Wall clock time and date at job start Tue Mar 31 2020 10:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47377 * 2 1 4 4 C 1.46896 * 110.99729 * 199.71147 * 3 2 1 5 5 C 1.50704 * 109.46960 * 66.05188 * 4 3 2 6 6 H 1.07994 * 120.00001 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99685 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99809 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00232 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47002 * 89.99928 * 9 7 5 11 11 H 1.48496 * 109.47439 * 209.99885 * 9 7 5 12 12 H 1.48504 * 109.47463 * 330.00420 * 9 7 5 13 13 C 1.46897 * 110.99654 * 75.76110 * 3 2 1 14 14 C 1.50703 * 109.47082 * 199.76777 * 13 3 2 15 15 C 1.38264 * 119.97467 * 264.43589 * 14 13 3 16 16 C 1.38215 * 120.05758 * 179.97438 * 15 14 13 17 17 C 1.38304 * 120.01883 * 0.02562 * 16 15 14 18 18 Br 1.89096 * 120.02580 * 180.27844 * 17 16 15 19 19 C 1.38528 * 119.94845 * 359.97438 * 17 16 15 20 20 F 1.35098 * 120.02357 * 180.02562 * 19 17 16 21 21 C 1.38186 * 119.98166 * 84.41126 * 14 13 3 22 22 H 1.08998 * 109.46623 * 54.85215 * 1 2 3 23 23 H 1.08995 * 109.46979 * 174.85631 * 1 2 3 24 24 H 1.08995 * 109.46673 * 294.85814 * 1 2 3 25 25 H 1.09003 * 109.46728 * 239.99733 * 2 1 3 26 26 H 1.09004 * 109.46775 * 120.00487 * 2 1 3 27 27 H 1.09004 * 109.47007 * 186.04719 * 4 3 2 28 28 H 1.08994 * 109.47640 * 306.04516 * 4 3 2 29 29 H 0.96996 * 120.00190 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47244 * 79.76865 * 13 3 2 31 31 H 1.08997 * 109.47401 * 319.76558 * 13 3 2 32 32 H 1.08005 * 119.97607 * 359.97358 * 15 14 13 33 33 H 1.08005 * 119.99231 * 180.02562 * 16 15 14 34 34 H 1.08000 * 120.00381 * 0.04672 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4125 1.4508 -0.4626 5 6 3.4797 1.0468 -1.9129 6 1 2.5781 0.7686 -2.4382 7 6 4.6923 1.0325 -2.5690 8 7 4.7510 0.6795 -3.8344 9 14 6.2516 1.5144 -1.6604 10 1 6.8551 0.3083 -1.0388 11 1 7.2166 2.1138 -2.6168 12 1 5.9228 2.5042 -0.6032 13 6 1.8772 1.9937 1.3293 14 6 1.9166 3.4947 1.2013 15 6 3.1058 4.1735 1.3935 16 6 3.1439 5.5501 1.2760 17 6 1.9921 6.2503 0.9664 18 35 2.0458 8.1330 0.7979 19 6 0.8004 5.5708 0.7738 20 9 -0.3255 6.2532 0.4709 21 6 0.7644 4.1918 0.8914 22 1 -0.3632 0.5916 -0.8403 23 1 -0.3633 -1.0235 -0.0921 24 1 -0.3632 0.4320 0.9324 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.7844 2.4694 -0.3515 28 1 4.0253 0.7735 0.1321 29 1 5.6040 0.6697 -4.2962 30 1 2.6942 1.6621 1.9703 31 1 0.9260 1.6913 1.7673 32 1 4.0057 3.6275 1.6356 33 1 4.0735 6.0791 1.4259 34 1 -0.1642 3.6610 0.7418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267370782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:07 Heat of formation + Delta-G solvation = -14.553137 kcal Electronic energy + Delta-G solvation = -18417.066722 eV Core-core repulsion = 15310.673474 eV Total energy + Delta-G solvation = -3106.393248 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.033 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.90112 -39.35089 -36.93378 -32.92771 -32.48245 -30.72087 -30.53989 -29.61267 -27.39221 -24.77012 -22.98208 -22.16020 -21.50063 -19.86513 -17.33390 -16.80229 -16.52094 -15.98210 -15.67867 -15.03557 -14.57034 -14.42100 -13.91941 -13.66749 -13.32004 -12.94611 -12.60919 -12.55363 -12.31815 -12.03416 -11.74498 -11.38460 -11.25921 -10.95860 -10.81992 -10.76899 -10.46234 -10.34888 -10.08954 -9.88048 -9.31605 -8.86960 -8.62147 -8.53894 -7.53383 -6.09280 -4.06647 0.96576 1.19191 1.50745 3.23170 3.30849 3.31988 3.46406 4.12309 4.37138 4.64488 4.68272 4.94058 5.13894 5.23454 5.27992 5.45870 5.57792 5.63482 5.80123 5.85439 5.89908 5.99518 6.03193 6.12291 6.23930 6.52658 6.59907 6.62649 6.77584 6.83113 6.90770 7.53993 7.80662 7.93889 8.59501 8.99503 9.52006 11.03853 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.004719 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.407480 B = 5932.116984 C = 7111.200803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 N -0.521 5.521 4 C 0.158 3.842 5 C -0.509 4.509 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.898 5.898 9 Si 0.872 3.128 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.082 3.918 14 C -0.014 4.014 15 C -0.115 4.115 16 C -0.064 4.064 17 C -0.136 4.136 18 Br -0.043 7.043 19 C 0.123 3.877 20 F -0.129 7.129 21 C -0.125 4.125 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.094 0.906 26 H 0.021 0.979 27 H 0.032 0.968 28 H -0.016 1.016 29 H 0.264 0.736 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 10.536 13.700 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.245 5.245 4 C 0.032 3.968 5 C -0.548 4.548 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.700 3.300 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.191 1.191 13 C -0.046 4.046 14 C -0.015 4.015 15 C -0.134 4.134 16 C -0.084 4.084 17 C -0.216 4.216 18 Br 0.042 6.958 19 C 0.102 3.898 20 F -0.107 7.107 21 C -0.145 4.145 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.112 0.888 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.002 0.998 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.298 11.495 13.132 18.554 hybrid contribution 1.309 -0.453 0.768 1.584 sum -4.988 11.042 13.900 18.439 Atomic orbital electron populations 1.21797 0.96265 1.00726 1.01410 1.22044 0.94574 0.89254 1.01468 1.61992 1.24265 1.17664 1.20620 1.20281 0.83442 0.96329 0.96720 1.21002 0.95409 1.44970 0.93373 0.90064 1.24888 0.98684 0.94925 0.94733 1.69882 1.25833 1.48399 1.09613 0.86907 0.83854 0.79200 0.80066 1.20355 1.21109 1.19138 1.21147 1.01460 0.89306 0.92705 1.19854 0.91926 0.96320 0.93386 1.21195 0.98247 0.93369 1.00598 1.20936 0.96358 0.94162 0.96943 1.21797 0.95956 0.91197 1.12688 1.96684 1.99125 1.02815 1.97211 1.17324 0.81561 0.90054 1.00876 1.91526 1.49092 1.79727 1.90393 1.20941 1.00632 0.90787 1.02167 0.91883 0.93085 0.93914 0.88788 0.96111 0.94966 0.99847 0.92627 0.93978 0.90150 0.84726 0.84339 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.96 37.16 0.37 -1.71 16 2 C 0.05 0.95 5.51 -3.82 -0.02 0.93 16 3 N -0.52 -10.00 4.34 -237.51 -1.03 -11.03 16 4 C 0.16 3.61 3.61 -4.98 -0.02 3.59 16 5 C -0.51 -13.97 8.79 -34.44 -0.30 -14.28 16 6 H 0.08 2.44 7.55 -52.49 -0.40 2.05 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 9 Si 0.87 20.90 27.47 -169.99 -4.67 16.23 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 13 C 0.08 1.24 4.94 -4.98 -0.02 1.22 16 14 C -0.01 -0.21 5.03 -104.63 -0.53 -0.73 16 15 C -0.11 -1.66 8.40 -39.58 -0.33 -1.99 16 16 C -0.06 -0.87 9.79 -39.57 -0.39 -1.26 16 17 C -0.14 -1.95 6.23 -39.45 -0.25 -2.19 16 18 Br -0.04 -0.56 33.28 -68.01 -2.26 -2.82 16 19 C 0.12 1.83 7.27 -39.40 -0.29 1.54 16 20 F -0.13 -1.93 16.73 2.25 0.04 -1.89 16 21 C -0.13 -1.82 9.70 -39.52 -0.38 -2.20 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.54 6.89 -51.93 -0.36 0.18 16 25 H 0.09 1.92 6.58 -51.93 -0.34 1.58 16 26 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 27 H 0.03 0.75 5.38 -51.93 -0.28 0.47 16 28 H -0.02 -0.37 7.55 -51.93 -0.39 -0.76 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.04 0.61 7.90 -51.93 -0.41 0.20 16 31 H 0.08 1.05 6.54 -51.93 -0.34 0.71 16 32 H 0.13 1.83 7.99 -52.48 -0.42 1.42 16 33 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 306.34 15.07 4.62 4.62 Total: -1.00 -29.36 306.34 -9.00 -38.36 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.21 Total: -1.95 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.26 Total: -15.20 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.26 Total: -37.34 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.26 Total: -2.82 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.36 -9.00 -38.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267370782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.806 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds