Wall clock time and date at job start Tue Mar 31 2020 11:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86795 * 119.99846 * 2 1 4 4 H 1.48500 * 109.47212 * 270.00137 * 3 2 1 5 5 H 1.48498 * 109.47486 * 29.99954 * 3 2 1 6 6 H 1.48494 * 109.47377 * 150.00366 * 3 2 1 7 7 C 1.38952 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99714 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99786 * 179.97438 * 7 2 1 10 10 C 1.34774 * 119.99682 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00445 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99866 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47185 * 179.97438 * 12 10 9 14 14 C 1.34782 * 119.99994 * 179.97438 * 13 12 10 15 15 O 1.21586 * 119.99821 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99957 * 179.97438 * 14 13 12 17 17 C 1.39998 * 119.99781 * 185.62577 * 16 14 13 18 18 C 1.38868 * 120.06239 * 24.80671 * 17 16 14 19 19 C 1.38126 * 119.99191 * 179.74431 * 18 17 16 20 20 C 1.38269 * 120.11093 * 0.52491 * 19 18 17 21 21 C 1.38480 * 120.12069 * 359.72733 * 20 19 18 22 22 F 1.35099 * 119.99284 * 179.97438 * 21 20 19 23 23 C 1.38435 * 120.00963 * 0.02562 * 21 20 19 24 24 Cl 1.73606 * 120.05830 * 179.97438 * 23 21 20 25 25 H 0.97000 * 120.00510 * 359.97438 * 1 2 3 26 26 H 0.96995 * 119.99930 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47722 * 59.99076 * 12 10 9 28 28 H 1.09003 * 109.46660 * 299.99389 * 12 10 9 29 29 H 0.96997 * 120.00016 * 359.97438 * 13 12 10 30 30 H 0.96998 * 119.99772 * 5.35589 * 16 14 13 31 31 H 1.07994 * 120.00566 * 359.96846 * 18 17 16 32 32 H 1.07997 * 119.94685 * 180.22897 * 19 18 17 33 33 H 1.08001 * 119.94372 * 179.74482 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1386 -0.0014 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0021 11 8 3.4473 -3.4209 -0.0021 12 6 5.5607 -2.3705 -0.0021 13 7 6.0491 -3.7517 -0.0027 14 6 7.3742 -3.9979 -0.0034 15 8 8.1642 -3.0737 -0.0039 16 7 7.8235 -5.2686 -0.0034 17 6 9.1944 -5.5263 0.1148 18 6 10.0262 -4.5990 0.7286 19 6 11.3777 -4.8570 0.8492 20 6 11.9066 -6.0330 0.3499 21 6 11.0823 -6.9586 -0.2678 22 9 11.6019 -8.1065 -0.7551 23 6 9.7262 -6.7073 -0.3867 24 17 8.6918 -7.8666 -1.1614 25 1 -0.4851 0.8400 0.0004 26 1 3.8648 -0.3633 -0.0014 27 1 5.9241 -1.8573 0.8882 28 1 5.9240 -1.8559 -0.8917 29 1 5.4188 -4.4889 -0.0027 30 1 7.1965 -6.0046 -0.0814 31 1 9.6157 -3.6777 1.1149 32 1 12.0233 -4.1370 1.3299 33 1 12.9645 -6.2301 0.4419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352972309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:35 Heat of formation + Delta-G solvation = -100.466277 kcal Electronic energy + Delta-G solvation = -22518.043037 eV Core-core repulsion = 18518.811658 eV Total energy + Delta-G solvation = -3999.231379 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.057 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.03321 -41.97407 -40.50056 -39.58640 -37.66518 -36.35200 -35.94999 -35.45345 -33.83299 -31.53885 -30.96091 -29.08550 -26.31191 -24.29158 -23.92262 -22.03547 -21.48676 -20.63118 -19.86343 -19.32917 -17.86607 -17.72897 -17.38505 -17.11614 -16.88437 -16.78822 -16.60967 -16.02460 -15.80215 -15.66941 -15.26388 -14.92421 -14.51016 -14.34853 -14.16830 -14.02297 -13.73893 -13.42659 -12.96729 -12.79949 -12.64871 -12.43700 -12.14864 -11.99293 -11.73585 -11.57249 -11.31026 -10.66387 -10.36484 -10.28266 -9.79500 -9.25785 -8.44931 -6.07311 -0.11806 0.00442 0.84550 1.24492 1.32560 1.35558 1.45805 1.77366 1.84924 2.21655 2.49402 2.66167 2.97653 3.11562 3.13892 3.71785 3.78840 3.96747 4.12055 4.26931 4.40434 4.43779 4.62875 4.85532 4.99760 5.11532 5.21852 5.35140 5.48306 5.66533 5.74720 5.88683 6.48892 6.67596 6.79037 7.19418 7.30373 7.78743 8.71477 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.002516 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.689649 B =11125.763189 C =11905.838904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.960 3.040 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.229 1.229 7 C -0.331 4.331 8 H 0.062 0.938 9 N -0.576 5.576 10 C 0.444 3.556 11 O -0.616 6.616 12 C 0.137 3.863 13 N -0.717 5.717 14 C 0.713 3.287 15 O -0.592 6.592 16 N -0.673 5.673 17 C 0.199 3.801 18 C -0.144 4.144 19 C -0.050 4.050 20 C -0.156 4.156 21 C 0.118 3.882 22 F -0.131 7.131 23 C -0.128 4.128 24 Cl -0.051 7.051 25 H 0.281 0.719 26 H 0.393 0.607 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.412 0.588 30 H 0.419 0.581 31 H 0.154 0.846 32 H 0.176 0.824 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.510 -8.311 1.656 27.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.209 4.209 3 Si 0.780 3.220 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.152 1.152 7 C -0.460 4.460 8 H 0.080 0.920 9 N -0.216 5.216 10 C 0.232 3.768 11 O -0.502 6.502 12 C 0.009 3.991 13 N -0.374 5.374 14 C 0.413 3.587 15 O -0.471 6.471 16 N -0.320 5.320 17 C 0.101 3.899 18 C -0.165 4.165 19 C -0.069 4.069 20 C -0.176 4.176 21 C 0.098 3.902 22 F -0.110 7.110 23 C -0.159 4.159 24 Cl -0.022 7.022 25 H 0.091 0.909 26 H 0.229 0.771 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.250 0.750 30 H 0.257 0.743 31 H 0.171 0.829 32 H 0.194 0.806 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 26.387 -8.161 1.568 27.665 hybrid contribution -1.249 -0.309 -0.388 1.344 sum 25.138 -8.470 1.180 26.553 Atomic orbital electron populations 1.69783 1.08133 1.29479 1.49275 1.26095 0.96426 1.02709 0.95687 0.85432 0.79692 0.76864 0.80051 1.18165 1.20042 1.15167 1.19015 0.81027 0.95209 1.50778 0.91952 1.41893 1.06062 1.07471 1.66202 1.20516 0.90114 0.83851 0.82366 1.90538 1.70839 1.32369 1.56444 1.20812 0.89205 0.83269 1.05784 1.44736 1.05106 1.09586 1.77979 1.15657 0.82500 0.82779 0.77764 1.90874 1.54780 1.43447 1.57968 1.42518 1.06339 1.07686 1.75447 1.17163 0.83338 0.93127 0.96233 1.21670 0.94356 1.00456 1.00014 1.21395 0.94001 0.96047 0.95419 1.21466 1.01783 0.93635 1.00669 1.17313 0.89313 0.84476 0.99119 1.91529 1.86587 1.47151 1.85717 1.20697 0.91361 0.95193 1.08632 1.98381 1.66501 1.57835 1.79497 0.90946 0.77091 0.87031 0.87301 0.75035 0.74280 0.82875 0.80640 0.80846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 13.96 21.66 0.30 -53.47 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 0.96 36.91 27.74 68.60 1.90 38.81 16 4 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 5 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 7 C -0.33 -18.34 10.16 84.04 0.85 -17.49 16 8 H 0.06 4.11 7.39 -2.91 -0.02 4.09 16 9 N -0.58 -25.29 5.09 -307.00 -1.56 -26.85 16 10 C 0.44 18.25 7.85 87.66 0.69 18.94 16 11 O -0.62 -30.50 15.24 -3.04 -0.05 -30.54 16 12 C 0.14 4.02 6.15 85.63 0.53 4.55 16 13 N -0.72 -19.87 5.53 -482.29 -2.67 -22.54 16 14 C 0.71 18.85 8.37 179.05 1.50 20.35 16 15 O -0.59 -17.67 13.51 -3.99 -0.05 -17.72 16 16 N -0.67 -14.90 5.19 -317.11 -1.65 -16.55 16 17 C 0.20 4.26 6.43 38.15 0.25 4.50 16 18 C -0.14 -2.77 8.72 22.39 0.20 -2.58 16 19 C -0.05 -0.64 10.04 22.25 0.22 -0.41 16 20 C -0.16 -1.98 10.02 22.33 0.22 -1.75 16 21 C 0.12 2.14 7.27 22.37 0.16 2.30 16 22 F -0.13 -2.55 16.84 44.97 0.76 -1.79 16 23 C -0.13 -2.61 6.34 22.48 0.14 -2.47 16 24 Cl -0.05 -1.03 27.45 -2.72 -0.07 -1.11 16 25 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.39 14.24 5.76 -92.71 -0.53 13.71 16 27 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.41 11.63 7.46 -92.71 -0.69 10.94 16 30 H 0.42 8.06 7.79 -92.71 -0.72 7.34 16 31 H 0.15 3.37 5.78 -2.91 -0.02 3.35 16 32 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 33 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -71.18 313.02 1.36 -69.82 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: -0.78 Total: 36.02 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: 5.23 Total: 25.92 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -5.58 Total: -119.40 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -0.10 Total: -48.27 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.76 Total: -1.79 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 1.90 Total: 38.81 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.07 Total: -1.11 kcal Total: -71.18 1.36 -69.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352972309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.642 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds