Wall clock time and date at job start Tue Mar 31 2020 11:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99644 * 2 1 4 4 C 1.50691 * 109.47225 * 66.05057 * 3 2 1 5 5 H 1.08002 * 119.99994 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00183 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99838 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00097 * 180.02562 * 6 4 3 9 9 H 1.48508 * 109.47238 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47132 * 299.99564 * 8 6 4 11 11 H 1.48495 * 109.47501 * 59.99756 * 8 6 4 12 12 C 1.46901 * 110.99778 * 236.04963 * 2 1 3 13 13 H 1.09003 * 109.18750 * 57.25233 * 12 2 1 14 14 C 1.54250 * 109.19866 * 297.91671 * 12 2 1 15 15 S 1.83295 * 100.65639 * 267.05901 * 14 12 2 16 16 O 1.42099 * 111.55171 * 225.99366 * 15 14 12 17 17 O 1.42104 * 111.69781 * 85.70343 * 15 14 12 18 18 C 1.77620 * 97.18244 * 335.82697 * 15 14 12 19 19 C 1.37983 * 130.64622 * 195.06627 * 18 15 14 20 20 C 1.38182 * 120.24234 * 179.59368 * 19 18 15 21 21 C 1.38371 * 119.12010 * 359.97438 * 20 19 18 22 22 Cl 1.73606 * 119.79323 * 180.14264 * 21 20 19 23 23 C 1.37709 * 120.41967 * 0.13395 * 21 20 19 24 24 C 1.38268 * 107.82833 * 14.94635 * 18 15 14 25 25 H 1.08999 * 109.47645 * 66.41916 * 1 2 3 26 26 H 1.09001 * 109.46820 * 186.41634 * 1 2 3 27 27 H 1.08999 * 109.47350 * 306.41654 * 1 2 3 28 28 H 1.09006 * 109.47031 * 306.04550 * 3 2 1 29 29 H 1.09006 * 109.46848 * 186.05018 * 3 2 1 30 30 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 31 31 H 1.08994 * 111.19804 * 24.85978 * 14 12 2 32 32 H 1.08999 * 111.19487 * 149.20891 * 14 12 2 33 33 H 1.07994 * 119.87912 * 359.57534 * 19 18 15 34 34 H 1.08002 * 120.44411 * 179.97438 * 20 19 18 35 35 H 1.08007 * 119.47491 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0740 1.5114 2.0485 6 6 2.0267 3.3494 1.5284 7 7 2.7117 4.0019 0.6149 8 14 1.5830 4.1867 3.1383 9 1 2.1150 5.5732 3.1382 10 1 0.1059 4.2228 3.2867 11 1 2.1758 3.4296 4.2699 12 6 1.9954 -0.7659 -1.1377 13 1 1.6038 -0.3459 -2.0642 14 6 1.5404 -2.2346 -1.0143 15 16 2.9691 -2.9583 -0.1227 16 8 3.3832 -4.1849 -0.7087 17 8 2.8445 -2.8015 1.2841 18 6 4.1774 -1.7588 -0.6288 19 6 5.5556 -1.7919 -0.5710 20 6 6.2977 -0.7251 -1.0407 21 6 5.6402 0.3722 -1.5683 22 17 6.5553 1.7206 -2.1669 23 6 4.2644 0.4013 -1.6218 24 6 3.5014 -0.6695 -1.1466 25 1 -0.3634 0.4111 -0.9418 26 1 -0.3633 -1.0213 0.1148 27 1 -0.3634 0.6101 0.8270 28 1 1.5609 1.9274 -0.8310 29 1 3.0797 1.3445 -0.1083 30 1 2.9862 4.9181 0.7769 31 1 0.6272 -2.3162 -0.4250 32 1 1.4159 -2.6923 -1.9957 33 1 6.0562 -2.6545 -0.1568 34 1 7.3766 -0.7473 -0.9966 35 1 3.7669 1.2657 -2.0364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155502018.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:31 Heat of formation + Delta-G solvation = -48.107424 kcal Electronic energy + Delta-G solvation = -22531.372021 eV Core-core repulsion = 19068.331517 eV Total energy + Delta-G solvation = -3463.040504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13965 -38.73096 -38.06606 -37.48693 -36.97579 -35.10488 -33.56057 -32.12287 -30.98327 -28.74071 -27.31376 -24.75211 -24.40799 -23.42493 -21.57661 -20.11687 -18.56261 -18.40108 -17.85000 -17.60477 -17.10930 -16.62977 -16.37476 -16.07652 -15.86185 -15.21137 -15.11208 -14.60011 -14.23561 -14.08357 -13.80404 -13.73880 -13.64190 -13.25927 -13.11188 -13.05709 -12.78272 -12.72127 -12.69846 -12.50431 -12.21813 -12.07752 -11.87490 -11.78406 -11.47524 -11.24891 -10.60717 -10.14464 -10.02843 -9.11865 -8.19494 -6.26467 -0.89317 -0.41236 0.02994 0.91371 1.39634 1.42409 1.49384 1.63899 2.17650 2.39653 2.52903 2.99583 3.13664 3.17639 3.28278 3.57110 3.67138 3.93011 4.16919 4.20754 4.28304 4.43657 4.49899 4.61388 4.66602 4.73908 4.76854 4.91848 5.00609 5.14666 5.17777 5.35678 5.54542 5.63547 6.02201 6.21446 6.48557 6.86509 7.41052 8.90292 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.006712 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.010583 B = 4170.835967 C = 5926.340167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.196 3.804 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.008 3.992 7 N -0.925 5.925 8 Si 0.957 3.043 9 H -0.284 1.284 10 H -0.266 1.266 11 H -0.275 1.275 12 C 0.103 3.897 13 H 0.091 0.909 14 C -0.542 4.542 15 S 2.486 3.514 16 O -0.956 6.956 17 O -0.953 6.953 18 C -0.633 4.633 19 C -0.004 4.004 20 C -0.122 4.122 21 C -0.002 4.002 22 Cl -0.058 7.058 23 C -0.109 4.109 24 C -0.019 4.019 25 H 0.028 0.972 26 H 0.094 0.906 27 H 0.062 0.938 28 H -0.029 1.029 29 H 0.031 0.969 30 H 0.262 0.738 31 H 0.177 0.823 32 H 0.193 0.807 33 H 0.169 0.831 34 H 0.175 0.825 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 -12.214 -7.644 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C 0.070 3.930 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.783 3.217 9 H -0.210 1.210 10 H -0.191 1.191 11 H -0.201 1.201 12 C -0.006 4.006 13 H 0.109 0.891 14 C -0.675 4.675 15 S 2.669 3.331 16 O -0.953 6.953 17 O -0.950 6.950 18 C -0.719 4.719 19 C -0.023 4.023 20 C -0.141 4.141 21 C -0.028 4.028 22 Cl -0.029 7.029 23 C -0.129 4.129 24 C -0.021 4.021 25 H 0.047 0.953 26 H 0.113 0.887 27 H 0.081 0.919 28 H -0.011 1.011 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.195 0.805 32 H 0.211 0.789 33 H 0.187 0.813 34 H 0.192 0.808 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.250 -12.930 -6.715 14.743 hybrid contribution -0.162 2.640 -0.493 2.691 sum 2.088 -10.290 -7.208 12.736 Atomic orbital electron populations 1.22473 0.85914 1.02705 1.00970 1.62284 1.09422 1.16511 1.38866 1.19694 0.95614 0.82627 0.95061 1.21430 1.34959 0.97351 1.02631 0.92121 1.25732 0.95201 0.98066 1.00051 1.70042 1.39017 1.11733 1.35702 0.85620 0.78926 0.77249 0.79955 1.20964 1.19092 1.20077 1.20807 0.88689 0.94146 0.96949 0.89110 1.30477 1.17135 1.02472 1.17395 1.06048 0.78258 0.73605 0.75224 1.93549 1.80938 1.41675 1.79119 1.93617 1.85982 1.86321 1.29120 1.30781 1.09290 1.17237 1.14565 1.20595 0.90419 0.98397 0.92874 1.21559 1.02257 0.91522 0.98792 1.21022 0.91977 0.90594 0.99244 1.98381 1.73397 1.44854 1.86218 1.20939 0.92539 0.98422 1.00999 1.20364 0.94693 0.93220 0.93819 0.95302 0.88746 0.91910 1.01091 0.95103 0.92880 0.80549 0.78930 0.81342 0.80772 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.13 127.69 1.17 2.03 16 2 N -0.55 -21.14 4.62 -903.11 -4.17 -25.31 16 3 C 0.20 9.66 4.07 85.55 0.35 10.01 16 4 C -0.53 -28.96 8.42 25.60 0.22 -28.74 16 5 H 0.06 3.32 7.14 -2.91 -0.02 3.30 16 6 C 0.01 0.46 5.46 84.65 0.46 0.92 16 7 N -0.92 -53.95 13.29 21.45 0.28 -53.67 16 8 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 C 0.10 3.08 2.36 44.66 0.11 3.18 16 13 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 14 C -0.54 -10.78 7.08 72.41 0.51 -10.27 16 15 S 2.49 68.15 6.15 -56.49 -0.35 67.80 16 16 O -0.96 -27.62 18.01 -127.80 -2.30 -29.92 16 17 O -0.95 -34.48 18.01 -127.80 -2.30 -36.79 16 18 C -0.63 -19.26 6.16 22.22 0.14 -19.12 16 19 C 0.00 -0.11 10.02 22.20 0.22 0.11 16 20 C -0.12 -3.22 9.87 22.29 0.22 -3.00 16 21 C 0.00 -0.05 6.29 22.18 0.14 0.09 16 22 Cl -0.06 -1.73 28.94 -2.72 -0.08 -1.80 16 23 C -0.11 -3.83 7.49 22.52 0.17 -3.67 16 24 C -0.02 -0.62 4.74 -19.41 -0.09 -0.71 16 25 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 2.21 6.09 -2.39 -0.01 2.19 16 27 H 0.06 2.33 6.71 -2.39 -0.02 2.32 16 28 H -0.03 -1.51 8.12 -2.38 -0.02 -1.53 16 29 H 0.03 1.63 4.77 -2.38 -0.01 1.62 16 30 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 31 H 0.18 2.85 5.83 -2.39 -0.01 2.83 16 32 H 0.19 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.17 3.37 8.06 -2.91 -0.02 3.34 16 34 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 35 H 0.12 4.72 7.61 -2.91 -0.02 4.70 16 Total: -1.00 -74.37 316.07 -2.16 -76.52 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.13 Total: 6.09 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 3.60 Total: -49.16 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -3.89 Total: -78.97 kcal Atomic # 8 Polarization: -62.10 SS G_CDS: -4.60 Total: -66.71 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 68.15 SS G_CDS: -0.35 Total: 67.80 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.80 kcal Total: -74.37 -2.16 -76.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155502018.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.415 kcal (2) G-P(sol) polarization free energy of solvation -74.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds