Wall clock time and date at job start Tue Mar 31 2020 11:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86792 * 120.00095 * 2 1 4 4 H 1.48499 * 109.47123 * 270.00259 * 3 2 1 5 5 H 1.48501 * 109.47219 * 30.00318 * 3 2 1 6 6 H 1.48501 * 109.47131 * 150.00285 * 3 2 1 7 7 C 1.38803 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00115 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99953 * 179.97438 * 7 2 1 10 10 C 1.80994 * 100.00133 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47400 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00006 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00026 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.65148 * 0.04879 * 13 11 10 15 15 C 1.54909 * 104.83287 * 204.08995 * 14 13 11 16 16 C 1.55158 * 101.57933 * 322.98745 * 15 14 13 17 17 H 1.09001 * 110.87370 * 277.06573 * 16 15 14 18 18 N 1.46500 * 110.71725 * 153.86682 * 16 15 14 19 19 C 1.35051 * 126.04031 * 280.02726 * 18 16 15 20 20 C 1.35373 * 107.73214 * 179.97438 * 19 18 16 21 21 Cl 1.73599 * 126.04415 * 179.97438 * 20 19 18 22 22 C 1.39929 * 107.90416 * 0.22600 * 20 19 18 23 23 N 1.30848 * 108.21571 * 359.61656 * 22 20 19 24 24 C 1.47026 * 125.64975 * 180.02562 * 13 11 10 25 25 H 0.96999 * 119.99814 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.47344 * 59.99956 * 10 9 7 27 27 H 1.09003 * 109.47734 * 300.00323 * 10 9 7 28 28 H 1.09000 * 110.36727 * 322.92816 * 14 13 11 29 29 H 1.09006 * 110.36842 * 85.24674 * 14 13 11 30 30 H 1.09002 * 111.00012 * 204.91956 * 15 14 13 31 31 H 1.08990 * 111.00584 * 81.06511 * 15 14 13 32 32 H 1.08005 * 126.12881 * 359.92207 * 19 18 16 33 33 H 1.08007 * 125.88814 * 179.76724 * 22 20 19 34 34 H 1.08997 * 109.87928 * 59.55887 * 24 13 11 35 35 H 1.09007 * 109.88135 * 298.39809 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2022 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5730 -3.2327 -0.0021 12 8 6.3440 -2.2965 -0.0025 13 7 6.0455 -4.4949 -0.0016 14 6 5.2249 -5.7196 -0.0010 15 6 6.1399 -6.8097 0.6107 16 6 7.5228 -6.4203 0.0247 17 1 7.6444 -6.8196 -0.9822 18 7 8.6045 -6.8829 0.8977 19 6 9.0282 -6.2764 2.0275 20 6 10.0402 -7.0165 2.5382 21 17 10.9310 -6.6674 3.9867 22 6 10.2449 -8.1095 1.6888 23 7 9.3816 -8.0330 0.7085 24 6 7.4648 -4.8785 -0.0020 25 1 -0.4850 0.8401 0.0004 26 1 3.6432 -3.4319 -0.8907 27 1 3.6439 -3.4316 0.8893 28 1 4.3365 -5.5807 0.6151 29 1 4.9433 -5.9881 -1.0192 30 1 5.8402 -7.8034 0.2774 31 1 6.1457 -6.7495 1.6989 32 1 8.6314 -5.3640 2.4477 33 1 10.9859 -8.8840 1.8210 34 1 7.9586 -4.4733 0.8812 35 1 7.9495 -4.5051 -0.9042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290965154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:37 Heat of formation + Delta-G solvation = 48.222551 kcal Electronic energy + Delta-G solvation = -20732.475168 eV Core-core repulsion = 17305.904596 eV Total energy + Delta-G solvation = -3426.570571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.85728 -39.97835 -37.61672 -36.69651 -33.57897 -32.49667 -30.97320 -30.21049 -29.99818 -27.98070 -25.68144 -24.11794 -22.85496 -21.69663 -20.61233 -19.66697 -18.19696 -17.75657 -16.82612 -16.39563 -15.53838 -15.40830 -15.10790 -14.93599 -14.74497 -14.29882 -14.09673 -13.90714 -13.48972 -13.20214 -12.88929 -12.73384 -12.64400 -12.27985 -12.09309 -11.88646 -11.76693 -11.47354 -11.32117 -11.05758 -10.89014 -10.69475 -9.98213 -9.92594 -9.72322 -9.06076 -8.87764 -8.83076 -8.58125 -7.00009 -6.34514 -4.07413 1.27409 1.46988 2.17419 2.25358 2.60058 2.75157 3.07038 3.28899 3.45756 3.50868 3.69894 3.89574 4.23465 4.27662 4.35156 4.41680 4.54908 4.57449 4.75073 4.99373 5.04496 5.04801 5.15009 5.22229 5.26808 5.29158 5.37777 5.52510 5.66090 5.88816 5.91017 6.00129 6.37352 7.09116 7.28242 7.88365 8.21739 8.35537 9.11397 10.74610 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.002570 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.472021 B =10891.095776 C =11468.695734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.140 6.140 10 C -0.118 4.118 11 C 0.550 3.450 12 O -0.511 6.511 13 N -0.625 5.625 14 C 0.100 3.900 15 C -0.142 4.142 16 C 0.151 3.849 17 H 0.126 0.874 18 N -0.355 5.355 19 C 0.077 3.923 20 C -0.188 4.188 21 Cl -0.042 7.042 22 C 0.065 3.935 23 N -0.278 5.278 24 C 0.101 3.899 25 H 0.271 0.729 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.184 0.816 33 H 0.193 0.807 34 H 0.078 0.922 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.648 -18.415 3.136 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.268 4.268 11 C 0.338 3.662 12 O -0.385 6.385 13 N -0.363 5.363 14 C -0.023 4.023 15 C -0.181 4.181 16 C 0.049 3.951 17 H 0.144 0.856 18 N -0.136 5.136 19 C -0.070 4.070 20 C -0.226 4.226 21 Cl -0.013 7.013 22 C -0.122 4.122 23 N -0.099 5.099 24 C -0.024 4.024 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.201 0.799 33 H 0.209 0.791 34 H 0.096 0.904 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.112 -17.284 2.082 25.123 hybrid contribution -0.435 0.032 0.893 0.994 sum 17.678 -17.252 2.976 24.880 Atomic orbital electron populations 1.69934 1.05908 1.27848 1.47837 1.24711 0.94459 0.98984 0.93120 0.86740 0.81886 0.83283 0.79978 1.19168 1.19871 1.15924 1.22283 0.88060 0.97566 1.59057 0.89325 1.84833 1.09541 0.99608 1.97437 1.23258 0.93080 1.04614 1.05874 1.20077 0.90768 0.80221 0.75097 1.90733 1.58822 1.41075 1.47838 1.48385 1.05824 1.05801 1.76330 1.22377 0.94982 0.82985 1.01954 1.23298 0.92580 1.00112 1.02104 1.22380 0.84031 0.94272 0.94437 0.85574 1.48405 1.27513 1.18856 1.18873 1.22262 0.96267 0.99481 0.89022 1.20760 1.03554 1.01606 0.96723 1.98340 1.73936 1.94809 1.34261 1.23912 0.98534 0.98201 0.91527 1.77507 1.06725 1.02848 1.22787 1.22095 0.84707 0.91499 1.04069 0.91867 0.88328 0.88339 0.89031 0.90224 0.88340 0.89483 0.79917 0.79061 0.90377 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.03 13.97 55.49 0.78 -25.26 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.36 27.74 -169.99 -4.71 16.64 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 7 C -0.52 -14.62 10.04 30.94 0.31 -14.31 16 8 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 9 S -0.14 -3.45 18.55 -107.50 -1.99 -5.44 16 10 C -0.12 -2.15 5.16 36.01 0.19 -1.96 16 11 C 0.55 9.22 7.87 -10.99 -0.09 9.14 16 12 O -0.51 -10.56 16.19 5.55 0.09 -10.47 16 13 N -0.62 -7.35 3.33 -170.52 -0.57 -7.91 16 14 C 0.10 0.81 6.69 -2.53 -0.02 0.79 16 15 C -0.14 -0.92 6.77 -24.58 -0.17 -1.09 16 16 C 0.15 1.14 4.06 -66.10 -0.27 0.87 16 17 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 18 N -0.35 -3.15 3.63 -53.05 -0.19 -3.34 16 19 C 0.08 0.68 10.40 -17.16 -0.18 0.50 16 20 C -0.19 -1.67 6.65 -39.97 -0.27 -1.94 16 21 Cl -0.04 -0.36 29.30 -51.86 -1.52 -1.88 16 22 C 0.07 0.55 12.02 -17.34 -0.21 0.34 16 23 N -0.28 -2.74 12.57 30.64 0.39 -2.36 16 24 C 0.10 0.98 6.48 -3.07 -0.02 0.96 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 27 H 0.10 1.66 7.85 -51.91 -0.41 1.25 16 28 H 0.09 0.73 7.48 -51.93 -0.39 0.34 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.18 1.38 7.01 -52.48 -0.37 1.01 16 33 H 0.19 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.08 0.79 6.00 -51.93 -0.31 0.48 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -33.86 329.46 -7.59 -41.45 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -4.01 Total: -2.36 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.81 Total: -4.04 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.40 Total: -38.87 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.44 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.52 Total: -1.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.86 -7.59 -41.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290965154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.676 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds