Wall clock time and date at job start Tue Mar 31 2020 10:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50694 * 120.00432 * 2 1 4 4 N 1.46495 * 109.47441 * 124.99581 * 3 2 1 5 5 C 1.46496 * 120.00183 * 275.00206 * 4 3 2 6 6 C 1.50699 * 109.47372 * 274.99668 * 5 4 3 7 7 H 1.07997 * 119.99694 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00170 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00151 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00158 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47031 * 89.99683 * 10 8 6 12 12 H 1.48494 * 109.47174 * 209.99861 * 10 8 6 13 13 H 1.48500 * 109.46693 * 330.00157 * 10 8 6 14 14 S 1.65600 * 120.00043 * 95.00118 * 4 3 2 15 15 O 1.42093 * 106.40360 * 156.46403 * 14 4 3 16 16 O 1.42101 * 106.40238 * 23.54012 * 14 4 3 17 17 C 1.76202 * 107.21710 * 270.00273 * 14 4 3 18 18 C 1.38239 * 119.98781 * 270.29615 * 17 14 4 19 19 C 1.38212 * 120.01553 * 180.25717 * 18 17 14 20 20 C 1.38361 * 119.98341 * 359.46433 * 19 18 17 21 21 Cl 1.73597 * 120.00859 * 180.27890 * 20 19 18 22 22 C 1.38346 * 119.97306 * 0.25744 * 20 19 18 23 23 C 1.38210 * 119.98768 * 0.02562 * 22 20 19 24 24 H 1.08005 * 119.99415 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00356 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.99683 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.47168 * 4.99936 * 3 2 1 28 28 H 1.08995 * 109.47505 * 245.00126 * 3 2 1 29 29 H 1.09001 * 109.47118 * 34.99622 * 5 4 3 30 30 H 1.08999 * 109.47232 * 154.99839 * 5 4 3 31 31 H 0.96992 * 120.00549 * 180.02562 * 9 8 6 32 32 H 1.08004 * 119.99430 * 359.97438 * 18 17 14 33 33 H 1.08002 * 120.01126 * 179.75014 * 19 18 17 34 34 H 1.08002 * 120.00348 * 180.02562 * 22 20 19 35 35 H 1.08002 * 119.99295 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5285 1.7621 2.4522 6 6 2.5993 3.2646 2.5449 7 1 2.9549 3.8413 1.7039 8 6 2.2091 3.9030 3.7030 9 7 2.2703 5.2142 3.7837 10 14 1.5934 2.9055 5.1575 11 1 2.7382 2.5498 6.0339 12 1 0.6108 3.7089 5.9283 13 1 0.9418 1.6648 4.6663 14 16 4.5713 0.8758 0.9174 15 8 5.3147 1.5044 1.9524 16 8 4.8569 1.0542 -0.4631 17 6 4.6594 -0.8572 1.2237 18 6 4.9072 -1.3212 2.5021 19 6 4.9816 -2.6803 2.7420 20 6 4.7971 -3.5767 1.7043 21 17 4.8833 -5.2841 2.0063 22 6 4.5434 -3.1119 0.4263 23 6 4.4750 -1.7524 0.1865 24 1 -0.5399 0.9354 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4025 -0.9313 29 1 1.4984 1.4372 2.5981 30 1 3.1613 1.3204 3.2220 31 1 1.9962 5.6633 4.5985 32 1 5.0471 -0.6214 3.3128 33 1 5.1792 -3.0426 3.7400 34 1 4.3989 -3.8112 -0.3840 35 1 4.2774 -1.3894 -0.8113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298711007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:54 Heat of formation + Delta-G solvation = -46.635299 kcal Electronic energy + Delta-G solvation = -22117.125467 eV Core-core repulsion = 18654.148799 eV Total energy + Delta-G solvation = -3462.976668 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35907 -38.40340 -38.00265 -37.64750 -36.91617 -34.95094 -33.65949 -32.30261 -32.13445 -29.91883 -26.54452 -24.37863 -24.10219 -23.76310 -21.03717 -20.00825 -19.27015 -18.84474 -18.37774 -17.52128 -17.48451 -16.70443 -16.10882 -15.76531 -15.76243 -15.35169 -14.81530 -14.71633 -14.60189 -14.42400 -13.91834 -13.84526 -13.48516 -13.28676 -13.18438 -13.03742 -12.87327 -12.80716 -12.48820 -12.36528 -12.15191 -11.99203 -11.90540 -11.81937 -11.67718 -10.76136 -10.30531 -10.26206 -10.25281 -9.81560 -8.26626 -6.32166 -0.73816 -0.44586 0.08283 0.86675 1.36226 1.39253 1.41701 1.49923 1.99076 2.35435 2.37151 2.78866 3.07293 3.22114 3.62322 3.72501 3.88079 4.09889 4.14788 4.19046 4.38535 4.39427 4.69675 4.72683 4.76798 4.83771 4.89104 4.96829 4.99062 5.11518 5.30022 5.49156 5.51467 5.63257 5.75514 5.97189 6.31974 6.71156 7.30631 8.90759 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.004827 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.954815 B = 5798.764823 C = 6168.033032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.185 4.185 3 C 0.137 3.863 4 N -0.978 5.978 5 C 0.235 3.765 6 C -0.540 4.540 7 H 0.032 0.968 8 C 0.011 3.989 9 N -0.947 5.947 10 Si 0.936 3.064 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.229 1.229 14 S 2.687 3.313 15 O -0.984 6.984 16 O -0.983 6.983 17 C -0.674 4.674 18 C -0.021 4.021 19 C -0.130 4.130 20 C 0.012 3.988 21 Cl -0.047 7.047 22 C -0.125 4.125 23 C -0.012 4.012 24 H 0.097 0.903 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.267 0.733 32 H 0.146 0.854 33 H 0.165 0.835 34 H 0.173 0.827 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 -22.940 -5.401 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.205 4.205 3 C 0.013 3.987 4 N -0.815 5.815 5 C 0.111 3.889 6 C -0.580 4.580 7 H 0.050 0.950 8 C -0.187 4.187 9 N -0.588 5.588 10 Si 0.758 3.242 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.152 1.152 14 S 2.781 3.219 15 O -0.975 6.975 16 O -0.973 6.973 17 C -0.763 4.763 18 C -0.041 4.041 19 C -0.149 4.149 20 C -0.015 4.015 21 Cl -0.018 7.018 22 C -0.145 4.145 23 C -0.032 4.032 24 H 0.115 0.885 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.182 0.818 34 H 0.190 0.810 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.613 -22.377 -5.500 23.052 hybrid contribution -0.254 -0.152 0.976 1.019 sum 0.360 -22.529 -4.525 22.982 Atomic orbital electron populations 1.24058 0.95430 1.02915 0.97974 1.23364 0.97017 0.97996 1.02136 1.20582 0.93024 0.97095 0.88048 1.57081 1.27706 1.79494 1.17201 1.19233 0.96867 0.93174 0.79658 1.21669 1.43548 0.92289 1.00452 0.95006 1.25852 0.95302 0.95875 1.01662 1.70059 1.49567 1.10044 1.29092 0.85897 0.79107 0.80208 0.79032 1.19152 1.20605 1.15216 1.01756 0.72849 0.74650 0.72668 1.93556 1.70104 1.74710 1.59113 1.93482 1.83748 1.86410 1.33688 1.30937 1.17738 1.25515 1.02123 1.21088 0.91291 0.96693 0.94985 1.21411 1.01396 0.91633 1.00452 1.21418 0.98732 0.85944 0.95408 1.98403 1.96174 1.11042 1.96144 1.21471 1.00865 0.95805 0.96319 1.21140 0.91171 0.92457 0.98421 0.88475 0.86222 0.86176 0.90007 0.88511 0.92748 0.94482 0.92380 0.83639 0.81792 0.80984 0.81991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 14.32 67.77 0.97 -2.63 16 2 C -0.19 -4.59 9.84 25.64 0.25 -4.34 16 3 C 0.14 4.42 6.12 85.63 0.52 4.94 16 4 N -0.98 -37.71 2.75 -523.94 -1.44 -39.15 16 5 C 0.24 10.50 4.17 85.63 0.36 10.86 16 6 C -0.54 -30.72 9.94 25.60 0.25 -30.47 16 7 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 8 C 0.01 0.63 5.47 84.65 0.46 1.10 16 9 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 10 Si 0.94 41.83 27.47 68.60 1.88 43.72 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.23 -8.92 6.54 99.48 0.65 -8.27 16 14 S 2.69 101.33 5.64 -56.49 -0.32 101.01 16 15 O -0.98 -45.51 16.26 -128.00 -2.08 -47.59 16 16 O -0.98 -38.24 15.83 -128.00 -2.03 -40.27 16 17 C -0.67 -18.96 5.97 22.27 0.13 -18.82 16 18 C -0.02 -0.54 9.52 22.26 0.21 -0.33 16 19 C -0.13 -2.63 9.83 22.29 0.22 -2.41 16 20 C 0.01 0.22 6.32 22.32 0.14 0.36 16 21 Cl -0.05 -0.73 28.96 -2.72 -0.08 -0.80 16 22 C -0.13 -2.19 9.83 22.29 0.22 -1.97 16 23 C -0.01 -0.27 8.89 22.26 0.20 -0.08 16 24 H 0.10 2.18 7.84 -2.91 -0.02 2.16 16 25 H 0.12 1.99 8.06 -2.91 -0.02 1.97 16 26 H 0.12 2.53 7.41 -2.91 -0.02 2.51 16 27 H 0.08 2.82 7.76 -2.38 -0.02 2.80 16 28 H 0.10 2.95 6.91 -2.39 -0.02 2.93 16 29 H 0.05 2.25 7.17 -2.39 -0.02 2.23 16 30 H 0.04 1.61 7.04 -2.39 -0.02 1.59 16 31 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.15 3.88 7.62 -2.91 -0.02 3.86 16 33 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 34 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.16 3.06 7.62 -2.91 -0.02 3.03 16 Total: -1.00 -73.62 331.75 1.22 -72.39 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.04 Total: 13.41 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 3.94 Total: -43.78 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -1.14 Total: -98.08 kcal Atomic # 8 Polarization: -83.75 SS G_CDS: -4.11 Total: -87.86 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.72 kcal Atomic # 16 Polarization: 101.33 SS G_CDS: -0.32 Total: 101.01 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.80 kcal Total: -73.62 1.22 -72.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298711007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.758 kcal (2) G-P(sol) polarization free energy of solvation -73.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds