Wall clock time and date at job start Tue Mar 31 2020 11:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99917 * 2 1 4 4 H 1.48506 * 109.46860 * 269.99896 * 3 2 1 5 5 H 1.48497 * 109.47039 * 29.99738 * 3 2 1 6 6 H 1.48503 * 109.46892 * 150.00052 * 3 2 1 7 7 C 1.38818 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99806 * 160.51194 * 7 2 1 9 9 N 1.36932 * 119.99753 * 340.51465 * 7 2 1 10 10 C 1.46499 * 120.00186 * 320.29342 * 9 7 2 11 11 C 1.53002 * 109.47344 * 270.27638 * 10 9 7 12 12 O 1.42900 * 109.46920 * 64.99687 * 11 10 9 13 13 C 1.35896 * 117.00298 * 179.97438 * 12 11 10 14 14 C 1.38721 * 120.03906 * 359.73186 * 13 12 11 15 15 C 1.38276 * 119.95671 * 179.74764 * 14 13 12 16 16 Cl 1.73601 * 119.97733 * 180.29377 * 15 14 13 17 17 C 1.38360 * 120.03769 * 0.54365 * 15 14 13 18 18 C 1.38366 * 120.08934 * 359.70817 * 17 15 14 19 19 Cl 1.73596 * 119.98003 * 179.97438 * 18 17 15 20 20 C 1.38267 * 120.04095 * 0.02562 * 18 17 15 21 21 C 1.46506 * 119.99919 * 140.57044 * 9 7 2 22 22 C 1.52999 * 117.49748 * 3.01297 * 21 9 7 23 23 C 1.53001 * 117.49896 * 294.39014 * 21 9 7 24 24 H 0.96999 * 120.00417 * 355.02553 * 1 2 3 25 25 H 1.09000 * 109.47587 * 30.27818 * 10 9 7 26 26 H 1.09000 * 109.47106 * 150.28118 * 10 9 7 27 27 H 1.08990 * 109.47183 * 184.99893 * 11 10 9 28 28 H 1.09002 * 109.47001 * 305.00389 * 11 10 9 29 29 H 1.07999 * 120.01947 * 0.02562 * 14 13 12 30 30 H 1.08002 * 119.95491 * 179.72515 * 17 15 14 31 31 H 1.07993 * 120.02188 * 179.97438 * 20 18 17 32 32 H 1.09004 * 115.54856 * 148.71686 * 21 9 7 33 33 H 1.09003 * 117.50043 * 359.97438 * 22 21 9 34 34 H 1.09001 * 117.49916 * 145.01627 * 22 21 9 35 35 H 1.08993 * 117.49522 * 214.97412 * 23 21 9 36 36 H 1.08997 * 117.49643 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0438 -1.2291 -0.3115 9 7 1.3844 -2.3539 0.3966 10 6 0.4626 -2.3324 1.5351 11 6 1.2386 -2.6066 2.8249 12 8 2.1588 -1.5395 3.0632 13 6 2.9314 -1.6283 4.1776 14 6 2.8024 -2.7174 5.0271 15 6 3.5931 -2.8086 6.1578 16 17 3.4375 -4.1750 7.2172 17 6 4.5046 -1.8089 6.4480 18 6 4.6311 -0.7193 5.6046 19 17 5.7751 0.5337 5.9718 20 6 3.8461 -0.6273 4.4701 21 6 1.6412 -3.6089 -0.3143 22 6 2.6714 -3.5821 -1.4451 23 6 1.1813 -3.7027 -1.7706 24 1 -0.4851 0.8368 0.0728 25 1 -0.0136 -1.3540 1.5987 26 1 -0.2998 -3.0995 1.3998 27 1 0.5418 -2.6787 3.6598 28 1 1.7866 -3.5437 2.7270 29 1 2.0880 -3.4957 4.8031 30 1 5.1184 -1.8793 7.3338 31 1 3.9447 0.2235 3.8124 32 1 1.5817 -4.5131 0.2915 33 1 3.1579 -2.6307 -1.6604 34 1 3.2902 -4.4688 -1.5833 35 1 0.8198 -4.6687 -2.1229 36 1 0.6874 -2.8309 -2.1995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357634230.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:03 Heat of formation + Delta-G solvation = 10.909046 kcal Electronic energy + Delta-G solvation = -21618.143113 eV Core-core repulsion = 18155.618049 eV Total energy + Delta-G solvation = -3462.525064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21302 -39.14232 -38.40462 -37.83151 -37.03464 -35.27778 -33.05794 -31.83160 -31.06866 -29.58979 -26.35506 -24.46636 -23.72677 -23.02108 -22.58463 -21.42337 -19.50551 -18.33856 -17.46465 -17.18621 -17.01839 -16.83626 -16.36482 -16.17667 -15.60276 -15.45229 -14.81048 -14.67710 -14.25953 -13.78197 -13.57323 -13.40621 -13.27157 -13.15312 -12.74360 -12.69280 -12.51577 -12.28266 -12.19445 -12.01760 -12.00008 -11.93657 -11.58052 -11.38695 -11.31902 -10.86805 -10.42628 -9.88705 -9.32169 -8.45211 -7.75135 -5.43232 -0.15562 0.11843 0.65780 1.16206 1.42016 1.46586 1.54872 2.36169 2.39701 2.52883 3.21915 3.46243 3.50680 3.83018 3.89756 3.92281 4.01146 4.24391 4.32723 4.37324 4.43406 4.50482 4.61616 4.69072 4.88397 4.93023 4.97405 4.98073 5.05082 5.09725 5.31065 5.39741 5.58819 5.68000 5.77457 6.45122 6.58082 7.21391 7.88513 8.38440 9.15747 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.004633 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.233824 B = 6041.841084 C = 7530.758712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.023 4.023 3 Si 0.935 3.065 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.234 4.234 8 H 0.047 0.953 9 N -0.563 5.563 10 C 0.144 3.856 11 C 0.049 3.951 12 O -0.298 6.298 13 C 0.153 3.847 14 C -0.202 4.202 15 C 0.018 3.982 16 Cl -0.044 7.044 17 C -0.147 4.147 18 C 0.016 3.984 19 Cl -0.048 7.048 20 C -0.164 4.164 21 C 0.102 3.898 22 C -0.185 4.185 23 C -0.215 4.215 24 H 0.248 0.752 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.156 0.844 30 H 0.164 0.836 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.647 -7.681 13.692 17.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.764 3.236 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.365 4.365 8 H 0.065 0.935 9 N -0.280 5.280 10 C 0.018 3.982 11 C -0.028 4.028 12 O -0.210 6.210 13 C 0.105 3.895 14 C -0.221 4.221 15 C -0.009 4.009 16 Cl -0.015 7.015 17 C -0.167 4.167 18 C -0.011 4.011 19 Cl -0.018 7.018 20 C -0.184 4.184 21 C -0.006 4.006 22 C -0.224 4.224 23 C -0.256 4.256 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.173 0.827 30 H 0.182 0.818 31 H 0.149 0.851 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.593 -7.392 13.613 16.835 hybrid contribution 0.211 1.158 -0.240 1.201 sum 6.804 -6.234 13.373 16.247 Atomic orbital electron populations 1.70116 1.06354 1.26052 1.53369 1.25584 0.95399 1.00623 1.00367 0.85796 0.78969 0.81535 0.77265 1.21615 1.21847 1.19868 1.18855 0.92349 0.86017 1.39248 0.93502 1.43453 1.50448 1.03617 1.30475 1.20985 0.90997 1.02735 0.83506 1.23837 0.90794 0.88330 0.99856 1.86453 1.49549 1.46918 1.38107 1.19017 0.90728 0.93068 0.86689 1.21325 1.04579 1.00370 0.95873 1.20439 0.97330 0.90568 0.92602 1.98380 1.97071 1.41863 1.64201 1.20877 1.01339 0.92456 1.01979 1.20317 0.93887 0.91719 0.95144 1.98378 1.58146 1.51278 1.94043 1.20401 0.98248 1.00827 0.98885 1.21583 1.01641 0.90330 0.86998 1.23002 0.92136 1.02039 1.05180 1.23246 0.97090 1.00948 1.04302 0.94240 0.91248 0.91115 0.90831 0.91778 0.82692 0.81820 0.85104 0.86560 0.91156 0.87318 0.87998 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.05 11.50 21.65 0.25 -51.80 16 2 C -0.02 -1.23 4.99 84.86 0.42 -0.80 16 3 Si 0.94 45.07 29.60 68.60 2.03 47.10 16 4 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.23 -12.33 7.96 84.04 0.67 -11.66 16 8 H 0.05 2.57 6.75 -2.91 -0.02 2.55 16 9 N -0.56 -26.03 2.73 -678.02 -1.85 -27.88 16 10 C 0.14 6.05 5.76 86.38 0.50 6.55 16 11 C 0.05 1.66 5.08 71.98 0.37 2.03 16 12 O -0.30 -11.83 9.60 -92.38 -0.89 -12.72 16 13 C 0.15 5.05 6.69 22.50 0.15 5.20 16 14 C -0.20 -5.41 8.82 22.39 0.20 -5.22 16 15 C 0.02 0.42 6.32 22.31 0.14 0.56 16 16 Cl -0.04 -0.87 28.95 -2.72 -0.08 -0.95 16 17 C -0.15 -3.35 9.61 22.33 0.21 -3.13 16 18 C 0.02 0.43 6.32 22.31 0.14 0.57 16 19 Cl -0.05 -1.12 28.95 -2.72 -0.08 -1.20 16 20 C -0.16 -5.22 9.77 22.39 0.22 -5.00 16 21 C 0.10 4.00 6.56 44.99 0.30 4.29 16 22 C -0.19 -6.87 9.80 30.59 0.30 -6.57 16 23 C -0.22 -8.23 10.36 30.60 0.32 -7.91 16 24 H 0.25 13.86 8.32 -92.71 -0.77 13.09 16 25 H 0.07 3.49 5.60 -2.39 -0.01 3.47 16 26 H 0.07 2.66 8.07 -2.39 -0.02 2.64 16 27 H 0.07 2.09 7.65 -2.39 -0.02 2.07 16 28 H 0.06 1.98 7.67 -2.39 -0.02 1.96 16 29 H 0.16 3.67 6.30 -2.91 -0.02 3.66 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 32 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 33 H 0.07 3.00 6.47 -2.39 -0.02 2.99 16 34 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -59.33 336.19 4.42 -54.91 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 1.10 Total: 13.63 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 3.93 Total: -21.10 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -1.60 Total: -79.68 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.89 Total: -12.72 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.16 Total: -2.14 kcal Total: -59.33 4.42 -54.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357634230.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.822 kcal (2) G-P(sol) polarization free energy of solvation -59.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds