Wall clock time and date at job start Tue Mar 31 2020 10:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47377 * 2 1 4 4 C 1.46896 * 110.99729 * 199.71147 * 3 2 1 5 5 C 1.50704 * 109.46960 * 66.05188 * 4 3 2 6 6 H 1.07994 * 120.00001 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99685 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99809 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00232 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47002 * 89.99928 * 9 7 5 11 11 H 1.48496 * 109.47439 * 209.99885 * 9 7 5 12 12 H 1.48504 * 109.47463 * 330.00420 * 9 7 5 13 13 C 1.46897 * 110.99654 * 75.76110 * 3 2 1 14 14 C 1.50703 * 109.47082 * 199.76777 * 13 3 2 15 15 C 1.38264 * 119.97467 * 264.43589 * 14 13 3 16 16 C 1.38215 * 120.05758 * 179.97438 * 15 14 13 17 17 C 1.38304 * 120.01883 * 0.02562 * 16 15 14 18 18 Br 1.89096 * 120.02580 * 180.27844 * 17 16 15 19 19 C 1.38528 * 119.94845 * 359.97438 * 17 16 15 20 20 F 1.35098 * 120.02357 * 180.02562 * 19 17 16 21 21 C 1.38186 * 119.98166 * 84.41126 * 14 13 3 22 22 H 1.08998 * 109.46623 * 54.85215 * 1 2 3 23 23 H 1.08995 * 109.46979 * 174.85631 * 1 2 3 24 24 H 1.08995 * 109.46673 * 294.85814 * 1 2 3 25 25 H 1.09003 * 109.46728 * 239.99733 * 2 1 3 26 26 H 1.09004 * 109.46775 * 120.00487 * 2 1 3 27 27 H 1.09004 * 109.47007 * 186.04719 * 4 3 2 28 28 H 1.08994 * 109.47640 * 306.04516 * 4 3 2 29 29 H 0.96996 * 120.00190 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47244 * 79.76865 * 13 3 2 31 31 H 1.08997 * 109.47401 * 319.76558 * 13 3 2 32 32 H 1.08005 * 119.97607 * 359.97358 * 15 14 13 33 33 H 1.08005 * 119.99231 * 180.02562 * 16 15 14 34 34 H 1.08000 * 120.00381 * 0.04672 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4125 1.4508 -0.4626 5 6 3.4797 1.0468 -1.9129 6 1 2.5781 0.7686 -2.4382 7 6 4.6923 1.0325 -2.5690 8 7 4.7510 0.6795 -3.8344 9 14 6.2516 1.5144 -1.6604 10 1 6.8551 0.3083 -1.0388 11 1 7.2166 2.1138 -2.6168 12 1 5.9228 2.5042 -0.6032 13 6 1.8772 1.9937 1.3293 14 6 1.9166 3.4947 1.2013 15 6 3.1058 4.1735 1.3935 16 6 3.1439 5.5501 1.2760 17 6 1.9921 6.2503 0.9664 18 35 2.0458 8.1330 0.7979 19 6 0.8004 5.5708 0.7738 20 9 -0.3255 6.2532 0.4709 21 6 0.7644 4.1918 0.8914 22 1 -0.3632 0.5916 -0.8403 23 1 -0.3633 -1.0235 -0.0921 24 1 -0.3632 0.4320 0.9324 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.7844 2.4694 -0.3515 28 1 4.0253 0.7735 0.1321 29 1 5.6040 0.6697 -4.2962 30 1 2.6942 1.6621 1.9703 31 1 0.9260 1.6913 1.7673 32 1 4.0057 3.6275 1.6356 33 1 4.0735 6.0791 1.4259 34 1 -0.1642 3.6610 0.7418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267370782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:06 Heat of formation + Delta-G solvation = -31.438796 kcal Electronic energy + Delta-G solvation = -18417.798939 eV Core-core repulsion = 15310.673474 eV Total energy + Delta-G solvation = -3107.125465 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.033 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.03607 -40.49084 -38.33765 -34.75843 -33.84680 -31.96132 -31.67600 -31.04520 -28.93041 -26.14570 -24.20309 -23.71156 -22.72223 -21.32714 -19.02407 -18.29429 -17.67642 -17.06843 -16.82570 -16.64592 -16.05133 -15.95456 -15.21594 -14.99239 -14.56657 -14.42451 -14.19934 -13.88512 -13.67331 -13.21446 -13.06594 -12.74085 -12.68512 -12.52579 -12.24383 -11.95481 -11.90195 -11.75685 -11.49793 -11.37670 -11.31012 -10.76051 -9.95756 -9.65754 -9.00588 -8.25287 -6.27749 -0.14784 0.10887 0.44292 1.35211 1.37621 1.47497 2.34582 2.36388 3.03052 3.08774 3.35947 3.57596 3.77845 4.06811 4.19800 4.27156 4.37729 4.51527 4.54828 4.67231 4.76045 4.80633 4.91054 4.96952 5.02384 5.03174 5.11345 5.30931 5.44505 5.47254 5.59649 5.69411 6.02888 6.40342 6.67707 6.79363 7.35386 8.91486 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.004719 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.407480 B = 5932.116984 C = 7111.200803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.054 3.946 3 N -0.538 5.538 4 C 0.169 3.831 5 C -0.511 4.511 6 H 0.035 0.965 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.941 3.059 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.239 1.239 13 C 0.084 3.916 14 C -0.027 4.027 15 C -0.121 4.121 16 C -0.064 4.064 17 C -0.145 4.145 18 Br -0.032 7.032 19 C 0.109 3.891 20 F -0.133 7.133 21 C -0.128 4.128 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.036 0.964 28 H -0.011 1.011 29 H 0.265 0.735 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.146 0.854 33 H 0.161 0.839 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.621 11.304 16.199 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.074 4.074 3 N -0.262 5.262 4 C 0.042 3.958 5 C -0.550 4.550 6 H 0.054 0.946 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.162 1.162 13 C -0.043 4.043 14 C -0.029 4.029 15 C -0.140 4.140 16 C -0.083 4.083 17 C -0.225 4.225 18 Br 0.053 6.947 19 C 0.087 3.913 20 F -0.112 7.112 21 C -0.148 4.148 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.007 0.993 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.163 0.837 33 H 0.178 0.822 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.833 12.267 15.661 20.731 hybrid contribution 1.046 -0.687 -0.039 1.253 sum -4.787 11.580 15.622 20.026 Atomic orbital electron populations 1.21713 0.93704 1.01796 1.02001 1.22020 0.96657 0.88425 1.00263 1.61864 1.21901 1.18761 1.23714 1.20005 0.85986 0.96103 0.93661 1.21281 0.93804 1.44086 0.95818 0.94631 1.25849 1.02729 0.95030 0.95510 1.70056 1.26836 1.50526 1.11783 0.85810 0.78779 0.79763 0.79262 1.19304 1.21323 1.16174 1.21226 1.03360 0.89115 0.90592 1.19932 0.92372 0.96303 0.94244 1.21416 0.98445 0.93855 1.00331 1.21202 0.96957 0.94062 0.96079 1.22012 0.96064 0.92036 1.12391 1.96691 1.99107 1.01760 1.97166 1.17494 0.81771 0.90393 1.01605 1.91512 1.49331 1.79812 1.90528 1.21084 1.01116 0.90800 1.01787 0.93669 0.91403 0.91275 0.92967 0.94246 0.94585 0.99345 0.92650 0.92653 0.87628 0.83660 0.82159 0.82883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.96 71.98 0.72 -2.93 16 2 C 0.05 1.85 5.51 86.30 0.48 2.33 16 3 N -0.54 -19.94 4.34 -905.35 -3.93 -23.87 16 4 C 0.17 7.53 3.61 85.56 0.31 7.84 16 5 C -0.51 -28.70 8.79 25.60 0.22 -28.48 16 6 H 0.04 2.26 7.55 -2.91 -0.02 2.23 16 7 C 0.01 0.32 5.47 84.66 0.46 0.79 16 8 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 9 Si 0.94 42.51 27.47 68.60 1.88 44.39 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 13 C 0.08 2.32 4.94 85.56 0.42 2.74 16 14 C -0.03 -0.76 5.03 -19.87 -0.10 -0.86 16 15 C -0.12 -3.16 8.40 22.27 0.19 -2.98 16 16 C -0.06 -1.56 9.79 22.28 0.22 -1.34 16 17 C -0.14 -3.86 6.23 22.35 0.14 -3.72 16 18 Br -0.03 -0.78 33.28 -20.37 -0.68 -1.45 16 19 C 0.11 3.07 7.27 22.39 0.16 3.23 16 20 F -0.13 -3.85 16.73 44.97 0.75 -3.09 16 21 C -0.13 -3.49 9.70 22.31 0.22 -3.28 16 22 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 23 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.07 1.51 6.89 -2.39 -0.02 1.49 16 25 H 0.05 2.21 6.58 -2.39 -0.02 2.19 16 26 H 0.04 1.19 8.00 -2.38 -0.02 1.17 16 27 H 0.04 1.58 5.38 -2.38 -0.01 1.57 16 28 H -0.01 -0.48 7.55 -2.39 -0.02 -0.50 16 29 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.06 1.40 7.90 -2.38 -0.02 1.38 16 31 H 0.11 2.35 6.54 -2.39 -0.02 2.33 16 32 H 0.15 3.44 7.99 -2.91 -0.02 3.42 16 33 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 34 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -64.81 306.34 2.81 -62.01 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.05 Total: 7.54 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 3.44 Total: -26.66 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -3.63 Total: -82.73 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.75 Total: -3.09 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.88 Total: 44.39 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -0.68 Total: -1.45 kcal Total: -64.81 2.81 -62.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267370782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.569 kcal (2) G-P(sol) polarization free energy of solvation -64.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds