Wall clock time and date at job start Tue Mar 31 2020 10:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86809 * 119.99585 * 2 1 4 4 H 1.48497 * 109.47104 * 269.99822 * 3 2 1 5 5 H 1.48502 * 109.46943 * 29.99961 * 3 2 1 6 6 H 1.48497 * 109.46910 * 149.99761 * 3 2 1 7 7 C 1.38796 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99554 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00095 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09005 * 110.83264 * 34.30121 * 14 13 11 16 16 C 1.54710 * 110.94228 * 270.59144 * 14 13 11 17 17 O 1.43862 * 102.73557 * 267.11711 * 16 14 13 18 18 C 1.36151 * 109.24809 * 332.24760 * 17 16 14 19 19 C 1.39266 * 129.84724 * 198.41082 * 18 17 16 20 20 C 1.38167 * 120.27307 * 180.98801 * 19 18 17 21 21 F 1.35097 * 119.83829 * 179.97438 * 20 19 18 22 22 C 1.38471 * 120.32274 * 359.97438 * 20 19 18 23 23 C 1.38536 * 119.71391 * 359.83939 * 22 20 19 24 24 F 1.35102 * 120.02318 * 179.97438 * 23 22 20 25 25 C 1.37979 * 119.95857 * 359.97438 * 23 22 20 26 26 H 0.96998 * 120.00709 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 28 28 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 29 29 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 30 30 H 1.09002 * 110.74692 * 25.45088 * 16 14 13 31 31 H 1.09002 * 110.75098 * 148.80529 * 16 14 13 32 32 H 1.08000 * 119.86671 * 0.96979 * 19 18 17 33 33 H 1.08006 * 120.14298 * 179.85343 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2018 0.0012 10 6 4.0867 -2.9843 0.0025 11 6 5.5732 -3.2322 0.0026 12 8 6.3442 -2.2959 0.0024 13 7 6.0459 -4.4943 0.0092 14 6 7.4909 -4.7353 0.0154 15 1 8.0097 -3.9668 0.5885 16 6 8.0441 -4.8171 -1.4271 17 8 7.9918 -6.2272 -1.7074 18 6 8.1037 -6.9210 -0.5412 19 6 8.4447 -8.2539 -0.3251 20 6 8.4793 -8.7647 0.9582 21 9 8.8107 -10.0591 1.1577 22 6 8.1759 -7.9564 2.0408 23 6 7.8397 -6.6286 1.8335 24 9 7.5421 -5.8345 2.8852 25 6 7.8089 -6.1176 0.5522 26 1 -0.4851 0.8400 -0.0004 27 1 3.6442 -3.4320 -0.8874 28 1 3.6435 -3.4308 0.8926 29 1 5.4294 -5.2432 0.0097 30 1 7.4081 -4.2620 -2.1166 31 1 9.0706 -4.4528 -1.4684 32 1 8.6828 -8.8910 -1.1640 33 1 8.2016 -8.3594 3.0426 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374644013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:24 Heat of formation + Delta-G solvation = -124.487562 kcal Electronic energy + Delta-G solvation = -22833.233059 eV Core-core repulsion = 18815.083784 eV Total energy + Delta-G solvation = -4018.149275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.55138 -49.41042 -41.80752 -39.21286 -37.60050 -34.90359 -32.47550 -31.72635 -30.71627 -29.66274 -28.29516 -25.65567 -24.13567 -23.24594 -22.25516 -20.68370 -18.92960 -18.29941 -17.93124 -17.27644 -16.98051 -16.49655 -16.37557 -16.30278 -15.83833 -15.74721 -15.34683 -15.03791 -14.98046 -14.80936 -14.22346 -13.89602 -13.40989 -12.96221 -12.92406 -12.83357 -12.52521 -12.36560 -12.13645 -11.98758 -11.33538 -11.29432 -11.04190 -10.67193 -9.94923 -9.80729 -9.40257 -9.20899 -9.03653 -8.93754 -8.56330 -6.97126 -6.32213 -4.04907 0.28796 0.49433 2.46023 2.54413 2.75341 2.81717 3.24595 3.30468 3.40808 3.47056 3.57291 3.69813 3.83580 4.11172 4.29501 4.30581 4.43747 4.56989 4.65737 4.80550 5.03945 5.06773 5.14467 5.26077 5.32540 5.39328 5.46586 5.52024 5.68091 5.91691 5.94145 6.22037 6.44027 7.37864 7.90707 8.26792 8.38491 9.13587 10.77020 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.028356 B = 0.002808 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.225296 B = 9968.555354 C =10220.676967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.139 6.139 10 C -0.125 4.125 11 C 0.535 3.465 12 O -0.514 6.514 13 N -0.726 5.726 14 C 0.171 3.829 15 H 0.121 0.879 16 C 0.040 3.960 17 O -0.287 6.287 18 C 0.186 3.814 19 C -0.194 4.194 20 C 0.179 3.821 21 F -0.122 7.122 22 C -0.228 4.228 23 C 0.205 3.795 24 F -0.119 7.119 25 C -0.249 4.249 26 H 0.271 0.729 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.404 0.596 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.151 0.849 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.809 -18.271 0.555 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.087 5.913 10 C -0.275 4.275 11 C 0.322 3.678 12 O -0.388 6.388 13 N -0.380 5.380 14 C 0.065 3.935 15 H 0.139 0.861 16 C -0.036 4.036 17 O -0.200 6.200 18 C 0.139 3.861 19 C -0.213 4.213 20 C 0.159 3.841 21 F -0.100 7.100 22 C -0.247 4.247 23 C 0.184 3.816 24 F -0.097 7.097 25 C -0.251 4.251 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.239 0.761 30 H 0.140 0.860 31 H 0.115 0.885 32 H 0.169 0.831 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 19.880 -16.648 0.366 25.933 hybrid contribution -1.153 -0.715 0.340 1.399 sum 18.726 -17.363 0.706 25.547 Atomic orbital electron populations 1.69933 1.05926 1.27831 1.47911 1.24716 0.94453 0.98980 0.93146 0.86736 0.81891 0.83285 0.79937 1.19183 1.19898 1.15913 1.22302 0.88152 0.97580 1.58960 0.89337 1.84777 1.09465 0.99604 1.97452 1.23285 0.93379 1.04733 1.06102 1.20408 0.90883 0.81877 0.74648 1.90712 1.58685 1.41993 1.47434 1.46048 1.05746 1.08636 1.77599 1.20741 0.83883 0.93574 0.95269 0.86118 1.24536 1.03414 0.78543 0.97073 1.86952 1.86995 1.19393 1.26641 1.18822 0.90772 0.91668 0.84886 1.20046 1.10080 0.94266 0.96926 1.16653 0.96510 0.78686 0.92260 1.91571 1.89390 1.33376 1.95705 1.20916 1.10468 0.92587 1.00763 1.16366 0.95556 0.87593 0.82050 1.91601 1.89855 1.73021 1.55215 1.20773 1.12789 0.98542 0.93030 0.91882 0.88239 0.88212 0.76120 0.85996 0.88452 0.83100 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.34 13.97 55.49 0.78 -25.56 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.47 27.74 -169.99 -4.72 16.75 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 7 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 10 C -0.12 -2.30 6.16 36.01 0.22 -2.08 16 11 C 0.54 8.84 7.85 -10.98 -0.09 8.75 16 12 O -0.51 -10.18 15.55 5.55 0.09 -10.09 16 13 N -0.73 -8.82 5.17 -53.59 -0.28 -9.10 16 14 C 0.17 1.83 3.44 -67.72 -0.23 1.60 16 15 H 0.12 1.41 7.63 -51.93 -0.40 1.01 16 16 C 0.04 0.37 7.73 38.06 0.29 0.66 16 17 O -0.29 -2.79 11.11 -20.22 -0.22 -3.01 16 18 C 0.19 1.68 7.03 -38.97 -0.27 1.41 16 19 C -0.19 -1.49 10.04 -39.23 -0.39 -1.88 16 20 C 0.18 1.38 7.28 -39.52 -0.29 1.09 16 21 F -0.12 -0.97 17.26 2.25 0.04 -0.93 16 22 C -0.23 -1.78 10.02 -39.39 -0.39 -2.17 16 23 C 0.20 1.93 7.29 -39.57 -0.29 1.65 16 24 F -0.12 -1.32 17.27 2.25 0.04 -1.28 16 25 C -0.25 -2.39 5.79 -104.02 -0.60 -2.99 16 26 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 28 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 29 H 0.40 4.13 8.63 -40.82 -0.35 3.78 16 30 H 0.12 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 316.97 15.07 4.78 4.78 Total: -1.00 -32.55 316.97 -6.18 -38.74 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -2.86 Total: 0.94 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.83 Total: -5.81 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.50 Total: -34.66 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.14 Total: -13.11 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.08 Total: -2.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.72 Total: 16.75 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.55 -6.18 -38.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374644013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.752 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds