Wall clock time and date at job start Tue Mar 31 2020 11:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.47419 * 125.65408 * 359.69019 * 13 11 10 15 15 C 1.55129 * 104.72783 * 155.81707 * 14 13 11 16 16 C 1.55161 * 101.48250 * 37.29418 * 15 14 13 17 17 H 1.08999 * 110.71480 * 82.69527 * 16 15 14 18 18 N 1.46496 * 110.72083 * 205.96966 * 16 15 14 19 19 C 1.35047 * 126.03822 * 79.98118 * 18 16 15 20 20 C 1.35368 * 107.72962 * 179.97438 * 19 18 16 21 21 Cl 1.73600 * 126.04623 * 179.97438 * 20 19 18 22 22 C 1.39928 * 107.90764 * 359.97438 * 20 19 18 23 23 N 1.30851 * 108.21519 * 359.76244 * 22 20 19 24 24 C 1.47018 * 125.64456 * 180.02562 * 13 11 10 25 25 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 27 27 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 28 28 H 1.09002 * 110.36673 * 274.75130 * 14 13 11 29 29 H 1.09008 * 110.36715 * 37.06969 * 14 13 11 30 30 H 1.09005 * 111.19363 * 279.19700 * 15 14 13 31 31 H 1.08992 * 110.94134 * 155.28757 * 15 14 13 32 32 H 1.07998 * 126.13190 * 359.94025 * 19 18 16 33 33 H 1.08006 * 125.89148 * 180.02562 * 22 20 19 34 34 H 1.09001 * 109.88070 * 300.43813 * 24 13 11 35 35 H 1.08996 * 109.88909 * 61.60396 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 4.3150 -6.2449 -0.0051 15 6 4.8018 -7.5823 0.6122 16 6 3.7728 -8.5853 0.0269 17 1 4.0591 -8.8877 -0.9804 18 7 3.6329 -9.7532 0.9002 19 6 2.8960 -9.8166 2.0301 20 6 3.0302 -11.0632 2.5404 21 17 2.2835 -11.6597 3.9896 22 6 3.8773 -11.7860 1.6930 23 7 4.2345 -11.0034 0.7071 24 6 2.4665 -7.7640 -0.0008 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7314 -0.8895 27 1 3.1245 -3.7314 0.8906 28 1 4.6844 -6.1385 -1.0251 29 1 4.6414 -5.4041 0.6070 30 1 4.7471 -7.5570 1.7006 31 1 5.8121 -7.8201 0.2793 32 1 2.3061 -9.0160 2.4514 33 1 4.1803 -12.8140 1.8272 34 1 1.8685 -7.9893 0.8823 35 1 1.9012 -7.9968 -0.9031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290965157.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:40 Heat of formation + Delta-G solvation = 47.946138 kcal Electronic energy + Delta-G solvation = -20686.627317 eV Core-core repulsion = 17260.044759 eV Total energy + Delta-G solvation = -3426.582558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82014 -39.88333 -37.51913 -36.66306 -33.51164 -32.48516 -30.91083 -30.14456 -29.90084 -27.89485 -25.55529 -24.03115 -22.81077 -21.66295 -20.56094 -19.57051 -18.15298 -17.73542 -16.71808 -16.32996 -15.49390 -15.31635 -14.99931 -14.85429 -14.69457 -14.20527 -14.06516 -13.95274 -13.45619 -13.12512 -12.67633 -12.62762 -12.59259 -12.23143 -11.96723 -11.84509 -11.73623 -11.42207 -11.11113 -11.07876 -10.86148 -10.81504 -9.94526 -9.88501 -9.61057 -9.12121 -8.80824 -8.77856 -8.31699 -6.57823 -6.27276 -3.98937 1.30855 1.50737 2.20464 2.30753 2.78161 2.88032 3.18586 3.20749 3.26339 3.48581 3.75258 3.93909 4.14605 4.27413 4.39409 4.45924 4.59199 4.78989 4.86165 5.07153 5.08095 5.18201 5.25787 5.30294 5.32346 5.40248 5.52230 5.58397 5.78293 5.94202 6.01635 6.09874 6.41202 7.12373 7.38808 7.54058 8.29357 8.35101 9.18061 10.80139 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.002442 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.999481 B =11463.072928 C =11883.371329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.147 4.147 11 C 0.551 3.449 12 O -0.509 6.509 13 N -0.626 5.626 14 C 0.102 3.898 15 C -0.142 4.142 16 C 0.151 3.849 17 H 0.126 0.874 18 N -0.354 5.354 19 C 0.078 3.922 20 C -0.188 4.188 21 Cl -0.042 7.042 22 C 0.065 3.935 23 N -0.279 5.279 24 C 0.101 3.899 25 H 0.269 0.731 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.184 0.816 33 H 0.192 0.808 34 H 0.078 0.922 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.453 -21.379 3.054 24.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.197 1.197 6 H -0.207 1.207 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.340 3.660 12 O -0.382 6.382 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.181 4.181 16 C 0.048 3.952 17 H 0.144 0.856 18 N -0.136 5.136 19 C -0.070 4.070 20 C -0.227 4.227 21 Cl -0.014 7.014 22 C -0.122 4.122 23 N -0.099 5.099 24 C -0.024 4.024 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.201 0.799 33 H 0.209 0.791 34 H 0.096 0.904 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.060 -21.315 1.991 23.654 hybrid contribution 1.444 1.105 0.929 2.042 sum 11.505 -20.211 2.921 23.438 Atomic orbital electron populations 1.70015 1.05970 1.27558 1.46661 1.25002 0.95040 0.99073 0.94450 0.86154 0.79397 0.81490 0.78387 1.20231 1.19675 1.20715 1.22840 0.94880 0.91493 1.59214 0.90871 1.85444 1.04680 0.96404 1.96738 1.23514 1.06715 0.94508 1.04987 1.20122 0.85597 0.85333 0.74980 1.90733 1.14885 1.84977 1.47589 1.48442 1.06834 1.04670 1.76603 1.22381 0.80181 0.97869 1.01728 1.23335 0.99307 0.93387 1.02056 1.22381 0.96658 0.81714 0.94409 0.85626 1.48403 1.36473 1.09931 1.18789 1.22267 0.97179 0.98426 0.89095 1.20756 1.09902 0.95238 0.96786 1.98339 1.81165 1.87641 1.34221 1.23906 0.96426 1.00410 0.91463 1.77503 1.20155 0.89707 1.22567 1.22088 0.94711 0.81571 1.04034 0.92106 0.89055 0.89101 0.90374 0.89176 0.89508 0.88467 0.79888 0.79083 0.90419 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.95 29.55 -169.99 -5.02 15.92 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -14.85 9.50 30.94 0.29 -14.56 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.81 5.16 36.01 0.19 -2.62 16 11 C 0.55 9.80 7.87 -10.98 -0.09 9.71 16 12 O -0.51 -11.15 16.19 5.56 0.09 -11.06 16 13 N -0.63 -7.83 3.32 -170.38 -0.57 -8.40 16 14 C 0.10 0.87 6.70 -2.41 -0.02 0.85 16 15 C -0.14 -0.98 6.78 -24.46 -0.17 -1.14 16 16 C 0.15 1.20 4.05 -66.09 -0.27 0.94 16 17 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 18 N -0.35 -3.29 3.63 -53.05 -0.19 -3.48 16 19 C 0.08 0.71 10.40 -17.16 -0.18 0.53 16 20 C -0.19 -1.74 6.65 -39.97 -0.27 -2.00 16 21 Cl -0.04 -0.37 29.30 -51.86 -1.52 -1.89 16 22 C 0.06 0.57 12.02 -17.34 -0.21 0.36 16 23 N -0.28 -2.83 12.57 30.64 0.39 -2.45 16 24 C 0.10 1.04 6.49 -3.07 -0.02 1.02 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 27 H 0.09 1.59 7.85 -51.91 -0.41 1.18 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.75 7.48 -51.92 -0.39 0.37 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.18 1.46 7.02 -52.49 -0.37 1.10 16 33 H 0.19 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.08 0.84 6.01 -51.93 -0.31 0.53 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -34.21 332.17 -8.10 -42.32 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -3.98 Total: -2.29 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.82 Total: -4.94 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.36 Total: -39.29 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.21 -8.10 -42.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290965157.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.264 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds