Wall clock time and date at job start Tue Mar 31 2020 11:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 120.00013 * 2 1 4 4 H 1.48493 * 109.47243 * 270.00172 * 3 2 1 5 5 H 1.48499 * 109.47227 * 30.00299 * 3 2 1 6 6 H 1.48498 * 109.47133 * 149.99761 * 3 2 1 7 7 C 1.38950 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00194 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99815 * 179.97438 * 7 2 1 10 10 C 1.34774 * 119.99954 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99911 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99535 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.46676 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99980 * 179.97438 * 13 12 10 15 15 O 1.21585 * 119.99845 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99944 * 179.97438 * 14 13 12 17 17 C 1.39943 * 119.99636 * 184.62044 * 16 14 13 18 18 C 1.38849 * 120.04817 * 144.90916 * 17 16 14 19 19 C 1.38322 * 119.92974 * 179.97438 * 18 17 16 20 20 F 1.35103 * 119.98570 * 179.97438 * 19 18 17 21 21 C 1.38512 * 120.03595 * 0.02562 * 19 18 17 22 22 C 1.38341 * 120.09740 * 359.97438 * 21 19 18 23 23 Cl 1.73599 * 119.96743 * 180.02562 * 22 21 19 24 24 C 1.38268 * 120.06788 * 359.97438 * 22 21 19 25 25 H 0.96998 * 119.99952 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99779 * 0.02562 * 9 7 2 27 27 H 1.08992 * 109.47342 * 60.00531 * 12 10 9 28 28 H 1.08998 * 109.47472 * 299.99506 * 12 10 9 29 29 H 0.97006 * 120.00194 * 359.97438 * 13 12 10 30 30 H 0.96993 * 119.99828 * 4.62225 * 16 14 13 31 31 H 1.07996 * 120.03725 * 359.69713 * 18 17 16 32 32 H 1.07998 * 119.95376 * 179.97438 * 21 19 18 33 33 H 1.07997 * 120.01406 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3705 -0.0011 13 7 6.0490 -3.7518 -0.0017 14 6 7.3741 -3.9981 -0.0023 15 8 8.1642 -3.0739 -0.0028 16 7 7.8233 -5.2688 -0.0024 17 6 9.1955 -5.5258 0.0946 18 6 9.6469 -6.6383 0.7921 19 6 11.0038 -6.8902 0.8860 20 9 11.4443 -7.9721 1.5648 21 6 11.9112 -6.0334 0.2852 22 6 11.4629 -4.9246 -0.4100 23 17 12.6032 -3.8533 -1.1622 24 6 10.1075 -4.6694 -0.5074 25 1 -0.4850 0.8400 -0.0004 26 1 3.8648 -0.3633 -0.0007 27 1 5.9240 -1.8568 0.8889 28 1 5.9241 -1.8568 -0.8911 29 1 5.4186 -4.4891 -0.0016 30 1 7.1955 -6.0051 -0.0696 31 1 8.9397 -7.3037 1.2647 32 1 12.9703 -6.2312 0.3597 33 1 9.7584 -3.8038 -1.0507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350187188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:32 Heat of formation + Delta-G solvation = -103.593008 kcal Electronic energy + Delta-G solvation = -22299.382325 eV Core-core repulsion = 18300.015361 eV Total energy + Delta-G solvation = -3999.366964 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.057 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.01627 -41.89820 -40.49399 -39.63176 -37.63635 -36.32087 -35.78921 -35.41853 -33.82659 -31.60826 -31.03026 -29.10852 -26.30866 -24.21967 -23.95620 -22.04422 -21.47588 -20.63084 -19.82573 -19.34627 -17.68949 -17.61097 -17.38607 -17.15798 -16.89040 -16.70552 -16.59996 -16.02829 -15.85081 -15.73177 -15.36921 -14.92158 -14.54611 -14.35480 -14.25019 -14.01693 -13.74348 -13.48280 -12.97322 -12.79294 -12.63614 -12.43694 -12.12869 -11.99770 -11.57052 -11.50290 -11.27481 -10.65497 -10.35421 -10.27267 -9.82536 -9.37107 -8.44884 -6.06923 -0.14503 -0.05095 0.90736 1.30757 1.33668 1.35242 1.45394 1.78110 1.86313 2.21335 2.40288 2.71023 3.06063 3.11756 3.19040 3.82404 3.91809 3.94925 3.98396 4.07496 4.35480 4.44100 4.46032 4.81593 4.97515 5.02729 5.17957 5.20677 5.48641 5.68236 5.75529 5.89121 6.49079 6.77698 6.79976 7.25786 7.32565 7.78762 8.71446 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.024326 B = 0.002427 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.752558 B =11532.445806 C =12494.284165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.330 4.330 8 H 0.064 0.936 9 N -0.578 5.578 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.137 3.863 13 N -0.716 5.716 14 C 0.709 3.291 15 O -0.601 6.601 16 N -0.670 5.670 17 C 0.204 3.796 18 C -0.169 4.169 19 C 0.130 3.870 20 F -0.131 7.131 21 C -0.161 4.161 22 C 0.004 3.996 23 Cl -0.053 7.053 24 C -0.136 4.136 25 H 0.281 0.719 26 H 0.392 0.608 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.414 0.586 30 H 0.429 0.571 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.372 -9.953 -0.062 27.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.459 4.459 8 H 0.082 0.918 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.500 6.500 12 C 0.009 3.991 13 N -0.373 5.373 14 C 0.409 3.591 15 O -0.481 6.481 16 N -0.319 5.319 17 C 0.107 3.893 18 C -0.190 4.190 19 C 0.110 3.890 20 F -0.109 7.109 21 C -0.181 4.181 22 C -0.023 4.023 23 Cl -0.023 7.023 24 C -0.157 4.157 25 H 0.090 0.910 26 H 0.228 0.772 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.252 0.748 30 H 0.269 0.731 31 H 0.187 0.813 32 H 0.181 0.819 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 25.460 -9.601 -0.096 27.210 hybrid contribution -0.760 0.279 -0.005 0.810 sum 24.700 -9.322 -0.101 26.400 Atomic orbital electron populations 1.69782 1.08071 1.29441 1.49328 1.26069 0.96410 1.02621 0.95750 0.85452 0.79638 0.77035 0.80051 1.18123 1.20066 1.15387 1.19020 0.80994 0.95225 1.50689 0.91789 1.41917 1.06100 1.07505 1.66241 1.20492 0.90053 0.83844 0.82314 1.90532 1.70801 1.32275 1.56416 1.20773 0.89232 0.83612 1.05511 1.44665 1.05109 1.09375 1.78151 1.15776 0.82405 0.83206 0.77725 1.90929 1.55096 1.43829 1.58204 1.42315 1.05903 1.07399 1.76285 1.16943 0.82566 0.94653 0.95136 1.21037 0.95120 1.00568 1.02326 1.17013 0.91659 0.85303 0.95058 1.91546 1.89981 1.51966 1.77408 1.21081 1.01926 0.94393 1.00735 1.20368 0.90141 0.93181 0.98647 1.98392 1.59566 1.64010 1.80379 1.21256 0.90964 1.01961 1.01566 0.90960 0.77170 0.87614 0.87397 0.74781 0.73145 0.81303 0.81902 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.55 13.96 21.66 0.30 -53.24 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 0.96 37.05 27.74 68.60 1.90 38.96 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 7 C -0.33 -18.18 10.16 84.04 0.85 -17.33 16 8 H 0.06 4.18 7.39 -2.91 -0.02 4.15 16 9 N -0.58 -25.28 5.09 -306.99 -1.56 -26.84 16 10 C 0.45 18.10 7.85 87.66 0.69 18.79 16 11 O -0.61 -29.78 15.24 -3.05 -0.05 -29.83 16 12 C 0.14 4.00 6.15 85.63 0.53 4.52 16 13 N -0.72 -18.80 5.53 -482.30 -2.67 -21.47 16 14 C 0.71 17.82 8.41 179.05 1.51 19.33 16 15 O -0.60 -18.53 13.78 -3.98 -0.05 -18.58 16 16 N -0.67 -12.12 5.34 -317.21 -1.69 -13.81 16 17 C 0.20 3.80 6.30 38.14 0.24 4.04 16 18 C -0.17 -2.49 9.94 22.44 0.22 -2.26 16 19 C 0.13 2.03 7.30 22.36 0.16 2.19 16 20 F -0.13 -2.10 17.27 44.97 0.78 -1.32 16 21 C -0.16 -2.52 9.81 22.36 0.22 -2.30 16 22 C 0.00 0.08 6.32 22.30 0.14 0.22 16 23 Cl -0.05 -0.96 28.95 -2.72 -0.08 -1.03 16 24 C -0.14 -2.92 8.48 22.42 0.19 -2.73 16 25 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 26 H 0.39 14.30 5.76 -92.71 -0.53 13.77 16 27 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.41 10.66 7.46 -92.70 -0.69 9.97 16 30 H 0.43 5.05 8.84 -92.71 -0.82 4.23 16 31 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 32 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.14 3.62 6.22 -2.91 -0.02 3.61 16 Total: -1.00 -70.62 316.21 1.22 -69.41 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -0.88 Total: 33.28 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 5.22 Total: 24.49 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -5.62 Total: -115.37 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -0.10 Total: -48.41 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.78 Total: -1.32 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 1.90 Total: 38.96 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.03 kcal Total: -70.62 1.22 -69.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350187188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.188 kcal (2) G-P(sol) polarization free energy of solvation -70.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds