Wall clock time and date at job start Tue Mar 31 2020 10:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99446 * 2 1 4 4 H 1.48493 * 109.46802 * 239.99474 * 3 2 1 5 5 H 1.48496 * 109.47475 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46905 * 119.99868 * 3 2 1 7 7 C 1.37874 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00094 * 0.02562 * 7 2 1 10 10 O 1.42903 * 113.41387 * 46.79848 * 9 7 2 11 11 C 1.53496 * 114.20605 * 179.97438 * 9 7 2 12 12 N 1.47065 * 87.98588 * 139.65322 * 11 9 7 13 13 C 1.34779 * 136.05802 * 152.84008 * 12 11 9 14 14 O 1.21282 * 119.99927 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00033 * 180.02562 * 13 12 11 16 16 C 1.53006 * 109.46866 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 13 18 18 C 1.33353 * 125.18998 * 89.99709 * 17 16 15 19 19 C 1.38468 * 114.92963 * 179.97438 * 18 17 16 20 20 C 1.33504 * 114.88494 * 0.02562 * 19 18 17 21 21 Cl 1.73600 * 125.20690 * 179.97438 * 20 19 18 22 22 S 1.75878 * 125.18908 * 269.69468 * 17 16 15 23 23 C 1.47059 * 87.88483 * 333.10350 * 12 11 9 24 24 H 0.96998 * 120.00556 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00033 * 313.19962 * 10 9 7 26 26 H 1.09004 * 113.46501 * 24.87468 * 11 9 7 27 27 H 1.09000 * 113.46982 * 254.43745 * 11 9 7 28 28 H 1.08993 * 109.47512 * 60.00410 * 15 13 12 29 29 H 1.09000 * 109.47247 * 300.00119 * 15 13 12 30 30 H 1.09000 * 109.47050 * 299.99952 * 16 15 13 31 31 H 1.09001 * 109.46801 * 60.00064 * 16 15 13 32 32 H 1.07996 * 122.53375 * 359.97438 * 18 17 16 33 33 H 1.08002 * 122.56128 * 179.97438 * 19 18 17 34 34 H 1.09003 * 113.46963 * 141.68116 * 23 12 11 35 35 H 1.09005 * 113.46819 * 272.11593 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.1901 -2.5423 -0.9558 11 6 2.1489 -3.7441 0.0005 12 7 1.2101 -4.3574 0.9521 13 6 0.8348 -5.6113 1.2735 14 8 1.3289 -6.5583 0.6991 15 6 -0.1989 -5.8366 2.3467 16 6 -0.4409 -7.3381 2.5145 17 6 -1.4741 -7.5635 3.5881 18 6 -2.7902 -7.6351 3.3852 19 6 -3.5457 -7.8492 4.5256 20 6 -2.8414 -7.9509 5.6552 21 17 -3.5138 -8.2182 7.2333 22 16 -1.1276 -7.7798 5.2988 23 6 0.8562 -3.0001 1.3938 24 1 -0.4851 0.8400 -0.0004 25 1 -0.3736 -1.7565 -0.9536 26 1 3.1386 -3.5656 0.4211 27 1 2.1852 -4.2531 -0.9626 28 1 -1.1306 -5.3478 2.0622 29 1 0.1578 -5.4190 3.2882 30 1 -0.7974 -7.7561 1.5730 31 1 0.4910 -7.8266 2.7992 32 1 -3.2332 -7.5337 2.4055 33 1 -4.6227 -7.9271 4.5033 34 1 -0.2045 -2.8776 1.6130 35 1 1.4980 -2.6213 2.1893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186840395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:15 Heat of formation + Delta-G solvation = -43.296323 kcal Electronic energy + Delta-G solvation = -20809.988501 eV Core-core repulsion = 17347.156623 eV Total energy + Delta-G solvation = -3462.831879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30987 -39.48515 -38.91437 -37.65467 -35.87341 -34.62885 -34.11112 -30.98284 -29.37174 -27.31404 -26.82948 -25.59032 -23.59147 -21.78817 -20.43522 -19.90182 -19.26125 -18.58435 -17.69233 -17.22773 -16.94310 -16.68387 -16.46494 -15.94955 -15.41862 -14.82296 -14.79743 -14.55788 -14.31256 -14.05003 -13.77978 -13.64255 -13.44280 -13.38657 -13.19114 -12.77242 -12.74786 -12.32965 -12.30754 -12.21721 -12.14606 -11.89684 -11.68269 -11.38491 -10.93872 -10.63458 -10.22351 -9.59186 -9.57870 -9.52550 -8.26519 -6.43363 -0.23607 0.08041 0.80264 1.21821 1.49429 1.51675 1.58495 1.59176 1.63518 2.00525 2.41792 2.95559 3.37420 3.74315 3.88150 3.99895 4.05325 4.18724 4.29853 4.43048 4.48593 4.55840 4.64139 4.77500 4.82310 4.92671 4.94956 4.96403 5.05387 5.14710 5.26058 5.37199 5.73938 5.92216 6.62220 6.89841 7.13557 7.30743 7.50324 8.79294 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.020539 B = 0.002634 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.961248 B =10627.774429 C =11328.388916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.033 3.967 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.217 3.783 10 O -0.586 6.586 11 C 0.105 3.895 12 N -0.638 5.638 13 C 0.529 3.471 14 O -0.596 6.596 15 C -0.117 4.117 16 C -0.025 4.025 17 C -0.169 4.169 18 C -0.132 4.132 19 C -0.113 4.113 20 C -0.166 4.166 21 Cl -0.014 7.014 22 S 0.145 5.855 23 C 0.087 3.913 24 H 0.277 0.723 25 H 0.389 0.611 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.065 0.935 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.601 -11.355 12.251 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.168 4.168 3 Si 0.794 3.206 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.092 0.908 9 C 0.176 3.824 10 O -0.399 6.399 11 C -0.018 4.018 12 N -0.371 5.371 13 C 0.321 3.679 14 O -0.478 6.478 15 C -0.157 4.157 16 C -0.065 4.065 17 C -0.287 4.287 18 C -0.161 4.161 19 C -0.145 4.145 20 C -0.309 4.309 21 Cl 0.014 6.986 22 S 0.408 5.592 23 C -0.036 4.036 24 H 0.087 0.913 25 H 0.245 0.755 26 H 0.120 0.880 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.181 0.819 33 H 0.185 0.815 34 H 0.084 0.916 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.077 -12.575 12.929 18.737 hybrid contribution -1.230 1.398 -0.662 1.976 sum -6.308 -11.177 12.267 17.754 Atomic orbital electron populations 1.69312 1.07112 1.29024 1.50285 1.25751 0.95767 1.02618 0.92631 0.85429 0.78259 0.77978 0.78906 1.20076 1.20852 1.19161 1.21630 0.94185 0.90568 1.52700 0.90794 1.19771 0.85522 0.91662 0.85436 1.86030 1.45514 1.48114 1.60281 1.23322 0.94680 0.91504 0.92256 1.49798 1.42079 1.05309 1.39899 1.20800 0.83221 0.79998 0.83884 1.90623 1.59399 1.41336 1.56469 1.21564 0.98307 0.98238 0.97605 1.19777 0.96513 0.94225 0.95952 1.24553 0.98498 1.08639 0.97040 1.20263 0.91895 1.03169 1.00800 1.20424 1.02810 1.01446 0.89792 1.25365 0.97777 1.16048 0.91714 1.98364 1.83848 1.94985 1.21402 1.84465 1.02269 1.71038 1.01416 1.23949 1.00670 0.77609 1.01380 0.91339 0.75481 0.87990 0.92977 0.87756 0.87568 0.89085 0.90256 0.81865 0.81511 0.91643 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.98 11.01 21.45 0.24 -44.74 16 2 C 0.03 1.57 5.40 84.65 0.46 2.03 16 3 Si 0.97 38.26 29.54 68.60 2.03 40.29 16 4 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 5 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.55 -26.74 8.69 25.60 0.22 -26.52 16 8 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16 9 C 0.22 10.13 1.57 -11.30 -0.02 10.11 16 10 O -0.59 -29.92 13.53 -148.98 -2.02 -31.93 16 11 C 0.11 4.48 8.03 83.17 0.67 5.15 16 12 N -0.64 -25.60 3.69 -859.38 -3.17 -28.78 16 13 C 0.53 19.84 8.08 87.66 0.71 20.54 16 14 O -0.60 -25.79 16.76 -3.04 -0.05 -25.84 16 15 C -0.12 -3.18 5.51 29.85 0.16 -3.01 16 16 C -0.02 -0.59 5.00 29.85 0.15 -0.45 16 17 C -0.17 -3.50 5.76 24.58 0.14 -3.36 16 18 C -0.13 -2.42 10.05 21.22 0.21 -2.20 16 19 C -0.11 -1.95 10.13 21.25 0.22 -1.73 16 20 C -0.17 -3.15 7.10 66.75 0.47 -2.67 16 21 Cl -0.01 -0.25 29.29 -2.72 -0.08 -0.33 16 22 S 0.15 2.86 23.33 -56.49 -1.32 1.55 16 23 C 0.09 3.50 7.82 83.08 0.65 4.15 16 24 H 0.28 12.90 8.31 -92.71 -0.77 12.13 16 25 H 0.39 20.12 6.33 -74.06 -0.47 19.65 16 26 H 0.10 3.93 8.10 -2.39 -0.02 3.91 16 27 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.09 2.24 8.10 -2.39 -0.02 2.22 16 31 H 0.08 1.96 8.10 -2.39 -0.02 1.94 16 32 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 34 H 0.07 2.61 8.14 -2.39 -0.02 2.60 16 35 H 0.09 3.55 8.10 -2.38 -0.02 3.53 16 Total: -1.00 -56.52 335.13 0.33 -56.19 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.66 Total: 31.54 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 4.04 Total: 2.05 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -2.94 Total: -73.51 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -2.07 Total: -57.77 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.32 Total: 1.55 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.08 Total: -0.33 kcal Total: -56.52 0.33 -56.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186840395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.897 kcal (2) G-P(sol) polarization free energy of solvation -56.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds