Wall clock time and date at job start Tue Mar 31 2020 10:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47080 * 20.80838 * 3 2 1 5 5 C 1.36940 * 120.00104 * 273.26105 * 4 3 2 6 6 H 1.07998 * 120.00205 * 186.69942 * 5 4 3 7 7 C 1.38813 * 119.99599 * 6.69060 * 5 4 3 8 8 N 1.31616 * 119.99978 * 25.19639 * 7 5 4 9 9 Si 1.86799 * 119.99861 * 205.19306 * 7 5 4 10 10 H 1.48495 * 109.46929 * 90.00188 * 9 7 5 11 11 H 1.48494 * 109.47045 * 210.00360 * 9 7 5 12 12 H 1.48504 * 109.47240 * 330.00067 * 9 7 5 13 13 S 1.65606 * 120.00297 * 93.25951 * 4 3 2 14 14 O 1.42094 * 106.40467 * 156.45764 * 13 4 3 15 15 O 1.42100 * 106.39761 * 23.53919 * 13 4 3 16 16 C 1.76203 * 107.21750 * 270.00079 * 13 4 3 17 17 C 1.38233 * 120.00198 * 89.99632 * 16 13 4 18 18 C 1.38232 * 120.00038 * 179.97438 * 17 16 13 19 19 C 1.38230 * 120.00013 * 0.02908 * 18 17 16 20 20 C 1.50707 * 119.99974 * 179.97438 * 19 18 17 21 21 F 1.39897 * 109.46941 * 209.99590 * 20 19 18 22 22 F 1.39896 * 109.47128 * 329.99631 * 20 19 18 23 23 C 1.38237 * 120.00189 * 0.24824 * 19 18 17 24 24 C 1.38230 * 120.00007 * 270.02012 * 16 13 4 25 25 H 4.40639 * 5.51331 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.47132 * 260.80667 * 3 2 1 27 27 H 1.09002 * 109.46798 * 140.80443 * 3 2 1 28 28 H 0.96998 * 120.00004 * 179.97438 * 8 7 5 29 29 H 1.08005 * 119.99926 * 0.02562 * 17 16 13 30 30 H 1.08001 * 119.99901 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.46642 * 89.99902 * 20 19 18 32 32 H 1.07997 * 120.00052 * 179.72996 * 23 19 18 33 33 H 1.08002 * 119.99574 * 0.02562 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2902 -0.4907 5 6 3.3000 -2.3352 0.3788 6 1 3.7611 -3.2514 0.0406 7 6 2.8749 -2.2168 1.6949 8 7 1.9116 -1.3741 2.0020 9 14 3.6698 -3.2536 3.0301 10 1 4.8296 -2.5221 3.6000 11 1 2.6791 -3.5235 4.1028 12 1 4.1325 -4.5394 2.4487 13 16 3.4879 -1.4858 -2.0968 14 8 4.4136 -2.5609 -2.1762 15 8 3.7580 -0.1882 -2.6091 16 6 2.0150 -2.0377 -2.8911 17 6 1.1233 -1.1177 -3.4100 18 6 -0.0319 -1.5507 -4.0335 19 6 -0.2957 -2.9036 -4.1377 20 6 -1.5554 -3.3757 -4.8170 21 9 -1.9635 -4.5886 -4.2518 22 9 -2.5628 -2.4199 -4.6476 23 6 0.5933 -3.8235 -3.6137 24 6 1.7511 -3.3906 -2.9948 25 1 -1.0498 -0.0004 0.0001 26 1 3.0093 0.1650 1.0144 27 1 3.0089 0.7973 -0.6495 28 1 1.6143 -1.2916 2.9216 29 1 1.3295 -0.0607 -3.3289 30 1 -0.7285 -0.8320 -4.4393 31 1 -1.3635 -3.5168 -5.8807 32 1 0.3851 -4.8804 -3.6912 33 1 2.4475 -4.1093 -2.5887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287535988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:59 Heat of formation + Delta-G solvation = -89.861871 kcal Electronic energy + Delta-G solvation = -24237.111133 eV Core-core repulsion = 20220.463340 eV Total energy + Delta-G solvation = -4016.647793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.05256 -48.07617 -40.13522 -38.11849 -37.84769 -36.44572 -33.80269 -33.20106 -32.89810 -32.07047 -28.36752 -27.36972 -25.66639 -23.87756 -23.00959 -20.38350 -19.80127 -19.17005 -18.64473 -18.46634 -18.26726 -18.20310 -17.70559 -16.63854 -16.28819 -15.84027 -15.75843 -15.20698 -15.11311 -14.90357 -14.63822 -14.56145 -14.32792 -14.24171 -14.06550 -13.58202 -13.50491 -13.12727 -12.77331 -12.69088 -12.62397 -12.31086 -12.29296 -12.27263 -11.99675 -11.65941 -11.31127 -10.97391 -10.62143 -10.30013 -10.10155 -10.05643 -8.37148 -5.83147 -0.39577 -0.09074 0.26647 1.50574 1.56237 1.64539 2.00046 2.33422 2.34886 2.45938 2.68431 2.80702 2.90722 3.16513 3.23450 3.44029 3.65674 3.86710 3.93441 3.98330 4.05764 4.29022 4.48220 4.55305 4.64430 4.91733 4.95316 4.99610 5.15898 5.20040 5.25795 5.41680 5.51219 5.78569 6.32982 6.74755 7.15426 7.22141 8.54300 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.005179 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.493068 B = 5405.125216 C = 5717.220962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.144 4.144 3 C 0.234 3.766 4 N -0.804 5.804 5 C -0.276 4.276 6 H 0.116 0.884 7 C 0.002 3.998 8 N -0.835 5.835 9 Si 0.989 3.011 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.263 1.263 13 S 2.546 3.454 14 O -1.005 7.005 15 O -1.011 7.011 16 C -0.662 4.662 17 C -0.043 4.043 18 C -0.110 4.110 19 C -0.140 4.140 20 C 0.317 3.683 21 F -0.207 7.207 22 F -0.206 7.206 23 C -0.112 4.112 24 C -0.046 4.046 25 H 0.224 0.776 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.279 0.721 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.172 0.828 32 H 0.156 0.844 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 -1.958 -7.199 9.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.147 4.147 3 C 0.109 3.891 4 N -0.626 5.626 5 C -0.422 4.422 6 H 0.134 0.866 7 C -0.209 4.209 8 N -0.472 5.472 9 Si 0.811 3.189 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.187 1.187 13 S 2.647 3.353 14 O -0.995 6.995 15 O -1.001 7.001 16 C -0.743 4.743 17 C -0.062 4.062 18 C -0.129 4.129 19 C -0.141 4.141 20 C 0.264 3.736 21 F -0.188 7.188 22 F -0.187 7.187 23 C -0.131 4.131 24 C -0.065 4.065 25 H 0.241 0.759 26 H 0.128 0.872 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.175 0.825 31 H 0.188 0.812 32 H 0.174 0.826 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.779 -1.679 -7.734 9.800 hybrid contribution -0.833 -0.614 0.787 1.300 sum -6.612 -2.293 -6.948 9.861 Atomic orbital electron populations 1.24908 0.96108 1.01825 1.04353 1.23549 0.94992 0.98828 0.97321 1.18485 0.84408 0.84435 1.01754 1.55188 1.72715 1.15308 1.19402 1.20241 1.32803 0.99080 0.90071 0.86606 1.26257 0.95101 0.98951 1.00574 1.70303 1.21554 1.34466 1.20923 0.84978 0.78168 0.78699 0.77010 1.19204 1.20426 1.18729 1.10511 0.78390 0.72394 0.73971 1.93322 1.63318 1.55989 1.86864 1.93322 1.86270 1.40212 1.80267 1.32270 1.26172 1.02411 1.13464 1.20941 0.92662 0.99245 0.93334 1.21232 0.97157 0.95301 0.99161 1.20889 0.97095 0.95106 1.01045 1.20678 0.80636 0.72328 0.99972 1.92982 1.91493 1.46106 1.88222 1.92981 1.63408 1.65085 1.97228 1.21252 0.93409 1.00902 0.97504 1.20995 0.96800 0.94022 0.94719 0.75937 0.87178 0.89223 0.91012 0.84846 0.82486 0.81153 0.82608 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.10 19.25 74.32 1.43 -8.66 16 2 C -0.14 -6.29 11.25 31.13 0.35 -5.94 16 3 C 0.23 10.33 5.45 84.57 0.46 10.80 16 4 N -0.80 -37.66 2.88 -352.52 -1.02 -38.67 16 5 C -0.28 -13.25 9.48 84.03 0.80 -12.45 16 6 H 0.12 5.58 7.22 -2.91 -0.02 5.56 16 7 C 0.00 0.09 4.92 84.86 0.42 0.51 16 8 N -0.83 -38.72 8.96 21.65 0.19 -38.53 16 9 Si 0.99 36.66 29.62 68.60 2.03 38.69 16 10 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 11 H -0.28 -10.14 7.11 99.48 0.71 -9.44 16 12 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 13 S 2.55 117.28 5.65 -56.49 -0.32 116.96 16 14 O -1.00 -50.36 16.06 -128.00 -2.06 -52.42 16 15 O -1.01 -48.41 15.85 -128.00 -2.03 -50.44 16 16 C -0.66 -27.05 5.97 22.27 0.13 -26.91 16 17 C -0.04 -1.55 9.52 22.27 0.21 -1.34 16 18 C -0.11 -3.27 9.40 22.27 0.21 -3.06 16 19 C -0.14 -3.88 5.74 -19.86 -0.11 -3.99 16 20 C 0.32 6.51 5.65 71.24 0.40 6.92 16 21 F -0.21 -4.91 16.47 44.97 0.74 -4.17 16 22 F -0.21 -4.80 16.48 44.97 0.74 -4.06 16 23 C -0.11 -3.41 9.40 22.27 0.21 -3.20 16 24 C -0.05 -1.73 9.52 22.27 0.21 -1.52 16 25 H 0.22 7.21 7.80 -4.43 -0.03 7.17 16 26 H 0.11 4.93 6.41 -2.39 -0.02 4.91 16 27 H 0.09 3.69 6.95 -2.39 -0.02 3.68 16 28 H 0.28 12.23 8.31 -92.71 -0.77 11.46 16 29 H 0.13 4.78 7.62 -2.91 -0.02 4.75 16 30 H 0.16 3.71 7.60 -2.91 -0.02 3.69 16 31 H 0.17 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.16 3.82 7.60 -2.91 -0.02 3.80 16 33 H 0.13 4.99 7.62 -2.91 -0.02 4.96 16 Total: -1.00 -61.12 314.14 4.16 -56.95 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 1.15 Total: 24.54 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 4.72 Total: -48.87 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -0.82 Total: -77.20 kcal Atomic # 8 Polarization: -98.77 SS G_CDS: -4.08 Total: -102.86 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 1.48 Total: -8.23 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Atomic # 16 Polarization: 117.28 SS G_CDS: -0.32 Total: 116.96 kcal Total: -61.12 4.16 -56.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287535988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.908 kcal (2) G-P(sol) polarization free energy of solvation -61.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds