Wall clock time and date at job start Tue Mar 31 2020 11:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99710 * 2 1 4 4 O 1.20824 * 120.00533 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99469 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46768 * 180.02562 * 5 3 2 7 7 C 1.36891 * 119.99838 * 264.78992 * 6 5 3 8 8 H 1.08001 * 120.00708 * 138.38655 * 7 6 5 9 9 C 1.39035 * 119.99680 * 318.38170 * 7 6 5 10 10 N 1.31373 * 120.00083 * 161.56109 * 9 7 6 11 11 Si 1.86802 * 120.00189 * 341.56191 * 9 7 6 12 12 H 1.48501 * 109.47028 * 93.49761 * 11 9 7 13 13 H 1.48497 * 109.46984 * 213.49617 * 11 9 7 14 14 H 1.48494 * 109.46769 * 333.49652 * 11 9 7 15 15 C 1.34773 * 120.00253 * 84.78430 * 6 5 3 16 16 O 1.21604 * 120.00213 * 5.15563 * 15 6 5 17 17 C 1.47612 * 119.99857 * 185.14733 * 15 6 5 18 18 C 1.39732 * 120.11775 * 143.24007 * 17 15 6 19 19 C 1.37820 * 119.89580 * 180.02562 * 18 17 15 20 20 C 1.38655 * 120.14124 * 0.02562 * 19 18 17 21 21 F 1.35094 * 119.87524 * 180.28262 * 20 19 18 22 22 C 1.38745 * 120.24084 * 0.02562 * 20 19 18 23 23 Cl 1.73601 * 119.95049 * 179.97438 * 22 20 19 24 24 C 1.37948 * 120.10366 * 359.97438 * 22 20 19 25 25 H 1.08999 * 109.46822 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46791 * 300.00067 * 1 2 3 27 27 H 1.09007 * 109.46560 * 59.99827 * 1 2 3 28 28 H 1.08999 * 109.47426 * 60.00565 * 5 3 2 29 29 H 1.08999 * 109.46909 * 299.99674 * 5 3 2 30 30 H 0.96998 * 120.00492 * 179.97438 * 10 9 7 31 31 H 1.08006 * 120.05001 * 359.97438 * 18 17 15 32 32 H 1.08003 * 119.92566 * 180.02562 * 19 18 17 33 33 H 1.07997 * 120.07167 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.2785 3.3063 -1.1802 8 1 3.9438 4.3185 -1.3535 9 6 5.0110 2.6398 -2.1560 10 7 4.9937 3.0685 -3.3977 11 14 6.0196 1.1346 -1.7016 12 1 5.2114 -0.0902 -1.9297 13 1 7.2418 1.0850 -2.5437 14 1 6.4074 1.2124 -0.2703 15 6 4.0715 3.3553 1.1629 16 8 3.8994 2.7756 2.2178 17 6 4.3790 4.7991 1.1557 18 6 3.7764 5.6489 2.0869 19 6 4.0663 6.9962 2.0757 20 6 4.9540 7.5096 1.1425 21 9 5.2388 8.8302 1.1401 22 6 5.5549 6.6712 0.2146 23 17 6.6647 7.3222 -0.9509 24 6 5.2719 5.3211 0.2167 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 3.9558 0.7810 -0.8908 29 1 3.9564 0.7806 0.8892 30 1 5.5050 2.6037 -4.0785 31 1 3.0837 5.2507 2.8136 32 1 3.6011 7.6535 2.7955 33 1 5.7396 4.6690 -0.5060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160990570.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:51 Heat of formation + Delta-G solvation = -137.362442 kcal Electronic energy + Delta-G solvation = -24168.418704 eV Core-core repulsion = 20135.294636 eV Total energy + Delta-G solvation = -4033.124068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.051 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.05964 -41.87817 -40.94960 -39.28292 -37.65476 -37.43563 -36.87458 -34.09116 -32.45206 -31.79573 -30.20312 -27.95727 -27.11903 -24.49242 -24.10386 -22.53801 -21.26099 -19.83547 -19.02772 -18.68208 -18.56358 -17.69521 -17.48849 -17.21736 -16.86639 -16.70281 -16.61589 -15.78963 -15.56960 -15.04655 -14.83693 -14.63553 -14.49708 -14.41728 -14.19168 -13.91313 -13.65933 -13.49594 -12.99383 -12.92244 -12.54961 -12.48929 -12.30330 -12.03098 -11.95251 -11.82314 -11.70351 -11.29310 -10.75732 -10.06933 -9.89809 -9.74431 -8.54197 -6.25848 -0.36406 0.06965 0.96088 1.11328 1.19935 1.31024 1.40594 1.47310 1.84973 2.13875 2.36676 2.52829 2.91332 2.99625 3.61717 3.72319 3.88770 3.93361 4.09102 4.16087 4.20149 4.30846 4.31038 4.48468 4.65320 4.77719 4.93158 4.95842 5.16978 5.28309 5.30862 5.60484 5.95617 6.08676 6.69176 6.79849 7.14917 7.48860 8.56909 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.005563 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.634773 B = 5032.071125 C = 6289.601005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.453 3.547 4 O -0.524 6.524 5 C 0.097 3.903 6 N -0.449 5.449 7 C -0.351 4.351 8 H 0.084 0.916 9 C 0.037 3.963 10 N -0.879 5.879 11 Si 0.905 3.095 12 H -0.245 1.245 13 H -0.276 1.276 14 H -0.251 1.251 15 C 0.534 3.466 16 O -0.597 6.597 17 C -0.124 4.124 18 C -0.040 4.040 19 C -0.138 4.138 20 C 0.119 3.881 21 F -0.126 7.126 22 C -0.097 4.097 23 Cl -0.053 7.053 24 C -0.032 4.032 25 H 0.140 0.860 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.117 0.883 29 H 0.130 0.870 30 H 0.285 0.715 31 H 0.154 0.846 32 H 0.186 0.814 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 0.026 6.596 6.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.295 3.705 4 O -0.412 6.412 5 C -0.027 4.027 6 N -0.169 5.169 7 C -0.478 4.478 8 H 0.101 0.899 9 C -0.170 4.170 10 N -0.514 5.514 11 Si 0.728 3.272 12 H -0.170 1.170 13 H -0.202 1.202 14 H -0.174 1.174 15 C 0.326 3.674 16 O -0.482 6.482 17 C -0.127 4.127 18 C -0.059 4.059 19 C -0.157 4.157 20 C 0.099 3.901 21 F -0.104 7.104 22 C -0.124 4.124 23 Cl -0.024 7.024 24 C -0.051 4.051 25 H 0.158 0.842 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.148 0.852 30 H 0.095 0.905 31 H 0.172 0.828 32 H 0.203 0.797 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.756 0.104 6.762 6.987 hybrid contribution 0.322 -0.196 -0.740 0.831 sum -1.434 -0.092 6.022 6.191 Atomic orbital electron populations 1.23569 0.74768 1.05899 1.02265 1.86490 1.25204 1.32264 1.84030 1.24548 0.92766 0.81681 0.71528 1.90606 1.67278 1.37511 1.45790 1.21563 0.87629 0.87149 1.06347 1.43249 1.58017 1.09164 1.06466 1.18908 1.35344 1.01413 0.92148 0.89873 1.25897 0.96507 1.00436 0.94138 1.69774 1.38340 1.42100 1.01157 0.86428 0.79917 0.80511 0.80390 1.16969 1.20169 1.17439 1.18410 0.78472 0.87559 0.82952 1.90640 1.55854 1.70333 1.31396 1.19814 1.00806 0.93573 0.98519 1.21303 0.96737 0.92062 0.95843 1.21237 0.98834 0.95792 0.99804 1.17701 0.98068 0.77648 0.96699 1.91519 1.92153 1.30946 1.95794 1.20959 1.00672 0.94130 0.96682 1.98360 1.60670 1.85859 1.57486 1.21761 0.94788 0.92857 0.95679 0.84162 0.92150 0.92459 0.86559 0.85207 0.90510 0.82829 0.79670 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.36 -12.16 10.57 -51.42 -0.54 -12.70 16 3 C 0.45 18.60 7.99 71.24 0.57 19.17 16 4 O -0.52 -24.63 16.06 21.97 0.35 -24.27 16 5 C 0.10 4.01 4.57 85.63 0.39 4.40 16 6 N -0.45 -20.70 1.65 -643.12 -1.06 -21.76 16 7 C -0.35 -17.34 6.64 84.09 0.56 -16.78 16 8 H 0.08 4.54 6.56 -2.91 -0.02 4.52 16 9 C 0.04 1.80 5.30 84.95 0.45 2.25 16 10 N -0.88 -45.51 13.95 21.68 0.30 -45.21 16 11 Si 0.90 36.38 25.04 68.60 1.72 38.10 16 12 H -0.24 -8.94 6.66 99.48 0.66 -8.28 16 13 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 14 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 15 C 0.53 24.17 7.17 86.72 0.62 24.80 16 16 O -0.60 -28.08 16.50 -4.04 -0.07 -28.15 16 17 C -0.12 -4.95 5.43 -20.09 -0.11 -5.05 16 18 C -0.04 -1.30 9.61 22.53 0.22 -1.08 16 19 C -0.14 -3.69 10.01 22.27 0.22 -3.47 16 20 C 0.12 3.65 7.28 22.49 0.16 3.82 16 21 F -0.13 -3.64 16.82 44.97 0.76 -2.88 16 22 C -0.10 -3.41 6.32 22.32 0.14 -3.27 16 23 Cl -0.05 -1.77 28.60 -2.72 -0.08 -1.85 16 24 C -0.03 -1.26 7.53 22.55 0.17 -1.09 16 25 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 27 H 0.06 1.47 8.13 -2.38 -0.02 1.45 16 28 H 0.12 4.61 3.76 -2.39 -0.01 4.60 16 29 H 0.13 4.84 7.51 -2.39 -0.02 4.82 16 30 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 31 H 0.15 4.53 8.02 -2.91 -0.02 4.50 16 32 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.16 6.90 5.78 -2.91 -0.02 6.89 16 Total: -1.00 -61.41 310.90 7.11 -54.29 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 1.14 Total: 18.84 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 4.59 Total: 25.59 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -0.76 Total: -66.96 kcal Atomic # 8 Polarization: -64.87 SS G_CDS: -0.26 Total: -65.13 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.76 Total: -2.88 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 1.72 Total: 38.10 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Total: -61.41 7.11 -54.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160990570.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.068 kcal (2) G-P(sol) polarization free energy of solvation -61.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds