Wall clock time and date at job start Tue Mar 31 2020 11:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86792 * 120.00095 * 2 1 4 4 H 1.48499 * 109.47123 * 270.00259 * 3 2 1 5 5 H 1.48501 * 109.47219 * 30.00318 * 3 2 1 6 6 H 1.48501 * 109.47131 * 150.00285 * 3 2 1 7 7 C 1.38803 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00115 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99953 * 179.97438 * 7 2 1 10 10 C 1.80994 * 100.00133 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47400 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00006 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00026 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.65148 * 0.04879 * 13 11 10 15 15 C 1.54909 * 104.83287 * 204.08995 * 14 13 11 16 16 C 1.55158 * 101.57933 * 322.98745 * 15 14 13 17 17 H 1.09001 * 110.87370 * 277.06573 * 16 15 14 18 18 N 1.46500 * 110.71725 * 153.86682 * 16 15 14 19 19 C 1.35051 * 126.04031 * 280.02726 * 18 16 15 20 20 C 1.35373 * 107.73214 * 179.97438 * 19 18 16 21 21 Cl 1.73599 * 126.04415 * 179.97438 * 20 19 18 22 22 C 1.39929 * 107.90416 * 0.22600 * 20 19 18 23 23 N 1.30848 * 108.21571 * 359.61656 * 22 20 19 24 24 C 1.47026 * 125.64975 * 180.02562 * 13 11 10 25 25 H 0.96999 * 119.99814 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.47344 * 59.99956 * 10 9 7 27 27 H 1.09003 * 109.47734 * 300.00323 * 10 9 7 28 28 H 1.09000 * 110.36727 * 322.92816 * 14 13 11 29 29 H 1.09006 * 110.36842 * 85.24674 * 14 13 11 30 30 H 1.09002 * 111.00012 * 204.91956 * 15 14 13 31 31 H 1.08990 * 111.00584 * 81.06511 * 15 14 13 32 32 H 1.08005 * 126.12881 * 359.92207 * 19 18 16 33 33 H 1.08007 * 125.88814 * 179.76724 * 22 20 19 34 34 H 1.08997 * 109.87928 * 59.55887 * 24 13 11 35 35 H 1.09007 * 109.88135 * 298.39809 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2022 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5730 -3.2327 -0.0021 12 8 6.3440 -2.2965 -0.0025 13 7 6.0455 -4.4949 -0.0016 14 6 5.2249 -5.7196 -0.0010 15 6 6.1399 -6.8097 0.6107 16 6 7.5228 -6.4203 0.0247 17 1 7.6444 -6.8196 -0.9822 18 7 8.6045 -6.8829 0.8977 19 6 9.0282 -6.2764 2.0275 20 6 10.0402 -7.0165 2.5382 21 17 10.9310 -6.6674 3.9867 22 6 10.2449 -8.1095 1.6888 23 7 9.3816 -8.0330 0.7085 24 6 7.4648 -4.8785 -0.0020 25 1 -0.4850 0.8401 0.0004 26 1 3.6432 -3.4319 -0.8907 27 1 3.6439 -3.4316 0.8893 28 1 4.3365 -5.5807 0.6151 29 1 4.9433 -5.9881 -1.0192 30 1 5.8402 -7.8034 0.2774 31 1 6.1457 -6.7495 1.6989 32 1 8.6314 -5.3640 2.4477 33 1 10.9859 -8.8840 1.8210 34 1 7.9586 -4.4733 0.8812 35 1 7.9495 -4.5051 -0.9042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290965154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:37 Heat of formation + Delta-G solvation = 26.122987 kcal Electronic energy + Delta-G solvation = -20733.433477 eV Core-core repulsion = 17305.904596 eV Total energy + Delta-G solvation = -3427.528880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.055 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.52610 -41.03313 -38.66400 -37.37014 -34.67937 -34.44174 -31.81835 -31.21968 -30.77897 -28.91743 -27.84273 -25.00002 -23.52885 -22.34622 -21.36738 -20.76181 -19.70821 -18.82100 -18.06285 -17.35325 -17.11225 -16.60037 -16.19424 -15.94561 -15.73665 -15.45005 -15.13944 -14.91675 -14.79804 -14.26651 -14.09191 -13.77796 -13.39158 -13.35289 -13.27724 -13.02073 -12.94158 -12.69250 -12.53130 -12.42956 -12.06177 -11.87674 -11.55292 -11.17549 -11.12744 -10.63609 -10.54153 -9.87572 -9.49589 -9.01433 -8.51972 -6.23086 0.60563 0.77371 0.98239 1.31131 1.42009 1.44177 1.50230 1.53124 1.68246 2.03821 2.24286 2.66014 2.86538 3.00550 3.26984 3.60839 3.63673 3.75855 3.84747 3.93713 4.11902 4.18218 4.37745 4.39907 4.46202 4.56614 4.60037 4.66459 4.80868 4.96846 5.11383 5.31236 5.70495 5.72933 6.11463 6.18028 6.43839 6.93291 6.95898 8.60230 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.002570 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.472021 B =10891.095776 C =11468.695734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.526 4.526 8 H 0.065 0.935 9 S -0.177 6.177 10 C -0.102 4.102 11 C 0.552 3.448 12 O -0.559 6.559 13 N -0.613 5.613 14 C 0.093 3.907 15 C -0.129 4.129 16 C 0.159 3.841 17 H 0.142 0.858 18 N -0.357 5.357 19 C 0.072 3.928 20 C -0.198 4.198 21 Cl -0.042 7.042 22 C 0.067 3.933 23 N -0.298 5.298 24 C 0.099 3.901 25 H 0.277 0.723 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.191 0.809 33 H 0.216 0.784 34 H 0.074 0.926 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.735 -19.971 3.054 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.160 1.160 7 C -0.674 4.674 8 H 0.083 0.917 9 S 0.049 5.951 10 C -0.253 4.253 11 C 0.340 3.660 12 O -0.437 6.437 13 N -0.349 5.349 14 C -0.029 4.029 15 C -0.168 4.168 16 C 0.057 3.943 17 H 0.160 0.840 18 N -0.139 5.139 19 C -0.076 4.076 20 C -0.236 4.236 21 Cl -0.014 7.014 22 C -0.120 4.120 23 N -0.118 5.118 24 C -0.025 4.025 25 H 0.086 0.914 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.101 0.899 32 H 0.208 0.792 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.195 -18.904 2.000 27.015 hybrid contribution -0.715 0.316 0.933 1.217 sum 18.480 -18.588 2.933 26.375 Atomic orbital electron populations 1.70011 1.07261 1.29011 1.49127 1.25540 0.95249 1.02197 0.92962 0.85894 0.80712 0.79761 0.80187 1.18751 1.18459 1.16047 1.22429 0.90034 0.96721 1.58188 0.91688 1.84773 1.06677 1.06020 1.97589 1.23204 0.94968 0.99606 1.07510 1.19670 0.89606 0.81383 0.75312 1.90715 1.59404 1.42981 1.50605 1.48221 1.07558 1.05296 1.73844 1.22722 0.94992 0.81558 1.03644 1.23258 0.91210 1.00537 1.01755 1.22378 0.84348 0.92352 0.95217 0.84035 1.48476 1.27718 1.18794 1.18917 1.22464 0.96327 0.99713 0.89087 1.20901 1.03795 1.01990 0.96944 1.98340 1.73942 1.94830 1.34284 1.24338 0.98443 0.98432 0.90797 1.77480 1.07409 1.03427 1.23524 1.22187 0.83130 0.93354 1.03817 0.91372 0.86656 0.86706 0.88569 0.88053 0.86016 0.89853 0.79222 0.76740 0.90819 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.83 13.97 21.65 0.30 -54.52 16 2 C 0.05 2.65 5.50 84.86 0.47 3.12 16 3 Si 0.91 44.21 27.74 68.60 1.90 46.11 16 4 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.24 -11.43 6.74 99.48 0.67 -10.76 16 7 C -0.53 -29.74 10.04 67.96 0.68 -29.06 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 9 S -0.18 -8.67 18.55 -56.49 -1.05 -9.72 16 10 C -0.10 -3.61 5.16 71.24 0.37 -3.24 16 11 C 0.55 17.89 7.87 87.66 0.69 18.58 16 12 O -0.56 -23.00 16.19 -3.04 -0.05 -23.05 16 13 N -0.61 -13.18 3.33 -811.79 -2.70 -15.88 16 14 C 0.09 1.20 6.69 86.85 0.58 1.78 16 15 C -0.13 -1.25 6.77 31.99 0.22 -1.03 16 16 C 0.16 1.97 4.06 46.18 0.19 2.15 16 17 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 18 N -0.36 -5.59 3.63 -321.74 -1.17 -6.75 16 19 C 0.07 1.15 10.40 83.54 0.87 2.01 16 20 C -0.20 -3.22 6.65 22.02 0.15 -3.07 16 21 Cl -0.04 -0.67 29.30 -2.72 -0.08 -0.75 16 22 C 0.07 1.00 12.02 85.25 1.02 2.02 16 23 N -0.30 -5.22 12.57 -56.97 -0.72 -5.94 16 24 C 0.10 1.76 6.48 86.72 0.56 2.32 16 25 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 26 H 0.12 3.69 8.14 -2.39 -0.02 3.68 16 27 H 0.11 3.68 7.85 -2.39 -0.02 3.67 16 28 H 0.10 1.22 7.48 -2.39 -0.02 1.21 16 29 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.19 2.63 7.01 -2.91 -0.02 2.61 16 33 H 0.22 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.07 1.41 6.00 -2.39 -0.01 1.39 16 35 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -73.63 329.46 3.32 -70.31 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 1.08 Total: 4.61 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.79 Total: -4.42 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -4.28 Total: -83.10 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.05 Total: -23.05 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.90 Total: 46.11 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.05 Total: -9.72 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Total: -73.63 3.32 -70.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290965154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.433 kcal (2) G-P(sol) polarization free energy of solvation -73.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds