Wall clock time and date at job start Tue Mar 31 2020 10:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99845 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99838 * 3 2 1 7 7 C 1.38801 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99933 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99750 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.83828 * 322.72490 * 14 13 11 16 16 C 1.54710 * 110.94816 * 86.45062 * 14 13 11 17 17 O 1.43759 * 102.78933 * 92.78403 * 16 14 13 18 18 C 1.36135 * 109.29167 * 27.55657 * 17 16 14 19 19 C 1.39277 * 129.84316 * 161.45066 * 18 17 16 20 20 C 1.38161 * 120.27860 * 179.62191 * 19 18 17 21 21 F 1.35098 * 119.83678 * 180.02562 * 20 19 18 22 22 C 1.38480 * 120.32735 * 359.97438 * 20 19 18 23 23 C 1.38538 * 119.70733 * 0.19284 * 22 20 19 24 24 F 1.35100 * 120.01881 * 180.02562 * 23 22 20 25 25 C 1.37979 * 119.96065 * 359.97438 * 23 22 20 26 26 H 0.97001 * 120.00200 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47176 * 299.99944 * 10 9 7 28 28 H 1.08998 * 109.47231 * 59.99799 * 10 9 7 29 29 H 0.96997 * 120.00437 * 359.97438 * 13 11 10 30 30 H 1.08997 * 110.74973 * 211.10774 * 16 14 13 31 31 H 1.08999 * 110.74545 * 334.27872 * 16 14 13 32 32 H 1.08001 * 119.86267 * 359.58898 * 19 18 17 33 33 H 1.07995 * 120.14635 * 180.16982 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3430 0.0018 14 6 2.3303 -7.7150 0.0019 15 1 1.4349 -7.7937 0.6184 16 6 2.0532 -8.2020 -1.4402 17 8 3.2842 -8.8523 -1.7985 18 6 3.8907 -9.3188 -0.6726 19 6 4.8843 -10.2842 -0.5289 20 6 5.3688 -10.6040 0.7249 21 9 6.3330 -11.5414 0.8539 22 6 4.8718 -9.9675 1.8498 23 6 3.8810 -9.0087 1.7147 24 9 3.3919 -8.3834 2.8079 25 6 3.3947 -8.6919 0.4629 26 1 -0.4850 -0.8400 -0.0004 27 1 3.1243 -3.7313 -0.8894 28 1 3.1244 -3.7313 0.8905 29 1 3.8008 -6.1835 0.0015 30 1 1.2240 -8.9091 -1.4564 31 1 1.8525 -7.3584 -2.1007 32 1 5.2772 -10.7854 -1.4011 33 1 5.2546 -10.2177 2.8282 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374644015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:26 Heat of formation + Delta-G solvation = -152.420113 kcal Electronic energy + Delta-G solvation = -22817.907700 eV Core-core repulsion = 18798.547179 eV Total energy + Delta-G solvation = -4019.360522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.22665 -50.18653 -42.62378 -40.52977 -38.32210 -36.03999 -34.75892 -32.79017 -31.43387 -30.78823 -29.33530 -27.08710 -24.92120 -23.98378 -23.11010 -21.91030 -20.48626 -19.67631 -18.97643 -18.35094 -18.17178 -17.46079 -17.23856 -17.05006 -16.87536 -16.60734 -16.48897 -16.25502 -15.99472 -15.68848 -15.50878 -15.19631 -14.74073 -14.49589 -14.09055 -13.94119 -13.64407 -13.40747 -13.21003 -13.11422 -12.80308 -12.74104 -12.06788 -11.95821 -11.57540 -11.25645 -11.10440 -10.48053 -10.35012 -10.02577 -9.65996 -8.93095 -8.87964 -6.28526 -0.43330 -0.19124 1.13896 1.36604 1.51773 1.60435 1.75136 1.80531 1.88449 2.25193 2.34188 2.69175 2.88449 3.01589 3.06149 3.12123 3.36058 3.59232 3.71517 3.81925 3.88500 4.03187 4.12966 4.33208 4.36903 4.42728 4.57402 4.64102 4.77747 4.85425 5.09673 5.23030 5.63614 5.72200 6.14634 6.22404 6.96907 7.05151 8.50578 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.025862 B = 0.002722 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.404297 B =10284.726099 C =10548.970488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.018 4.018 3 Si 1.135 2.865 4 H -0.280 1.280 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.616 4.616 8 H 0.075 0.925 9 S -0.188 6.188 10 C -0.112 4.112 11 C 0.542 3.458 12 O -0.552 6.552 13 N -0.705 5.705 14 C 0.166 3.834 15 H 0.107 0.893 16 C 0.045 3.955 17 O -0.292 6.292 18 C 0.181 3.819 19 C -0.183 4.183 20 C 0.183 3.817 21 F -0.120 7.120 22 C -0.216 4.216 23 C 0.191 3.809 24 F -0.132 7.132 25 C -0.253 4.253 26 H 0.261 0.739 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.416 0.584 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.171 0.829 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.983 -24.063 0.083 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.222 4.222 3 Si 0.953 3.047 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.763 4.763 8 H 0.093 0.907 9 S 0.039 5.961 10 C -0.263 4.263 11 C 0.328 3.672 12 O -0.429 6.429 13 N -0.359 5.359 14 C 0.061 3.939 15 H 0.125 0.875 16 C -0.031 4.031 17 O -0.205 6.205 18 C 0.133 3.867 19 C -0.202 4.202 20 C 0.164 3.836 21 F -0.098 7.098 22 C -0.235 4.235 23 C 0.171 3.829 24 F -0.110 7.110 25 C -0.255 4.255 26 H 0.072 0.928 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.252 0.748 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.188 0.812 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 11.860 -22.810 -0.113 25.709 hybrid contribution 1.569 -1.162 0.441 2.002 sum 13.430 -23.972 0.328 27.480 Atomic orbital electron populations 1.70922 1.07998 1.30058 1.45830 1.27805 0.96312 1.06350 0.91686 0.82725 0.73953 0.69573 0.78425 1.20549 1.18776 1.18877 1.24042 0.96539 0.92868 1.62864 0.90699 1.84998 1.12690 1.00925 1.97484 1.23228 1.02473 0.93425 1.07193 1.19995 0.86198 0.86310 0.74708 1.90708 1.16820 1.85846 1.49571 1.45818 1.10492 1.03813 1.75735 1.20852 0.95983 0.79922 0.97120 0.87468 1.24474 0.85303 0.98498 0.94777 1.86910 1.35386 1.70243 1.27960 1.18887 0.92160 0.91034 0.84586 1.20237 1.01059 1.00495 0.98421 1.16627 0.87049 0.87595 0.92379 1.91587 1.59849 1.61795 1.96565 1.21074 1.00707 1.00383 1.01372 1.16509 0.93305 0.92188 0.80872 1.91569 1.86363 1.80685 1.52417 1.20629 1.06605 1.04635 0.93646 0.92783 0.86760 0.87157 0.74751 0.86350 0.86786 0.81186 0.80770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.53 13.67 21.65 0.30 -57.23 16 2 C -0.02 -1.05 5.49 84.86 0.47 -0.58 16 3 Si 1.14 48.84 29.92 68.60 2.05 50.89 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 7 C -0.62 -35.07 9.50 67.95 0.65 -34.42 16 8 H 0.07 4.00 7.80 -2.91 -0.02 3.98 16 9 S -0.19 -10.09 19.60 -56.49 -1.11 -11.19 16 10 C -0.11 -4.27 6.16 71.24 0.44 -3.84 16 11 C 0.54 18.66 7.85 87.66 0.69 19.35 16 12 O -0.55 -23.41 15.60 -3.03 -0.05 -23.46 16 13 N -0.70 -17.22 5.18 -441.86 -2.29 -19.51 16 14 C 0.17 3.59 3.40 45.13 0.15 3.74 16 15 H 0.11 2.62 7.72 -2.39 -0.02 2.60 16 16 C 0.05 0.83 7.73 72.56 0.56 1.39 16 17 O -0.29 -5.36 11.10 -95.08 -1.06 -6.41 16 18 C 0.18 2.97 7.04 22.67 0.16 3.13 16 19 C -0.18 -2.35 10.04 22.50 0.23 -2.12 16 20 C 0.18 2.34 7.28 22.31 0.16 2.50 16 21 F -0.12 -1.55 17.26 44.97 0.78 -0.78 16 22 C -0.22 -2.87 10.03 22.40 0.22 -2.65 16 23 C 0.19 3.37 7.29 22.28 0.16 3.53 16 24 F -0.13 -2.84 17.27 44.97 0.78 -2.07 16 25 C -0.25 -4.61 5.77 -19.47 -0.11 -4.72 16 26 H 0.26 17.05 7.12 -92.71 -0.66 16.39 16 27 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 28 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 29 H 0.42 8.15 8.60 -92.71 -0.80 7.35 16 30 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.11 2.31 8.10 -2.39 -0.02 2.29 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -73.60 318.36 3.67 -69.93 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.50 Total: 14.51 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 3.77 Total: -14.69 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.99 Total: -76.74 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.10 Total: -29.87 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 1.55 Total: -2.84 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.05 Total: 50.89 kcal Atomic # 16 Polarization: -10.09 SS G_CDS: -1.11 Total: -11.19 kcal Total: -73.60 3.67 -69.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374644015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.490 kcal (2) G-P(sol) polarization free energy of solvation -73.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds