Wall clock time and date at job start Tue Mar 31 2020 10:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48497 * 109.46812 * 269.99728 * 3 2 1 5 5 H 1.48494 * 109.47501 * 29.99808 * 3 2 1 6 6 H 1.48502 * 109.47175 * 149.99831 * 3 2 1 7 7 C 1.37877 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00355 * 175.28671 * 7 2 1 9 9 C 1.50704 * 119.99718 * 355.55546 * 7 2 1 10 10 C 1.52999 * 115.55107 * 274.99337 * 9 7 2 11 11 N 1.46496 * 109.46950 * 294.32765 * 10 9 7 12 12 S 1.65609 * 119.99755 * 159.12866 * 11 10 9 13 13 O 1.42098 * 106.40293 * 178.54215 * 12 11 10 14 14 O 1.42103 * 106.40067 * 311.46029 * 12 11 10 15 15 C 1.76201 * 107.21704 * 65.00301 * 12 11 10 16 16 C 1.38241 * 119.98172 * 269.72517 * 15 12 11 17 17 C 1.38225 * 120.00844 * 179.72778 * 16 15 12 18 18 C 1.38352 * 119.98304 * 0.54793 * 17 16 15 19 19 Cl 1.73604 * 120.00811 * 179.70709 * 18 17 16 20 20 C 1.38352 * 119.97617 * 359.72175 * 18 17 16 21 21 C 1.38213 * 119.98469 * 0.02562 * 20 18 17 22 22 C 1.53001 * 117.49532 * 129.32093 * 9 7 2 23 23 C 1.53005 * 117.49556 * 60.66339 * 9 7 2 24 24 H 0.97001 * 120.00505 * 5.00298 * 1 2 3 25 25 H 1.08996 * 109.47214 * 54.33422 * 10 9 7 26 26 H 1.09000 * 109.46724 * 174.33354 * 10 9 7 27 27 H 0.97000 * 120.00503 * 339.13613 * 11 10 9 28 28 H 1.07993 * 120.00236 * 0.02562 * 16 15 12 29 29 H 1.07998 * 120.00305 * 180.27358 * 17 16 15 30 30 H 1.07998 * 120.00653 * 179.97438 * 20 18 17 31 31 H 1.08003 * 119.98942 * 179.97438 * 21 20 18 32 32 H 1.09000 * 117.49793 * 0.02562 * 22 9 7 33 33 H 1.09002 * 117.49496 * 145.02147 * 22 9 7 34 34 H 1.09001 * 117.49741 * 214.97952 * 23 9 7 35 35 H 1.08998 * 117.49782 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0763 9 6 1.2544 -2.4971 0.1023 10 6 0.9144 -2.9537 1.5224 11 7 2.1508 -3.2588 2.2464 12 16 2.1587 -3.2726 3.9025 13 8 3.4767 -3.6308 4.2945 14 8 1.5242 -2.0704 4.3167 15 6 1.1104 -4.5917 4.4180 16 6 -0.2349 -4.3602 4.6363 17 6 -1.0588 -5.3958 5.0353 18 6 -0.5345 -6.6618 5.2271 19 17 -1.5673 -7.9613 5.7356 20 6 0.8130 -6.8915 5.0139 21 6 1.6348 -5.8563 4.6098 22 6 1.5761 -3.5798 -0.9300 23 6 0.2484 -2.8214 -1.0040 24 1 -0.4851 0.8368 -0.0733 25 1 0.3764 -2.1597 2.0403 26 1 0.2901 -3.8461 1.4774 27 1 2.9649 -3.4526 1.7560 28 1 -0.6432 -3.3711 4.4904 29 1 -2.1106 -5.2158 5.2015 30 1 1.2228 -7.8794 5.1638 31 1 2.6868 -6.0355 4.4438 32 1 2.3305 -3.3496 -1.6823 33 1 1.5450 -4.6173 -0.5973 34 1 -0.6555 -3.3603 -0.7201 35 1 0.1289 -2.0919 -1.8051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332184218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:19 Heat of formation + Delta-G solvation = -32.526085 kcal Electronic energy + Delta-G solvation = -21751.128345 eV Core-core repulsion = 18288.763499 eV Total energy + Delta-G solvation = -3462.364846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.44238 -37.16370 -36.83792 -36.80939 -35.50928 -33.35826 -31.91878 -31.39928 -31.18606 -26.01798 -24.90275 -23.37280 -23.19140 -21.17403 -19.48381 -19.15692 -18.07045 -17.19351 -16.59669 -16.26581 -15.90864 -15.07175 -14.85698 -14.60195 -14.16944 -13.88677 -13.84035 -13.59848 -13.18824 -12.88910 -12.33866 -12.07675 -11.99100 -11.96011 -11.76821 -11.64725 -11.29687 -11.17410 -10.95903 -10.92061 -10.78447 -10.50522 -10.24514 -9.56849 -9.37050 -9.36466 -9.19110 -8.68454 -8.45663 -8.18430 -6.05191 -4.12854 0.37294 0.76249 0.97985 1.70352 3.04530 3.30387 3.38974 3.42229 3.51105 4.05277 4.32835 4.40334 4.55256 4.69334 5.00028 5.19816 5.23177 5.25973 5.27880 5.61667 5.64307 5.81423 5.84502 5.88138 6.18367 6.21264 6.31597 6.42210 6.45718 6.67497 6.96844 7.05889 7.35234 7.53423 7.61988 7.85806 8.36279 8.87754 9.54092 11.02386 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.019210 B = 0.003963 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.222499 B = 7064.429680 C = 7552.144935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.073 3.927 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.495 4.495 8 H 0.060 0.940 9 C 0.033 3.967 10 C 0.158 3.842 11 N -1.091 6.091 12 S 2.691 3.309 13 O -0.970 6.970 14 O -0.949 6.949 15 C -0.671 4.671 16 C -0.004 4.004 17 C -0.133 4.133 18 C 0.012 3.988 19 Cl -0.064 7.064 20 C -0.136 4.136 21 C -0.007 4.007 22 C -0.212 4.212 23 C -0.144 4.144 24 H 0.261 0.739 25 H 0.083 0.917 26 H 0.034 0.966 27 H 0.418 0.582 28 H 0.153 0.847 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.150 0.850 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 -13.794 8.699 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.532 4.532 8 H 0.079 0.921 9 C 0.031 3.969 10 C 0.033 3.967 11 N -0.852 5.852 12 S 2.778 3.222 13 O -0.960 6.960 14 O -0.939 6.939 15 C -0.755 4.755 16 C -0.024 4.024 17 C -0.152 4.152 18 C -0.014 4.014 19 Cl -0.035 7.035 20 C -0.155 4.155 21 C -0.026 4.026 22 C -0.249 4.249 23 C -0.183 4.183 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.052 0.948 27 H 0.253 0.747 28 H 0.171 0.829 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.850 -13.195 9.491 16.358 hybrid contribution 0.021 0.032 -0.324 0.327 sum -1.830 -13.163 9.166 16.144 Atomic orbital electron populations 1.69956 1.05839 1.26898 1.48687 1.24954 0.94856 0.98957 0.94280 0.86649 0.80210 0.83592 0.77971 1.20780 1.21043 1.19651 1.20347 0.92728 0.88462 1.51677 0.92145 1.18940 0.99096 0.93426 0.85415 1.21001 0.82799 0.97400 0.95538 1.55093 1.19969 1.86430 1.23747 1.02041 0.73174 0.73903 0.73112 1.93550 1.35801 1.84684 1.81965 1.93608 1.77346 1.41719 1.81247 1.31483 1.10554 1.16896 1.16591 1.21049 0.91109 0.99737 0.90457 1.21221 1.01232 0.91025 1.01757 1.21267 0.91856 0.89712 0.98613 1.98390 1.67314 1.48807 1.89010 1.21169 0.91659 1.00589 1.02126 1.20920 1.00232 0.90197 0.91295 1.23028 1.00691 0.95520 1.05647 1.22496 0.90695 1.01378 1.03687 0.92897 0.89889 0.94812 0.74695 0.82906 0.83930 0.84101 0.83279 0.90334 0.91685 0.91892 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.85 12.65 55.43 0.70 -23.15 16 2 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.49 -12.69 8.75 -34.44 -0.30 -12.99 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.03 0.75 1.49 -155.66 -0.23 0.52 16 10 C 0.16 3.13 6.09 -4.04 -0.02 3.11 16 11 N -1.09 -18.96 5.88 -10.62 -0.06 -19.02 16 12 S 2.69 44.70 5.74 -107.50 -0.62 44.09 16 13 O -0.97 -17.22 17.28 -57.17 -0.99 -18.21 16 14 O -0.95 -19.02 16.68 -57.17 -0.95 -19.97 16 15 C -0.67 -9.21 5.95 -39.58 -0.24 -9.45 16 16 C 0.00 -0.05 9.52 -39.58 -0.38 -0.43 16 17 C -0.13 -1.49 9.83 -39.54 -0.39 -1.88 16 18 C 0.01 0.14 6.32 -39.50 -0.25 -0.11 16 19 Cl -0.06 -0.62 28.96 -51.86 -1.50 -2.12 16 20 C -0.14 -1.43 9.83 -39.55 -0.39 -1.82 16 21 C -0.01 -0.08 9.52 -39.59 -0.38 -0.46 16 22 C -0.21 -4.17 9.96 -26.69 -0.27 -4.43 16 23 C -0.14 -3.12 9.15 -26.69 -0.24 -3.36 16 24 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 25 H 0.08 1.83 7.64 -51.93 -0.40 1.44 16 26 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.42 6.79 8.70 -34.48 -0.30 6.49 16 28 H 0.15 1.92 7.61 -52.49 -0.40 1.52 16 29 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.15 1.52 7.62 -52.48 -0.40 1.12 16 32 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -30.55 334.36 -10.58 -41.13 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.00 Total: 5.79 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -3.18 Total: -29.47 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.64 Total: -42.17 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -1.94 Total: -38.18 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 44.70 SS G_CDS: -0.62 Total: 44.09 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.55 -10.58 -41.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332184218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.606 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds