Wall clock time and date at job start Tue Mar 31 2020 11:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99889 * 2 1 4 4 C 1.53000 * 117.50101 * 14.21989 * 3 2 1 5 5 C 1.53004 * 117.49981 * 305.56066 * 3 2 1 6 6 S 1.65606 * 119.99817 * 180.02562 * 2 1 3 7 7 O 1.42099 * 106.40007 * 164.55882 * 6 2 1 8 8 O 1.42097 * 106.40229 * 31.63846 * 6 2 1 9 9 C 1.76197 * 107.21491 * 278.09935 * 6 2 1 10 10 C 1.38637 * 119.75751 * 113.53146 * 9 6 2 11 11 C 1.37601 * 120.25872 * 180.25795 * 10 9 6 12 12 C 1.40739 * 119.77729 * 359.44421 * 11 10 9 13 13 C 1.41391 * 120.24248 * 180.25629 * 12 11 10 14 14 H 1.08000 * 120.00342 * 152.00563 * 13 12 11 15 15 C 1.39945 * 120.00089 * 332.00909 * 13 12 11 16 16 N 1.30828 * 120.00402 * 161.20726 * 15 13 12 17 17 Si 1.86796 * 119.99749 * 341.21462 * 15 13 12 18 18 H 1.48501 * 109.47554 * 87.77242 * 17 15 13 19 19 H 1.48505 * 109.47222 * 207.77575 * 17 15 13 20 20 H 1.48503 * 109.47212 * 327.77450 * 17 15 13 21 21 C 1.40677 * 119.52221 * 0.27689 * 12 11 10 22 22 C 1.37758 * 119.73316 * 359.97438 * 21 12 11 23 23 Cl 1.73600 * 119.89296 * 179.97438 * 22 21 12 24 24 H 1.09001 * 109.47414 * 269.99967 * 1 2 3 25 25 H 1.09001 * 109.47469 * 29.99969 * 1 2 3 26 26 H 1.09008 * 109.47300 * 149.99863 * 1 2 3 27 27 H 1.09000 * 115.54796 * 159.89388 * 3 2 1 28 28 H 1.09001 * 117.49542 * 0.02562 * 4 3 2 29 29 H 1.08999 * 117.49648 * 145.02226 * 4 3 2 30 30 H 1.09003 * 117.49696 * 214.98262 * 5 3 2 31 31 H 1.09001 * 117.49738 * 359.97438 * 5 3 2 32 32 H 1.07996 * 119.87014 * 359.97438 * 10 9 6 33 33 H 1.08006 * 120.10891 * 179.72154 * 11 10 9 34 34 H 0.96993 * 120.00152 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.13582 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 1.4114 2.5383 0.3334 5 6 1.8671 2.2752 -1.1041 6 16 2.2930 -1.4342 -0.0006 7 8 3.6315 -1.1246 -0.3634 8 8 1.4885 -2.3616 -0.7161 9 6 2.3483 -2.0051 1.6654 10 6 1.6707 -3.1616 2.0193 11 6 1.7025 -3.6139 3.3185 12 6 2.4362 -2.9046 4.2877 13 6 2.4801 -3.3635 5.6243 14 1 3.3359 -3.1402 6.2441 15 6 1.4146 -4.1071 6.1443 16 7 1.5874 -4.8358 7.2170 17 14 -0.2542 -4.0593 5.3065 18 1 -0.3072 -5.1002 4.2487 19 1 -1.3190 -4.3176 6.3089 20 1 -0.4634 -2.7219 4.6957 21 6 3.1251 -1.7354 3.9171 22 6 3.0754 -1.2977 2.6119 23 17 3.9234 0.1449 2.1501 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 3.2322 1.2141 0.3381 28 1 0.3493 2.4295 0.5531 29 1 1.9292 3.3191 0.8904 30 1 2.6846 2.8830 -1.4920 31 1 1.1051 1.9931 -1.8306 32 1 1.1118 -3.7072 1.2734 33 1 1.1700 -4.5127 3.5925 34 1 0.8488 -5.3508 7.5775 35 1 3.6915 -1.1836 4.6527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334807994.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:16 Heat of formation + Delta-G solvation = -30.624525 kcal Electronic energy + Delta-G solvation = -22392.692488 eV Core-core repulsion = 18930.410100 eV Total energy + Delta-G solvation = -3462.282388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.15632 -38.07386 -36.71810 -35.92087 -35.24824 -34.10567 -33.02924 -31.02110 -29.87369 -26.55706 -25.98192 -22.37426 -22.09323 -21.55389 -21.23899 -18.63812 -17.97680 -17.79135 -16.99991 -16.10024 -15.67723 -14.91654 -14.68155 -14.66014 -14.08343 -13.87794 -13.33365 -13.14496 -13.00618 -12.79465 -12.60172 -12.36603 -11.86474 -11.69350 -11.52036 -11.49380 -11.30138 -11.26692 -11.12547 -11.07704 -10.95945 -10.76844 -10.47357 -10.11602 -10.05994 -9.76531 -9.43937 -8.56840 -8.35085 -7.97048 -7.50599 -5.10303 0.98845 1.79275 2.28090 2.66415 2.81423 2.93487 2.99757 3.36894 3.59816 3.87525 3.92524 4.35742 4.68207 4.85538 4.91608 5.00065 5.06384 5.26232 5.57138 5.62370 5.68992 5.71435 5.81651 5.94978 6.07949 6.09987 6.24413 6.28649 6.37842 6.59307 6.78988 6.81630 6.93663 7.04014 7.37456 7.53429 7.79293 8.10458 8.21590 9.47164 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.005175 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.594971 B = 5409.660927 C = 5707.888350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.975 5.975 3 C 0.089 3.911 4 C -0.185 4.185 5 C -0.199 4.199 6 S 2.699 3.301 7 O -0.962 6.962 8 O -0.979 6.979 9 C -0.799 4.799 10 C 0.025 3.975 11 C -0.261 4.261 12 C 0.118 3.882 13 C -0.400 4.400 14 H 0.103 0.897 15 C 0.079 3.921 16 N -0.767 5.767 17 Si 0.921 3.079 18 H -0.258 1.258 19 H -0.284 1.284 20 H -0.242 1.242 21 C -0.208 4.208 22 C 0.097 3.903 23 Cl -0.093 7.093 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.142 0.858 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.297 0.703 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 9.008 -7.551 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.809 5.809 3 C -0.018 4.018 4 C -0.224 4.224 5 C -0.239 4.239 6 S 2.796 3.204 7 O -0.952 6.952 8 O -0.969 6.969 9 C -0.893 4.893 10 C 0.005 3.995 11 C -0.281 4.281 12 C 0.114 3.886 13 C -0.425 4.425 14 H 0.121 0.879 15 C -0.146 4.146 16 N -0.387 5.387 17 Si 0.746 3.254 18 H -0.184 1.184 19 H -0.211 1.211 20 H -0.165 1.165 21 C -0.229 4.229 22 C 0.069 3.931 23 Cl -0.064 7.064 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.159 0.841 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.541 8.538 -8.083 12.279 hybrid contribution -0.787 0.064 0.715 1.065 sum -4.328 8.602 -7.368 12.125 Atomic orbital electron populations 1.21532 0.78990 1.03538 1.02161 1.57136 1.14533 1.20054 1.89131 1.21699 0.96991 0.80254 1.02815 1.23292 1.01227 0.99414 0.98424 1.23403 1.04150 1.03956 0.92340 1.01314 0.72929 0.71556 0.74577 1.93537 1.34818 1.83726 1.83119 1.93474 1.70640 1.61243 1.71588 1.29224 1.24750 1.12701 1.22662 1.20220 0.91920 0.91246 0.96118 1.21260 1.10187 1.03216 0.93394 1.17745 0.88768 0.88910 0.93215 1.19894 1.04046 1.22657 0.95904 0.87912 1.26446 1.02716 0.91006 0.94467 1.69657 1.35169 1.15906 1.17971 0.86215 0.78393 0.82183 0.78646 1.18359 1.21099 1.16526 1.20929 1.09258 0.99222 0.93460 1.19983 0.92918 0.86214 0.93993 1.98305 1.77310 1.38963 1.91828 0.92491 0.91058 0.90028 0.84051 0.88256 0.88283 0.88270 0.88655 0.86073 0.86624 0.89193 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 9.80 59.85 0.59 1.66 16 2 N -0.98 -15.32 3.52 -114.61 -0.40 -15.72 16 3 C 0.09 1.27 5.24 -67.93 -0.36 0.92 16 4 C -0.18 -2.06 9.75 -26.69 -0.26 -2.32 16 5 C -0.20 -2.25 10.02 -26.69 -0.27 -2.51 16 6 S 2.70 52.01 5.10 -107.50 -0.55 51.46 16 7 O -0.96 -20.10 15.19 -57.17 -0.87 -20.97 16 8 O -0.98 -20.06 15.73 -57.17 -0.90 -20.96 16 9 C -0.80 -16.85 5.94 -39.25 -0.23 -17.08 16 10 C 0.03 0.54 9.52 -39.67 -0.38 0.16 16 11 C -0.26 -5.86 7.34 -38.87 -0.29 -6.15 16 12 C 0.12 2.75 5.15 -106.83 -0.55 2.20 16 13 C -0.40 -9.56 9.58 -37.74 -0.36 -9.92 16 14 H 0.10 2.53 8.06 -52.49 -0.42 2.11 16 15 C 0.08 1.81 5.41 -17.34 -0.09 1.71 16 16 N -0.77 -17.78 13.93 55.55 0.77 -17.01 16 17 Si 0.92 18.40 24.61 -169.99 -4.18 14.21 16 18 H -0.26 -5.00 6.29 56.52 0.36 -4.64 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.24 -4.97 7.10 56.52 0.40 -4.57 16 21 C -0.21 -4.58 9.57 -38.84 -0.37 -4.95 16 22 C 0.10 2.05 6.29 -39.57 -0.25 1.80 16 23 Cl -0.09 -1.70 22.90 -51.86 -1.19 -2.89 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.73 6.24 -51.93 -0.32 0.40 16 26 H 0.08 1.06 7.12 -51.92 -0.37 0.69 16 27 H 0.14 2.18 4.83 -51.93 -0.25 1.92 16 28 H 0.10 1.02 6.69 -51.93 -0.35 0.68 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 1.01 7.79 -51.93 -0.40 0.61 16 32 H 0.12 2.36 7.31 -52.49 -0.38 1.98 16 33 H 0.12 2.51 4.31 -52.48 -0.23 2.28 16 34 H 0.30 6.13 8.30 -40.82 -0.34 5.79 16 35 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -26.94 308.20 -9.09 -36.03 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -3.60 Total: 5.68 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: -2.82 Total: -34.47 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.37 Total: -32.73 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.77 Total: -41.94 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -4.18 Total: 14.21 kcal Atomic # 16 Polarization: 52.01 SS G_CDS: -0.55 Total: 51.46 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -1.19 Total: -2.89 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.94 -9.09 -36.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334807994.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.409 kcal (2) G-P(sol) polarization free energy of solvation -26.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds