Wall clock time and date at job start Tue Mar 31 2020 10:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47080 * 20.80838 * 3 2 1 5 5 C 1.36940 * 120.00104 * 273.26105 * 4 3 2 6 6 H 1.07998 * 120.00205 * 186.69942 * 5 4 3 7 7 C 1.38813 * 119.99599 * 6.69060 * 5 4 3 8 8 N 1.31616 * 119.99978 * 25.19639 * 7 5 4 9 9 Si 1.86799 * 119.99861 * 205.19306 * 7 5 4 10 10 H 1.48495 * 109.46929 * 90.00188 * 9 7 5 11 11 H 1.48494 * 109.47045 * 210.00360 * 9 7 5 12 12 H 1.48504 * 109.47240 * 330.00067 * 9 7 5 13 13 S 1.65606 * 120.00297 * 93.25951 * 4 3 2 14 14 O 1.42094 * 106.40467 * 156.45764 * 13 4 3 15 15 O 1.42100 * 106.39761 * 23.53919 * 13 4 3 16 16 C 1.76203 * 107.21750 * 270.00079 * 13 4 3 17 17 C 1.38233 * 120.00198 * 89.99632 * 16 13 4 18 18 C 1.38232 * 120.00038 * 179.97438 * 17 16 13 19 19 C 1.38230 * 120.00013 * 0.02908 * 18 17 16 20 20 C 1.50707 * 119.99974 * 179.97438 * 19 18 17 21 21 F 1.39897 * 109.46941 * 209.99590 * 20 19 18 22 22 F 1.39896 * 109.47128 * 329.99631 * 20 19 18 23 23 C 1.38237 * 120.00189 * 0.24824 * 19 18 17 24 24 C 1.38230 * 120.00007 * 270.02012 * 16 13 4 25 25 H 4.40639 * 5.51331 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.47132 * 260.80667 * 3 2 1 27 27 H 1.09002 * 109.46798 * 140.80443 * 3 2 1 28 28 H 0.96998 * 120.00004 * 179.97438 * 8 7 5 29 29 H 1.08005 * 119.99926 * 0.02562 * 17 16 13 30 30 H 1.08001 * 119.99901 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.46642 * 89.99902 * 20 19 18 32 32 H 1.07997 * 120.00052 * 179.72996 * 23 19 18 33 33 H 1.08002 * 119.99574 * 0.02562 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2902 -0.4907 5 6 3.3000 -2.3352 0.3788 6 1 3.7611 -3.2514 0.0406 7 6 2.8749 -2.2168 1.6949 8 7 1.9116 -1.3741 2.0020 9 14 3.6698 -3.2536 3.0301 10 1 4.8296 -2.5221 3.6000 11 1 2.6791 -3.5235 4.1028 12 1 4.1325 -4.5394 2.4487 13 16 3.4879 -1.4858 -2.0968 14 8 4.4136 -2.5609 -2.1762 15 8 3.7580 -0.1882 -2.6091 16 6 2.0150 -2.0377 -2.8911 17 6 1.1233 -1.1177 -3.4100 18 6 -0.0319 -1.5507 -4.0335 19 6 -0.2957 -2.9036 -4.1377 20 6 -1.5554 -3.3757 -4.8170 21 9 -1.9635 -4.5886 -4.2518 22 9 -2.5628 -2.4199 -4.6476 23 6 0.5933 -3.8235 -3.6137 24 6 1.7511 -3.3906 -2.9948 25 1 -1.0498 -0.0004 0.0001 26 1 3.0093 0.1650 1.0144 27 1 3.0089 0.7973 -0.6495 28 1 1.6143 -1.2916 2.9216 29 1 1.3295 -0.0607 -3.3289 30 1 -0.7285 -0.8320 -4.4393 31 1 -1.3635 -3.5168 -5.8807 32 1 0.3851 -4.8804 -3.6912 33 1 2.4475 -4.1093 -2.5887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287535988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:00 Heat of formation + Delta-G solvation = -73.809665 kcal Electronic energy + Delta-G solvation = -24236.415057 eV Core-core repulsion = 20220.463340 eV Total energy + Delta-G solvation = -4015.951717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.03538 -47.05305 -38.76431 -36.42739 -35.96128 -34.53560 -32.14288 -31.85187 -31.22330 -30.69113 -26.68634 -26.18596 -23.94363 -22.49863 -21.68910 -18.66295 -18.17203 -17.71108 -17.53025 -17.16397 -17.02223 -16.61159 -16.10551 -15.00248 -14.68893 -14.49901 -14.23285 -13.82570 -13.63386 -13.54001 -13.38405 -13.16461 -13.00871 -12.84935 -12.53623 -12.22898 -11.94075 -11.36471 -11.10997 -11.08787 -10.98355 -10.86971 -10.78533 -10.54113 -10.38393 -10.01260 -9.68568 -9.32439 -9.03400 -8.81067 -8.68096 -8.41010 -6.71208 -4.06270 1.05772 1.61270 1.65203 3.03407 3.10339 3.14708 3.59776 3.68714 3.85065 3.92790 4.10716 4.15142 4.49826 4.57293 4.59508 4.85086 4.99933 5.10257 5.17826 5.49849 5.56575 5.68263 5.92046 5.99748 6.20328 6.29811 6.37654 6.50483 6.64349 6.69004 6.91618 7.06458 7.16012 7.17416 8.04904 8.44448 8.83999 8.87755 10.19576 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.005179 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.493068 B = 5405.125216 C = 5717.220962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.115 4.115 3 C 0.233 3.767 4 N -0.789 5.789 5 C -0.238 4.238 6 H 0.126 0.874 7 C 0.028 3.972 8 N -0.811 5.811 9 Si 0.934 3.066 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.262 1.262 13 S 2.518 3.482 14 O -0.981 6.981 15 O -0.996 6.996 16 C -0.636 4.636 17 C -0.029 4.029 18 C -0.113 4.113 19 C -0.148 4.148 20 C 0.313 3.687 21 F -0.200 7.200 22 F -0.200 7.200 23 C -0.114 4.114 24 C -0.028 4.028 25 H 0.195 0.805 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.278 0.722 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.576 -1.297 -5.982 7.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.118 4.118 3 C 0.108 3.892 4 N -0.610 5.610 5 C -0.387 4.387 6 H 0.143 0.857 7 C -0.186 4.186 8 N -0.449 5.449 9 Si 0.758 3.242 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.186 1.186 13 S 2.616 3.384 14 O -0.971 6.971 15 O -0.986 6.986 16 C -0.713 4.713 17 C -0.048 4.048 18 C -0.132 4.132 19 C -0.149 4.149 20 C 0.260 3.740 21 F -0.182 7.182 22 F -0.182 7.182 23 C -0.133 4.133 24 C -0.047 4.047 25 H 0.213 0.787 26 H 0.134 0.866 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.152 0.848 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.147 0.853 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.922 -1.026 -6.573 7.723 hybrid contribution -1.319 -0.830 0.639 1.684 sum -5.240 -1.856 -5.934 8.132 Atomic orbital electron populations 1.24205 0.95298 1.03041 1.05534 1.23352 0.94519 0.97711 0.96211 1.18537 0.83935 0.84792 1.01959 1.55607 1.71098 1.14816 1.19529 1.20259 1.30324 0.99087 0.89033 0.85702 1.25678 0.95116 0.98081 0.99694 1.70238 1.20782 1.33196 1.20717 0.85784 0.78992 0.80059 0.79319 1.19535 1.20654 1.18649 1.12391 0.78691 0.73138 0.74159 1.93352 1.62131 1.55232 1.86380 1.93343 1.85776 1.39506 1.79928 1.32786 1.26631 1.01108 1.10779 1.20815 0.91805 0.99495 0.92717 1.20930 0.97861 0.94119 1.00290 1.20447 0.96145 0.95551 1.02724 1.20336 0.82526 0.73047 0.98097 1.92987 1.91569 1.45771 1.87830 1.92985 1.63324 1.64779 1.97083 1.20971 0.94466 0.99151 0.98671 1.20867 0.95427 0.94673 0.93776 0.78736 0.86551 0.89904 0.91066 0.84772 0.85400 0.86251 0.85324 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.34 19.25 29.55 0.57 -4.78 16 2 C -0.12 -2.50 11.25 -37.12 -0.42 -2.92 16 3 C 0.23 5.00 5.45 -6.83 -0.04 4.97 16 4 N -0.79 -17.96 2.88 -62.78 -0.18 -18.14 16 5 C -0.24 -5.54 9.48 -15.06 -0.14 -5.68 16 6 H 0.13 2.87 7.22 -52.49 -0.38 2.49 16 7 C 0.03 0.62 4.92 -17.43 -0.09 0.54 16 8 N -0.81 -18.55 8.96 55.49 0.50 -18.05 16 9 Si 0.93 17.68 29.62 -169.99 -5.04 12.64 16 10 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 11 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 12 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 13 S 2.52 56.71 5.65 -107.50 -0.61 56.10 16 14 O -0.98 -23.92 16.06 -57.17 -0.92 -24.84 16 15 O -1.00 -23.46 15.85 -57.17 -0.91 -24.36 16 16 C -0.64 -13.03 5.97 -39.59 -0.24 -13.27 16 17 C -0.03 -0.55 9.52 -39.59 -0.38 -0.93 16 18 C -0.11 -1.85 9.40 -39.59 -0.37 -2.22 16 19 C -0.15 -2.30 5.74 -104.62 -0.60 -2.90 16 20 C 0.31 3.95 5.65 36.01 0.20 4.15 16 21 F -0.20 -2.78 16.47 2.25 0.04 -2.74 16 22 F -0.20 -2.76 16.48 2.25 0.04 -2.73 16 23 C -0.11 -1.87 9.40 -39.58 -0.37 -2.25 16 24 C -0.03 -0.54 9.52 -39.59 -0.38 -0.92 16 25 H 0.20 3.37 7.80 -54.10 -0.42 2.95 16 26 H 0.12 2.51 6.41 -51.93 -0.33 2.17 16 27 H 0.08 1.65 6.95 -51.93 -0.36 1.29 16 28 H 0.28 6.03 8.31 -40.82 -0.34 5.69 16 29 H 0.13 2.43 7.62 -52.48 -0.40 2.03 16 30 H 0.13 1.76 7.60 -52.49 -0.40 1.36 16 31 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.13 1.79 7.60 -52.49 -0.40 1.39 16 33 H 0.14 2.53 7.62 -52.49 -0.40 2.13 16 LS Contribution 314.14 15.07 4.73 4.73 Total: -1.00 -28.38 314.14 -7.24 -35.62 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -2.65 Total: 7.97 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -2.25 Total: -26.20 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.32 Total: -36.19 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -1.82 Total: -49.20 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.07 Total: -5.47 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.04 Total: 12.64 kcal Atomic # 16 Polarization: 56.71 SS G_CDS: -0.61 Total: 56.10 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.38 -7.24 -35.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287535988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.190 kcal (2) G-P(sol) polarization free energy of solvation -28.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds