Wall clock time and date at job start Tue Mar 31 2020 10:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50694 * 120.00432 * 2 1 4 4 N 1.46495 * 109.47441 * 124.99581 * 3 2 1 5 5 C 1.46496 * 120.00183 * 275.00206 * 4 3 2 6 6 C 1.50699 * 109.47372 * 274.99668 * 5 4 3 7 7 H 1.07997 * 119.99694 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00170 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00151 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00158 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47031 * 89.99683 * 10 8 6 12 12 H 1.48494 * 109.47174 * 209.99861 * 10 8 6 13 13 H 1.48500 * 109.46693 * 330.00157 * 10 8 6 14 14 S 1.65600 * 120.00043 * 95.00118 * 4 3 2 15 15 O 1.42093 * 106.40360 * 156.46403 * 14 4 3 16 16 O 1.42101 * 106.40238 * 23.54012 * 14 4 3 17 17 C 1.76202 * 107.21710 * 270.00273 * 14 4 3 18 18 C 1.38239 * 119.98781 * 270.29615 * 17 14 4 19 19 C 1.38212 * 120.01553 * 180.25717 * 18 17 14 20 20 C 1.38361 * 119.98341 * 359.46433 * 19 18 17 21 21 Cl 1.73597 * 120.00859 * 180.27890 * 20 19 18 22 22 C 1.38346 * 119.97306 * 0.25744 * 20 19 18 23 23 C 1.38210 * 119.98768 * 0.02562 * 22 20 19 24 24 H 1.08005 * 119.99415 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00356 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.99683 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.47168 * 4.99936 * 3 2 1 28 28 H 1.08995 * 109.47505 * 245.00126 * 3 2 1 29 29 H 1.09001 * 109.47118 * 34.99622 * 5 4 3 30 30 H 1.08999 * 109.47232 * 154.99839 * 5 4 3 31 31 H 0.96992 * 120.00549 * 180.02562 * 9 8 6 32 32 H 1.08004 * 119.99430 * 359.97438 * 18 17 14 33 33 H 1.08002 * 120.01126 * 179.75014 * 19 18 17 34 34 H 1.08002 * 120.00348 * 180.02562 * 22 20 19 35 35 H 1.08002 * 119.99295 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5285 1.7621 2.4522 6 6 2.5993 3.2646 2.5449 7 1 2.9549 3.8413 1.7039 8 6 2.2091 3.9030 3.7030 9 7 2.2703 5.2142 3.7837 10 14 1.5934 2.9055 5.1575 11 1 2.7382 2.5498 6.0339 12 1 0.6108 3.7089 5.9283 13 1 0.9418 1.6648 4.6663 14 16 4.5713 0.8758 0.9174 15 8 5.3147 1.5044 1.9524 16 8 4.8569 1.0542 -0.4631 17 6 4.6594 -0.8572 1.2237 18 6 4.9072 -1.3212 2.5021 19 6 4.9816 -2.6803 2.7420 20 6 4.7971 -3.5767 1.7043 21 17 4.8833 -5.2841 2.0063 22 6 4.5434 -3.1119 0.4263 23 6 4.4750 -1.7524 0.1865 24 1 -0.5399 0.9354 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4025 -0.9313 29 1 1.4984 1.4372 2.5981 30 1 3.1613 1.3204 3.2220 31 1 1.9962 5.6633 4.5985 32 1 5.0471 -0.6214 3.3128 33 1 5.1792 -3.0426 3.7400 34 1 4.3989 -3.8112 -0.3840 35 1 4.2774 -1.3894 -0.8113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298711007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:54 Heat of formation + Delta-G solvation = -25.323571 kcal Electronic energy + Delta-G solvation = -22116.201321 eV Core-core repulsion = 18654.148799 eV Total energy + Delta-G solvation = -3462.052522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.42190 -36.89906 -36.82681 -36.54397 -35.36337 -33.25944 -32.02692 -31.37964 -31.15445 -28.14439 -25.08575 -23.31977 -23.17288 -21.96102 -19.94480 -18.76238 -17.87241 -16.99368 -16.94778 -16.30319 -16.16114 -15.53212 -14.83820 -14.56357 -14.22600 -13.94438 -13.87622 -13.79648 -13.20070 -12.86271 -12.64836 -12.28494 -12.03970 -11.94196 -11.88162 -11.62838 -11.60495 -11.39234 -11.16662 -11.07095 -10.77225 -10.72256 -10.44969 -10.25474 -9.61594 -9.34933 -9.30848 -9.25091 -8.62794 -8.25338 -6.11599 -4.11411 0.40286 0.83316 0.99334 1.71046 2.40960 3.07619 3.24491 3.29769 3.31950 3.60517 4.17675 4.34978 4.35445 4.56480 4.72081 5.02458 5.07786 5.18665 5.24943 5.27387 5.31527 5.50036 5.63155 5.66227 5.83251 5.90763 5.99488 6.13271 6.29308 6.44231 6.66897 6.74784 6.83952 7.02109 7.27653 7.52761 8.44389 8.93133 9.47065 11.01759 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.004827 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.954815 B = 5798.764823 C = 6168.033032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.174 4.174 3 C 0.144 3.856 4 N -0.969 5.969 5 C 0.226 3.774 6 C -0.532 4.532 7 H 0.080 0.920 8 C 0.076 3.924 9 N -0.893 5.893 10 Si 0.867 3.133 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.264 1.264 14 S 2.684 3.316 15 O -0.935 6.935 16 O -0.967 6.967 17 C -0.671 4.671 18 C -0.005 4.005 19 C -0.133 4.133 20 C 0.011 3.989 21 Cl -0.066 7.066 22 C -0.136 4.136 23 C -0.010 4.010 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.037 0.963 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.002 -18.546 -5.701 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.194 4.194 3 C 0.018 3.982 4 N -0.807 5.807 5 C 0.103 3.897 6 C -0.571 4.571 7 H 0.098 0.902 8 C -0.127 4.127 9 N -0.531 5.531 10 Si 0.694 3.306 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.188 1.188 14 S 2.771 3.229 15 O -0.925 6.925 16 O -0.957 6.957 17 C -0.755 4.755 18 C -0.024 4.024 19 C -0.152 4.152 20 C -0.016 4.016 21 Cl -0.037 7.037 22 C -0.155 4.155 23 C -0.030 4.030 24 H 0.120 0.880 25 H 0.111 0.889 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.170 0.830 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.674 -18.023 -5.753 18.993 hybrid contribution -0.636 -1.434 1.190 1.969 sum 1.038 -19.458 -4.563 20.013 Atomic orbital electron populations 1.23832 0.95812 1.01815 1.00259 1.23508 0.96715 0.99042 1.00160 1.20443 0.93356 0.95585 0.88822 1.57188 1.27279 1.78565 1.17667 1.19505 0.95793 0.96710 0.77680 1.21340 1.44472 0.89483 1.01853 0.90196 1.24832 0.95021 0.94762 0.98097 1.69882 1.47597 1.07716 1.27920 0.86992 0.79394 0.80741 0.83502 1.19731 1.20904 1.18844 1.02403 0.73550 0.73279 0.73679 1.93623 1.68852 1.72150 1.57854 1.93517 1.83668 1.85277 1.33244 1.31732 1.14453 1.28729 1.00561 1.21029 0.90345 0.95525 0.95518 1.21213 1.02315 0.92661 0.99052 1.21242 1.00003 0.85006 0.95372 1.98386 1.96399 1.12675 1.96199 1.21158 1.02577 0.96231 0.95523 1.20923 0.91570 0.91946 0.98517 0.88028 0.88897 0.87994 0.88413 0.88949 0.94475 0.95253 0.92460 0.83025 0.84028 0.84153 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 14.32 29.01 0.42 -1.77 16 2 C -0.17 -2.34 9.84 -36.03 -0.35 -2.69 16 3 C 0.14 2.30 6.12 -5.20 -0.03 2.27 16 4 N -0.97 -18.42 2.75 -116.96 -0.32 -18.74 16 5 C 0.23 5.04 4.17 -5.20 -0.02 5.02 16 6 C -0.53 -14.52 9.94 -34.44 -0.34 -14.86 16 7 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 8 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 10 Si 0.87 20.39 27.47 -169.99 -4.67 15.72 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 14 S 2.68 49.53 5.64 -107.50 -0.61 48.92 16 15 O -0.93 -20.65 16.26 -57.17 -0.93 -21.58 16 16 O -0.97 -18.40 15.83 -57.17 -0.91 -19.31 16 17 C -0.67 -9.87 5.97 -39.58 -0.24 -10.11 16 18 C 0.00 -0.07 9.52 -39.59 -0.38 -0.44 16 19 C -0.13 -1.55 9.83 -39.55 -0.39 -1.94 16 20 C 0.01 0.12 6.32 -39.50 -0.25 -0.13 16 21 Cl -0.07 -0.64 28.96 -51.86 -1.50 -2.14 16 22 C -0.14 -1.46 9.83 -39.55 -0.39 -1.85 16 23 C -0.01 -0.13 8.89 -39.59 -0.35 -0.48 16 24 H 0.10 1.23 7.84 -52.48 -0.41 0.82 16 25 H 0.09 0.97 8.06 -52.49 -0.42 0.55 16 26 H 0.10 1.23 7.41 -52.49 -0.39 0.84 16 27 H 0.10 1.62 7.76 -51.92 -0.40 1.22 16 28 H 0.09 1.37 6.91 -51.93 -0.36 1.01 16 29 H 0.04 0.80 7.17 -51.93 -0.37 0.43 16 30 H 0.03 0.65 7.04 -51.93 -0.37 0.28 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.15 2.05 7.62 -52.48 -0.40 1.65 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.15 1.60 7.62 -52.49 -0.40 1.20 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -32.40 331.75 -9.54 -41.95 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -3.96 Total: 1.12 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -2.42 Total: -24.97 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.45 Total: -44.72 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.83 Total: -40.88 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Atomic # 16 Polarization: 49.53 SS G_CDS: -0.61 Total: 48.92 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.40 -9.54 -41.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298711007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.622 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds