Wall clock time and date at job start Tue Mar 31 2020 11:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99946 * 2 1 4 4 H 1.48502 * 109.47396 * 270.00363 * 3 2 1 5 5 H 1.48505 * 109.46927 * 30.00076 * 3 2 1 6 6 H 1.48500 * 109.47151 * 149.99999 * 3 2 1 7 7 C 1.37871 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46905 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46955 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99978 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00270 * 179.97438 * 11 10 9 14 14 C 1.46491 * 120.00002 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47291 * 180.02562 * 14 13 11 16 16 C 1.50693 * 109.47528 * 180.02562 * 15 14 13 17 17 C 1.38249 * 119.99590 * 265.25203 * 16 15 14 18 18 C 1.38191 * 120.03041 * 180.29819 * 17 16 15 19 19 C 1.38386 * 120.00945 * 359.72592 * 18 17 16 20 20 Cl 1.73606 * 120.00614 * 180.02562 * 19 18 17 21 21 C 1.38306 * 119.99041 * 0.02562 * 19 18 17 22 22 C 1.38337 * 119.99277 * 84.99886 * 16 15 14 23 23 Cl 1.73599 * 120.00976 * 359.97438 * 22 16 15 24 24 H 0.96994 * 120.00263 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47286 * 59.99894 * 9 7 2 26 26 H 1.08995 * 109.46976 * 299.99511 * 9 7 2 27 27 H 1.08998 * 109.46951 * 60.00036 * 10 9 7 28 28 H 1.08995 * 109.47188 * 299.99728 * 10 9 7 29 29 H 0.96998 * 119.99497 * 0.02562 * 13 11 10 30 30 H 1.09000 * 109.47942 * 60.00316 * 14 13 11 31 31 H 1.09003 * 109.47404 * 299.99603 * 14 13 11 32 32 H 1.08997 * 109.47210 * 59.99350 * 15 14 13 33 33 H 1.09009 * 109.46873 * 300.00172 * 15 14 13 34 34 H 1.08002 * 119.98459 * 0.02562 * 17 16 15 35 35 H 1.07992 * 120.00056 * 179.70138 * 18 17 16 36 36 H 1.08002 * 120.01552 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4920 -4.9671 0.0012 12 8 0.2791 -4.9672 0.0011 13 7 2.1659 -6.1344 0.0008 14 6 1.4334 -7.4030 0.0008 15 6 2.4276 -8.5660 0.0009 16 6 1.6742 -9.8710 0.0003 17 6 1.4140 -10.5194 1.1933 18 6 0.7285 -11.7193 1.1931 19 6 0.2971 -12.2698 -0.0010 20 17 -0.5646 -13.7769 -0.0011 21 6 0.5526 -11.6191 -1.1944 22 6 1.2384 -10.4175 -1.1935 23 17 1.5588 -9.5996 -2.6909 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 3.1359 -6.1343 0.0004 30 1 0.8064 -7.4608 -0.8890 31 1 0.8071 -7.4610 0.8910 32 1 3.0543 -8.5082 0.8908 33 1 3.0543 -8.5083 -0.8891 34 1 1.7504 -10.0902 2.1255 35 1 0.5297 -12.2278 2.1249 36 1 0.2157 -12.0481 -2.1266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359836768.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:18 Heat of formation + Delta-G solvation = -71.032269 kcal Electronic energy + Delta-G solvation = -20107.861750 eV Core-core repulsion = 16641.783444 eV Total energy + Delta-G solvation = -3466.078306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89805 -40.41942 -37.87035 -37.37120 -36.47700 -35.52544 -33.74334 -32.84463 -31.96444 -29.62416 -27.57131 -24.94236 -24.04287 -23.26729 -22.30479 -21.11363 -18.82313 -18.36162 -17.40836 -17.35676 -17.10083 -16.55987 -16.47961 -16.23579 -15.23964 -15.17278 -15.07693 -14.68400 -14.60233 -14.13701 -14.02303 -13.47475 -13.22480 -13.07745 -13.04908 -12.83637 -12.79889 -12.45512 -12.23494 -12.01800 -11.98100 -11.89257 -11.86745 -11.61813 -11.28969 -10.73512 -10.55927 -10.05399 -10.01918 -9.66745 -8.16765 -6.30816 -0.13521 0.03297 0.79994 1.23941 1.43035 1.45850 1.56756 1.74821 2.20239 2.40375 2.48321 3.16158 3.61048 3.66908 3.89748 3.96005 4.04539 4.16803 4.24282 4.27581 4.54218 4.58820 4.60079 4.66581 4.78560 4.92670 5.01131 5.07615 5.14118 5.29135 5.46821 5.52743 5.54348 5.65421 5.87345 6.19093 6.65318 6.88178 7.38251 7.40228 8.95932 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.032092 B = 0.002077 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.291593 B =13477.607171 C =13705.446325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.510 3.490 12 O -0.592 6.592 13 N -0.716 5.716 14 C 0.126 3.874 15 C -0.086 4.086 16 C -0.074 4.074 17 C -0.084 4.084 18 C -0.103 4.103 19 C -0.035 4.035 20 Cl -0.060 7.060 21 C -0.110 4.110 22 C -0.034 4.034 23 Cl -0.061 7.061 24 H 0.262 0.738 25 H -0.020 1.020 26 H -0.018 1.018 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.419 0.581 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.170 0.830 35 H 0.162 0.838 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.454 -29.807 1.182 31.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.178 1.178 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.299 3.701 12 O -0.471 6.471 13 N -0.370 5.370 14 C 0.002 3.998 15 C -0.123 4.123 16 C -0.076 4.076 17 C -0.103 4.103 18 C -0.121 4.121 19 C -0.062 4.062 20 Cl -0.031 7.031 21 C -0.129 4.129 22 C -0.061 4.061 23 Cl -0.032 7.032 24 H 0.071 0.929 25 H -0.002 1.002 26 H 0.001 0.999 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.256 0.744 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.187 0.813 35 H 0.179 0.821 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.410 -29.786 1.042 30.712 hybrid contribution -0.103 0.785 -0.459 0.915 sum 7.307 -29.001 0.582 29.913 Atomic orbital electron populations 1.70184 1.08337 1.27771 1.51576 1.26166 0.95742 1.04033 0.94729 0.85309 0.78698 0.77676 0.78476 1.19795 1.21274 1.17760 1.21733 0.94054 0.91577 1.50592 0.90449 1.18700 0.93783 0.92612 0.94619 1.21638 0.99264 0.89988 1.04997 1.21350 0.87782 0.86858 0.74154 1.90664 1.16889 1.88445 1.51149 1.45828 1.11076 1.04469 1.75653 1.21216 0.94893 0.82311 1.01378 1.20810 0.96896 0.88236 1.06350 1.19818 0.98903 0.97058 0.91776 1.21362 0.96895 0.93859 0.98141 1.21469 0.97062 0.95940 0.97657 1.20912 1.00187 0.90220 0.94911 1.98393 1.75259 1.30524 1.98903 1.21006 0.99187 0.93945 0.98812 1.20844 1.02453 0.94956 0.87853 1.98404 1.94118 1.78460 1.32189 0.92905 1.00178 0.99938 0.87439 0.87729 0.74355 0.93497 0.92407 0.86582 0.88813 0.81279 0.82087 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.94 13.29 21.45 0.28 -59.66 16 2 C -0.01 -0.55 5.46 84.65 0.46 -0.09 16 3 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.54 -30.81 9.11 25.60 0.23 -30.57 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 9 C 0.04 2.26 4.26 29.85 0.13 2.39 16 10 C -0.12 -4.69 5.64 29.85 0.17 -4.52 16 11 C 0.51 19.42 7.83 87.66 0.69 20.11 16 12 O -0.59 -29.29 15.98 -3.04 -0.05 -29.34 16 13 N -0.72 -17.99 5.56 -463.07 -2.57 -20.57 16 14 C 0.13 2.87 5.66 86.38 0.49 3.35 16 15 C -0.09 -1.17 4.97 29.85 0.15 -1.02 16 16 C -0.07 -1.09 5.14 -19.84 -0.10 -1.19 16 17 C -0.08 -0.95 9.68 22.26 0.22 -0.73 16 18 C -0.10 -1.18 9.83 22.29 0.22 -0.96 16 19 C -0.04 -0.51 6.32 22.32 0.14 -0.37 16 20 Cl -0.06 -0.83 28.96 -2.72 -0.08 -0.91 16 21 C -0.11 -1.74 9.62 22.32 0.21 -1.53 16 22 C -0.03 -0.58 6.31 22.32 0.14 -0.44 16 23 Cl -0.06 -1.15 27.16 -2.72 -0.07 -1.22 16 24 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 25 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 26 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 27 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 28 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 29 H 0.42 7.01 8.47 -92.71 -0.79 6.23 16 30 H 0.05 1.29 7.90 -2.39 -0.02 1.28 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.12 0.97 8.05 -2.39 -0.02 0.95 16 33 H 0.09 1.23 7.12 -2.38 -0.02 1.21 16 34 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 36 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -78.51 344.01 3.00 -75.51 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.32 Total: 5.43 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 3.14 Total: -15.58 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.29 Total: -80.23 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.05 Total: -29.34 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.15 Total: -2.13 kcal Total: -78.51 3.00 -75.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359836768.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.474 kcal (2) G-P(sol) polarization free energy of solvation -78.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds