4 6 1.6369 2.0471 1.2984
5 1 1.0740 1.5114 2.0485
6 6 2.0267 3.3494 1.5284
7 7 2.7117 4.0019 0.6149
8 14 1.5830 4.1867 3.1383
9 1 2.1150 5.5732 3.1382
10 1 0.1059 4.2228 3.2867
11 1 2.1758 3.4296 4.2699
12 6 1.9954 -0.7659 -1.1377
13 1 1.6038 -0.3459 -2.0642
14 6 1.5404 -2.2346 -1.0143
15 16 2.9691 -2.9583 -0.1227
16 8 3.3832 -4.1849 -0.7087
17 8 2.8445 -2.8015 1.2841
18 6 4.1774 -1.7588 -0.6288
19 6 5.5556 -1.7919 -0.5710
20 6 6.2977 -0.7251 -1.0407
21 6 5.6402 0.3722 -1.5683
22 17 6.5553 1.7206 -2.1669
23 6 4.2644 0.4013 -1.6218
24 6 3.5014 -0.6695 -1.1466
25 1 -0.3634 0.4111 -0.9418
26 1 -0.3633 -1.0213 0.1148
27 1 -0.3634 0.6101 0.8270
28 1 1.5609 1.9274 -0.8310
29 1 3.0797 1.3445 -0.1083
30 1 2.9862 4.9181 0.7769
31 1 0.6272 -2.3162 -0.4250
32 1 1.4159 -2.6923 -1.9957
33 1 6.0562 -2.6545 -0.1568
34 1 7.3766 -0.7473 -0.9966
35 1 3.7669 1.2657 -2.0364
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000155502018.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:13:32
Heat of formation + Delta-G solvation = -23.358478 kcal
Electronic energy + Delta-G solvation = -22530.298826 eV
Core-core repulsion = 19068.331517 eV
Total energy + Delta-G solvation = -3461.967309 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 315.048 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.91025 -37.41970 -36.83371 -36.24897 -35.73414 -33.32941 -31.98559 -30.92237
-29.72172 -27.04179 -25.85371 -23.29881 -23.19601 -21.92104 -20.19335 -18.94082
-17.26690 -16.70694 -16.53292 -16.30501 -15.89956 -15.09223 -14.96153 -14.70692
-14.43047 -13.79568 -13.75699 -13.39131 -13.06903 -12.57768 -12.54118 -12.40098
-12.07355 -11.97009 -11.81293 -11.65532 -11.49890 -11.30849 -10.98300 -10.83826
-10.75978 -10.65775 -10.52829 -10.26076 -10.00121 -9.37885 -8.94869 -8.81063
-8.46789 -7.58476 -6.10309 -4.10976 0.22225 0.79139 1.22984 2.11840
2.78743 3.30416 3.34825 3.37019 3.39297 3.65991 4.15372 4.27039
4.40444 4.46295 4.72112 4.93958 5.03684 5.25019 5.27888 5.29028
5.38315 5.50098 5.68110 5.79681 5.87792 5.94666 6.05926 6.11200
6.19141 6.54962 6.69549 7.02192 7.07822 7.60828 7.82323 7.97728
8.34006 8.94090 9.52675 11.00344
Molecular weight = 315.05amu
Principal moments of inertia in cm(-1)
A = 0.010825 B = 0.006712 C = 0.004724
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2586.010583 B = 4170.835967 C = 5926.340167
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 N -0.530 5.530
3 C 0.181 3.819
4 C -0.510 4.510
5 H 0.066 0.934
6 C 0.058 3.942
7 N -0.895 5.895
8 Si 0.898 3.102
9 H -0.288 1.288
10 H -0.277 1.277
11 H -0.275 1.275
12 C 0.111 3.889
13 H 0.075 0.925
14 C -0.572 4.572
15 S 2.477 3.523
16 O -0.945 6.945
17 O -0.908 6.908
18 C -0.620 4.620
19 C 0.003 3.997
20 C -0.128 4.128
21 C 0.011 3.989
22 Cl -0.059 7.059
23 C -0.087 4.087
24 C -0.001 4.001
25 H 0.019 0.981
26 H 0.051 0.949
27 H 0.087 0.913
28 H -0.005 1.005
29 H 0.047 0.953
30 H 0.263 0.737
31 H 0.156 0.844
32 H 0.144 0.856
33 H 0.138 0.862
34 H 0.143 0.857
35 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.330 -10.648 -7.480 13.219
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 N -0.255 5.255
3 C 0.057 3.943
4 C -0.549 4.549
5 H 0.084 0.916
6 C -0.144 4.144
7 N -0.534 5.534
8 Si 0.726 3.274
9 H -0.213 1.213
10 H -0.203 1.203
11 H -0.200 1.200
12 C 0.001 3.999
13 H 0.093 0.907
14 C -0.703 4.703
15 S 2.656 3.344
16 O -0.943 6.943
17 O -0.906 6.906
18 C -0.707 4.707
19 C -0.016 4.016
20 C -0.148 4.148
21 C -0.016 4.016
22 Cl -0.030 7.030
23 C -0.107 4.107
24 C -0.003 4.003
25 H 0.038 0.962
26 H 0.070 0.930
27 H 0.106 0.894
28 H 0.013 0.987
29 H 0.065 0.935
30 H 0.072 0.928
31 H 0.173 0.827
32 H 0.162 0.838
33 H 0.156 0.844
34 H 0.160 0.840
35 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges 2.750 -11.337 -6.560 13.384
hybrid contribution -0.337 2.189 -0.469 2.264
sum 2.413 -9.148 -7.029 11.786
Atomic orbital electron populations
1.22388 0.87461 1.00397 1.01446 1.62441 1.07885 1.19007 1.36198
1.20086 0.96562 0.80302 0.97354 1.21048 1.35381 0.96893 1.01546
0.91630 1.24946 0.95143 0.97267 0.97000 1.69926 1.37902 1.11551
1.34026 0.86552 0.78693 0.78315 0.83845 1.21342 1.20252 1.20040
1.20614 0.89131 0.92412 0.97745 0.90728 1.30476 1.18685 1.06104
1.15000 1.06379 0.77795 0.74113 0.76076 1.93570 1.80297 1.41070
1.79323 1.93669 1.85163 1.85761 1.25966 1.30470 1.08238 1.17180
1.14811 1.20068 0.90584 0.97357 0.93620 1.21163 1.00625 0.92637
1.00349 1.20803 0.92161 0.89797 0.98808 1.98388 1.73671 1.44762
1.86206 1.20932 0.91643 0.98456 0.99693 1.20204 0.93963 0.92985
0.93191 0.96234 0.93002 0.89441 0.98689 0.93541 0.92785 0.82659
0.83796 0.84378 0.83963 0.83845
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.53 9.13 60.06 0.55 1.08 16
2 N -0.53 -10.45 4.62 -236.80 -1.09 -11.55 16
3 C 0.18 4.37 4.07 -4.98 -0.02 4.35 16
4 C -0.51 -13.81 8.42 -34.45 -0.29 -14.10 16
5 H 0.07 1.77 7.14 -52.49 -0.37 1.39 16
6 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
7 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16
8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16
9 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
12 C 0.11 1.74 2.36 -68.10 -0.16 1.58 16
13 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
14 C -0.57 -6.76 7.08 37.81 0.27 -6.50 16
15 S 2.48 36.42 6.15 -107.50 -0.66 35.75 16
16 O -0.95 -14.77 18.01 -57.39 -1.03 -15.80 16
17 O -0.91 -16.85 18.01 -57.39 -1.03 -17.88 16
18 C -0.62 -9.82 6.16 -39.66 -0.24 -10.06 16
19 C 0.00 0.04 10.02 -39.70 -0.40 -0.36 16
20 C -0.13 -1.78 9.87 -39.55 -0.39 -2.17 16
21 C 0.01 0.18 6.29 -39.73 -0.25 -0.07 16
22 Cl -0.06 -0.89 28.94 -51.86 -1.50 -2.39 16
23 C -0.09 -1.50 7.49 -39.19 -0.29 -1.80 16
24 C 0.00 -0.02 4.74 -103.92 -0.49 -0.51 16
25 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16
26 H 0.05 0.70 6.09 -51.93 -0.32 0.38 16
27 H 0.09 1.65 6.71 -51.93 -0.35 1.30 16
28 H 0.00 -0.12 8.12 -51.93 -0.42 -0.54 16
29 H 0.05 1.18 4.77 -51.93 -0.25 0.93 16
30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
31 H 0.16 1.62 5.83 -51.93 -0.30 1.32 16
32 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16
33 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16
34 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16
35 H 0.14 2.55 7.61 -52.48 -0.40 2.15 16
LS Contribution 316.07 15.07 4.76 4.76
Total: -1.00 -33.56 316.07 -10.32 -43.88
By element:
Atomic # 1 Polarization: 2.34 SS G_CDS: -3.66 Total: -1.32 kcal
Atomic # 6 Polarization: -25.23 SS G_CDS: -1.82 Total: -27.05 kcal
Atomic # 7 Polarization: -35.97 SS G_CDS: -0.36 Total: -36.32 kcal
Atomic # 8 Polarization: -31.62 SS G_CDS: -2.07 Total: -33.68 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal
Atomic # 16 Polarization: 36.42 SS G_CDS: -0.66 Total: 35.75 kcal
Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -33.56 -10.32 -43.88 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000155502018.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.524 kcal
(2) G-P(sol) polarization free energy of solvation -33.560 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.035 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.358 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds