Wall clock time and date at job start Tue Mar 31 2020 11:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00521 * 2 1 4 4 O 1.20827 * 119.99352 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00142 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.46901 * 179.97438 * 5 3 2 7 7 C 1.36891 * 120.00199 * 281.37223 * 6 5 3 8 8 H 1.07995 * 120.00045 * 316.37176 * 7 6 5 9 9 C 1.39032 * 119.99973 * 136.36510 * 7 6 5 10 10 N 1.31378 * 119.99715 * 337.70187 * 9 7 6 11 11 Si 1.86800 * 119.99962 * 157.70438 * 9 7 6 12 12 H 1.48497 * 109.47124 * 65.00318 * 11 9 7 13 13 H 1.48498 * 109.46833 * 185.00459 * 11 9 7 14 14 H 1.48497 * 109.46930 * 304.99815 * 11 9 7 15 15 C 1.34780 * 119.99879 * 101.37941 * 6 5 3 16 16 O 1.21607 * 119.99785 * 187.13713 * 15 6 5 17 17 C 1.47577 * 120.00084 * 6.85520 * 15 6 5 18 18 C 1.39741 * 120.16764 * 321.47628 * 17 15 6 19 19 C 1.37841 * 119.89590 * 179.78662 * 18 17 15 20 20 C 1.38460 * 120.23541 * 0.49017 * 19 18 17 21 21 C 1.38321 * 120.34053 * 359.74009 * 20 19 18 22 22 Cl 1.73595 * 119.95513 * 179.97438 * 21 20 19 23 23 C 1.38420 * 120.09678 * 0.02562 * 21 20 19 24 24 F 1.35098 * 120.11578 * 179.97438 * 23 21 20 25 25 H 1.08997 * 109.46842 * 59.99813 * 1 2 3 26 26 H 1.08999 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47326 * 300.00177 * 1 2 3 28 28 H 1.09005 * 109.47399 * 60.00320 * 5 3 2 29 29 H 1.08999 * 109.47256 * 299.99798 * 5 3 2 30 30 H 0.96998 * 119.99697 * 185.05009 * 10 9 7 31 31 H 1.07998 * 120.05274 * 359.97438 * 18 17 15 32 32 H 1.07997 * 119.88232 * 180.20450 * 19 18 17 33 33 H 1.07994 * 119.83466 * 179.75971 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 3.9522 3.4015 -1.1628 8 1 4.3171 2.9633 -2.0800 9 6 3.4522 4.6988 -1.1631 10 7 2.6286 5.0855 -0.2153 11 14 3.9513 5.8919 -2.5109 12 1 3.4342 5.4085 -3.8163 13 1 3.3842 7.2331 -2.2197 14 1 5.4324 5.9827 -2.5681 15 6 4.3932 3.2612 1.1439 16 8 4.6138 4.4568 1.1731 17 6 4.5701 2.4484 2.3629 18 6 3.6704 1.4206 2.6583 19 6 3.8435 0.6620 3.7960 20 6 4.8998 0.9211 4.6528 21 6 5.7934 1.9391 4.3725 22 17 7.1138 2.2557 5.4540 23 6 5.6356 2.7064 3.2313 24 9 6.5078 3.7011 2.9573 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.9564 0.7804 -0.8892 29 1 3.9557 0.7808 0.8908 30 1 2.2225 5.9655 -0.2550 31 1 2.8426 1.2191 1.9946 32 1 3.1500 -0.1343 4.0224 33 1 5.0270 0.3252 5.5445 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155670274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:05 Heat of formation + Delta-G solvation = -121.910129 kcal Electronic energy + Delta-G solvation = -24705.405970 eV Core-core repulsion = 20672.951965 eV Total energy + Delta-G solvation = -4032.454005 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.00875 -41.74903 -40.57590 -39.27021 -37.57147 -37.34077 -36.09390 -34.20236 -32.10023 -31.58593 -30.01399 -27.77324 -26.96960 -24.59063 -23.87543 -22.38925 -21.42689 -19.25385 -18.67549 -18.58118 -18.20347 -17.65632 -17.37089 -17.12036 -16.86921 -16.62237 -16.22213 -15.83271 -15.65051 -15.06078 -14.60698 -14.45993 -14.21428 -14.03596 -14.02243 -13.47223 -13.23322 -13.15323 -12.85503 -12.76152 -12.70499 -12.58034 -12.26021 -12.12777 -12.10711 -11.62331 -11.38470 -10.86896 -10.41660 -9.97217 -9.79785 -9.32284 -8.20489 -6.01822 -0.30180 -0.13887 0.86783 1.34427 1.37364 1.44213 1.47437 1.65615 2.16352 2.29309 2.62357 2.82812 3.03738 3.24643 3.58000 3.76922 3.91035 4.06030 4.11294 4.18383 4.40435 4.44313 4.45120 4.48334 4.76987 4.80024 4.82033 4.99087 5.15270 5.44314 5.50120 5.57356 6.08930 6.85400 6.97398 7.07192 7.48327 8.09956 8.85000 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.006243 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.099804 B = 4484.093537 C = 6391.834053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.428 3.572 4 O -0.498 6.498 5 C 0.089 3.911 6 N -0.432 5.432 7 C -0.379 4.379 8 H 0.094 0.906 9 C 0.030 3.970 10 N -0.834 5.834 11 Si 0.968 3.032 12 H -0.256 1.256 13 H -0.291 1.291 14 H -0.275 1.275 15 C 0.497 3.503 16 O -0.564 6.564 17 C -0.152 4.152 18 C -0.085 4.085 19 C -0.093 4.093 20 C -0.056 4.056 21 C -0.078 4.078 22 Cl -0.044 7.044 23 C 0.117 3.883 24 F -0.137 7.137 25 H 0.046 0.954 26 H 0.141 0.859 27 H 0.054 0.946 28 H 0.127 0.873 29 H 0.143 0.857 30 H 0.255 0.745 31 H 0.133 0.867 32 H 0.194 0.806 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 -17.259 8.719 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.268 3.732 4 O -0.383 6.383 5 C -0.035 4.035 6 N -0.153 5.153 7 C -0.506 4.506 8 H 0.112 0.888 9 C -0.180 4.180 10 N -0.466 5.466 11 Si 0.793 3.207 12 H -0.180 1.180 13 H -0.217 1.217 14 H -0.201 1.201 15 C 0.287 3.713 16 O -0.445 6.445 17 C -0.157 4.157 18 C -0.104 4.104 19 C -0.111 4.111 20 C -0.075 4.075 21 C -0.106 4.106 22 Cl -0.015 7.015 23 C 0.095 3.905 24 F -0.115 7.115 25 H 0.065 0.935 26 H 0.159 0.841 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.160 0.840 30 H 0.064 0.936 31 H 0.150 0.850 32 H 0.211 0.789 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.163 -16.087 8.898 18.384 hybrid contribution 0.010 1.771 -0.915 1.993 sum 0.173 -14.316 7.982 16.392 Atomic orbital electron populations 1.23446 0.75754 1.05456 1.01670 1.86503 1.24215 1.32511 1.84583 1.24917 0.93371 0.81665 0.73241 1.90851 1.66948 1.37344 1.43175 1.21992 0.86694 0.86938 1.07907 1.42998 1.55403 1.09134 1.07737 1.19254 1.45321 0.97573 0.88460 0.88816 1.26120 0.93113 1.00270 0.98519 1.70067 1.23539 1.18927 1.34044 0.85417 0.78610 0.77621 0.79085 1.18005 1.21744 1.20077 1.18294 0.81686 0.87389 0.83953 1.90637 1.53471 1.16300 1.84055 1.20371 0.97870 1.00369 0.97078 1.21675 0.97052 0.92946 0.98725 1.21606 0.98067 1.00069 0.91334 1.21579 0.91178 0.93756 1.00961 1.21056 0.96259 1.00856 0.92439 1.98372 1.45769 1.95379 1.61996 1.17689 0.89637 0.88241 0.94902 1.91508 1.67183 1.59161 1.93651 0.93537 0.84117 0.92679 0.85532 0.83998 0.93563 0.84963 0.78888 0.79171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.89 16 2 O -0.36 -10.43 10.56 -51.38 -0.54 -10.97 16 3 C 0.43 16.45 6.03 71.23 0.43 16.88 16 4 O -0.50 -24.78 15.86 21.96 0.35 -24.43 16 5 C 0.09 3.31 5.47 85.63 0.47 3.78 16 6 N -0.43 -21.95 2.13 -643.17 -1.37 -23.32 16 7 C -0.38 -21.28 8.80 84.09 0.74 -20.54 16 8 H 0.09 4.89 7.93 -2.91 -0.02 4.87 16 9 C 0.03 1.78 4.25 84.95 0.36 2.14 16 10 N -0.83 -53.13 11.75 21.68 0.25 -52.87 16 11 Si 0.97 47.20 29.61 68.60 2.03 49.23 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 14 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 15 C 0.50 26.77 6.69 86.71 0.58 27.35 16 16 O -0.56 -36.30 13.69 -4.05 -0.06 -36.36 16 17 C -0.15 -6.29 5.38 -20.06 -0.11 -6.39 16 18 C -0.09 -2.60 7.35 22.54 0.17 -2.43 16 19 C -0.09 -1.78 10.03 22.23 0.22 -1.56 16 20 C -0.06 -1.07 9.82 22.34 0.22 -0.85 16 21 C -0.08 -2.20 6.32 22.33 0.14 -2.06 16 22 Cl -0.04 -1.12 28.61 -2.72 -0.08 -1.19 16 23 C 0.12 4.51 7.22 22.71 0.16 4.67 16 24 F -0.14 -6.21 15.78 44.97 0.71 -5.50 16 25 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 26 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 28 H 0.13 4.00 8.13 -2.38 -0.02 3.98 16 29 H 0.14 4.29 4.30 -2.39 -0.01 4.28 16 30 H 0.26 15.84 8.32 -92.71 -0.77 15.07 16 31 H 0.13 4.20 4.15 -2.91 -0.01 4.19 16 32 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -86.20 310.55 7.06 -79.14 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.18 Total: 3.37 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 4.58 Total: 22.89 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -1.11 Total: -76.19 kcal Atomic # 8 Polarization: -71.50 SS G_CDS: -0.25 Total: -71.75 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.71 Total: -5.50 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.19 kcal Total: -86.20 7.06 -79.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155670274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.773 kcal (2) G-P(sol) polarization free energy of solvation -86.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds