Wall clock time and date at job start Tue Mar 31 2020 10:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48497 * 109.46812 * 269.99728 * 3 2 1 5 5 H 1.48494 * 109.47501 * 29.99808 * 3 2 1 6 6 H 1.48502 * 109.47175 * 149.99831 * 3 2 1 7 7 C 1.37877 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00355 * 175.28671 * 7 2 1 9 9 C 1.50704 * 119.99718 * 355.55546 * 7 2 1 10 10 C 1.52999 * 115.55107 * 274.99337 * 9 7 2 11 11 N 1.46496 * 109.46950 * 294.32765 * 10 9 7 12 12 S 1.65609 * 119.99755 * 159.12866 * 11 10 9 13 13 O 1.42098 * 106.40293 * 178.54215 * 12 11 10 14 14 O 1.42103 * 106.40067 * 311.46029 * 12 11 10 15 15 C 1.76201 * 107.21704 * 65.00301 * 12 11 10 16 16 C 1.38241 * 119.98172 * 269.72517 * 15 12 11 17 17 C 1.38225 * 120.00844 * 179.72778 * 16 15 12 18 18 C 1.38352 * 119.98304 * 0.54793 * 17 16 15 19 19 Cl 1.73604 * 120.00811 * 179.70709 * 18 17 16 20 20 C 1.38352 * 119.97617 * 359.72175 * 18 17 16 21 21 C 1.38213 * 119.98469 * 0.02562 * 20 18 17 22 22 C 1.53001 * 117.49532 * 129.32093 * 9 7 2 23 23 C 1.53005 * 117.49556 * 60.66339 * 9 7 2 24 24 H 0.97001 * 120.00505 * 5.00298 * 1 2 3 25 25 H 1.08996 * 109.47214 * 54.33422 * 10 9 7 26 26 H 1.09000 * 109.46724 * 174.33354 * 10 9 7 27 27 H 0.97000 * 120.00503 * 339.13613 * 11 10 9 28 28 H 1.07993 * 120.00236 * 0.02562 * 16 15 12 29 29 H 1.07998 * 120.00305 * 180.27358 * 17 16 15 30 30 H 1.07998 * 120.00653 * 179.97438 * 20 18 17 31 31 H 1.08003 * 119.98942 * 179.97438 * 21 20 18 32 32 H 1.09000 * 117.49793 * 0.02562 * 22 9 7 33 33 H 1.09002 * 117.49496 * 145.02147 * 22 9 7 34 34 H 1.09001 * 117.49741 * 214.97952 * 23 9 7 35 35 H 1.08998 * 117.49782 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0763 9 6 1.2544 -2.4971 0.1023 10 6 0.9144 -2.9537 1.5224 11 7 2.1508 -3.2588 2.2464 12 16 2.1587 -3.2726 3.9025 13 8 3.4767 -3.6308 4.2945 14 8 1.5242 -2.0704 4.3167 15 6 1.1104 -4.5917 4.4180 16 6 -0.2349 -4.3602 4.6363 17 6 -1.0588 -5.3958 5.0353 18 6 -0.5345 -6.6618 5.2271 19 17 -1.5673 -7.9613 5.7356 20 6 0.8130 -6.8915 5.0139 21 6 1.6348 -5.8563 4.6098 22 6 1.5761 -3.5798 -0.9300 23 6 0.2484 -2.8214 -1.0040 24 1 -0.4851 0.8368 -0.0733 25 1 0.3764 -2.1597 2.0403 26 1 0.2901 -3.8461 1.4774 27 1 2.9649 -3.4526 1.7560 28 1 -0.6432 -3.3711 4.4904 29 1 -2.1106 -5.2158 5.2015 30 1 1.2228 -7.8794 5.1638 31 1 2.6868 -6.0355 4.4438 32 1 2.3305 -3.3496 -1.6823 33 1 1.5450 -4.6173 -0.5973 34 1 -0.6555 -3.3603 -0.7201 35 1 0.1289 -2.0919 -1.8051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332184218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:19 Heat of formation + Delta-G solvation = -51.909678 kcal Electronic energy + Delta-G solvation = -21751.968881 eV Core-core repulsion = 18288.763499 eV Total energy + Delta-G solvation = -3463.205382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34106 -38.78870 -38.26730 -37.64208 -36.93736 -34.87900 -33.86679 -32.28513 -32.12314 -27.82693 -26.62136 -24.34885 -24.08319 -22.83091 -21.17371 -20.47654 -19.18467 -18.65965 -18.00178 -17.48769 -17.15381 -16.61805 -16.33063 -15.78474 -15.64905 -15.25342 -14.79441 -14.73625 -14.64873 -14.03896 -13.88502 -13.72976 -13.21844 -13.13304 -13.00028 -12.87569 -12.83172 -12.79324 -12.78151 -12.35816 -11.98360 -11.96308 -11.92999 -11.31992 -10.97107 -10.35666 -10.28482 -10.24690 -10.21964 -9.88587 -8.06039 -6.16209 -0.69562 -0.42927 0.10029 0.87790 1.40242 1.45509 1.51833 1.98260 2.33402 2.45117 2.77350 3.22907 3.28248 3.57763 3.66146 3.73860 4.11308 4.21482 4.27023 4.41267 4.59198 4.63496 4.71722 4.74222 4.77736 4.78676 4.90468 5.00362 5.09831 5.35518 5.37216 5.53137 5.70057 5.79768 5.85047 6.25537 6.45798 6.89496 7.51815 9.00671 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.019210 B = 0.003963 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.222499 B = 7064.429680 C = 7552.144935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.028 3.972 3 Si 0.933 3.067 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.503 4.503 8 H 0.053 0.947 9 C 0.003 3.997 10 C 0.170 3.830 11 N -1.092 6.092 12 S 2.705 3.295 13 O -0.984 6.984 14 O -0.993 6.993 15 C -0.675 4.675 16 C -0.020 4.020 17 C -0.132 4.132 18 C 0.011 3.989 19 Cl -0.049 7.049 20 C -0.129 4.129 21 C -0.011 4.011 22 C -0.181 4.181 23 C -0.152 4.152 24 H 0.259 0.741 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.422 0.578 28 H 0.148 0.852 29 H 0.163 0.837 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.851 -16.344 9.247 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.173 4.173 3 Si 0.759 3.241 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.541 4.541 8 H 0.071 0.929 9 C 0.001 3.999 10 C 0.044 3.956 11 N -0.853 5.853 12 S 2.796 3.204 13 O -0.974 6.974 14 O -0.983 6.983 15 C -0.764 4.764 16 C -0.039 4.039 17 C -0.152 4.152 18 C -0.016 4.016 19 Cl -0.019 7.019 20 C -0.149 4.149 21 C -0.030 4.030 22 C -0.218 4.218 23 C -0.190 4.190 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.259 0.741 28 H 0.165 0.835 29 H 0.180 0.820 30 H 0.188 0.812 31 H 0.183 0.817 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.809 -15.710 10.009 18.715 hybrid contribution -0.007 0.690 -0.443 0.820 sum -1.816 -15.020 9.565 17.899 Atomic orbital electron populations 1.70037 1.06646 1.27095 1.50196 1.25541 0.95545 1.01415 0.94758 0.85944 0.79095 0.80930 0.78104 1.20008 1.21403 1.19703 1.20677 0.92702 0.90205 1.50473 0.92879 1.19053 1.00052 0.93552 0.87236 1.20699 0.83653 0.97613 0.93646 1.54965 1.19599 1.86791 1.23978 1.01208 0.72893 0.73797 0.72454 1.93522 1.37003 1.84961 1.81952 1.93553 1.78021 1.44950 1.81743 1.30867 1.10283 1.16418 1.18817 1.21110 0.91138 1.00262 0.91405 1.21419 1.02040 0.90734 1.00958 1.21441 0.92383 0.89984 0.97760 1.98403 1.66889 1.47917 1.88717 1.21486 0.91312 1.01433 1.00632 1.21172 1.01292 0.89586 0.90990 1.23024 0.98834 0.96374 1.03600 1.22411 0.92263 1.01660 1.02683 0.93215 0.92992 0.91846 0.74147 0.83462 0.81956 0.81173 0.81747 0.90600 0.88356 0.90256 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.13 12.65 21.45 0.27 -49.85 16 2 C 0.03 1.51 5.43 84.66 0.46 1.97 16 3 Si 0.93 43.55 29.54 68.60 2.03 45.57 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.50 -26.05 8.75 25.60 0.22 -25.82 16 8 H 0.05 2.75 7.82 -2.91 -0.02 2.72 16 9 C 0.00 0.13 1.49 -52.92 -0.08 0.06 16 10 C 0.17 6.66 6.09 86.38 0.53 7.18 16 11 N -1.09 -37.44 5.88 -187.50 -1.10 -38.54 16 12 S 2.70 89.75 5.74 -56.49 -0.32 89.43 16 13 O -0.98 -34.50 17.28 -128.00 -2.21 -36.72 16 14 O -0.99 -40.99 16.68 -128.00 -2.13 -43.13 16 15 C -0.67 -17.68 5.95 22.27 0.13 -17.54 16 16 C -0.02 -0.49 9.52 22.27 0.21 -0.27 16 17 C -0.13 -2.67 9.83 22.29 0.22 -2.45 16 18 C 0.01 0.21 6.32 22.32 0.14 0.35 16 19 Cl -0.05 -0.78 28.96 -2.72 -0.08 -0.85 16 20 C -0.13 -2.27 9.83 22.29 0.22 -2.05 16 21 C -0.01 -0.23 9.52 22.26 0.21 -0.02 16 22 C -0.18 -6.77 9.96 30.62 0.30 -6.47 16 23 C -0.15 -6.47 9.15 30.62 0.28 -6.19 16 24 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 25 H 0.05 2.35 7.64 -2.39 -0.02 2.33 16 26 H 0.06 2.09 8.09 -2.39 -0.02 2.07 16 27 H 0.42 13.41 8.70 -96.74 -0.84 12.57 16 28 H 0.15 3.74 7.61 -2.91 -0.02 3.72 16 29 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 31 H 0.17 2.91 7.62 -2.91 -0.02 2.88 16 32 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.10 3.03 8.14 -2.39 -0.02 3.02 16 34 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -65.67 334.36 -0.42 -66.10 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.28 Total: 19.25 kcal Atomic # 6 Polarization: -54.11 SS G_CDS: 2.85 Total: -51.25 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -0.83 Total: -88.39 kcal Atomic # 8 Polarization: -75.50 SS G_CDS: -4.35 Total: -79.85 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 89.75 SS G_CDS: -0.32 Total: 89.43 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.85 kcal Total: -65.67 -0.42 -66.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332184218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.186 kcal (2) G-P(sol) polarization free energy of solvation -65.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds