Wall clock time and date at job start Tue Mar 31 2020 11:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86793 * 120.00188 * 2 1 4 4 H 1.48497 * 109.47120 * 275.18800 * 3 2 1 5 5 H 1.48502 * 109.46974 * 35.18553 * 3 2 1 6 6 H 1.48498 * 109.47401 * 155.18460 * 3 2 1 7 7 C 1.39954 * 119.99480 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00715 * 347.80430 * 7 2 1 9 9 C 1.41068 * 119.99455 * 167.79906 * 7 2 1 10 10 C 1.40748 * 120.29459 * 330.93897 * 9 7 2 11 11 C 1.37538 * 119.81370 * 180.02562 * 10 9 7 12 12 Cl 1.73602 * 119.79114 * 179.97438 * 11 10 9 13 13 C 1.39009 * 120.42015 * 0.02562 * 11 10 9 14 14 C 1.38186 * 120.60058 * 359.71940 * 13 11 10 15 15 C 1.38605 * 120.17594 * 0.55313 * 14 13 11 16 16 N 1.39149 * 120.21459 * 179.72122 * 15 14 13 17 17 C 1.34767 * 120.00149 * 339.76149 * 16 15 14 18 18 O 1.21292 * 120.00074 * 354.61542 * 17 16 15 19 19 C 1.50708 * 120.00291 * 174.89431 * 17 16 15 20 20 H 1.08999 * 115.54533 * 325.39499 * 19 17 16 21 21 C 1.53003 * 117.49936 * 111.10110 * 19 17 16 22 22 C 1.52997 * 117.49609 * 179.72406 * 19 17 16 23 23 H 1.08998 * 117.50632 * 0.02562 * 22 19 17 24 24 C 1.53007 * 117.49312 * 144.99949 * 22 19 17 25 25 F 1.39900 * 109.46964 * 179.97438 * 24 22 19 26 26 F 1.39899 * 109.47105 * 299.99644 * 24 22 19 27 27 H 0.97004 * 120.00015 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.08860 * 0.04687 * 10 9 7 29 29 H 1.07999 * 119.69650 * 179.97438 * 13 11 10 30 30 H 1.07998 * 119.91493 * 180.28788 * 14 13 11 31 31 H 0.97008 * 120.00106 * 159.76022 * 16 15 14 32 32 H 1.08994 * 117.49769 * 214.97831 * 21 19 17 33 33 H 1.09001 * 117.49861 * 0.02562 * 21 19 17 34 34 H 1.09000 * 109.47211 * 59.99847 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.3804 2.1096 -1.3943 5 1 1.4991 2.6185 0.8068 6 1 3.5906 1.4110 0.5876 7 6 2.0082 -1.2121 0.0005 8 1 1.4865 -2.1367 0.1985 9 6 3.3950 -1.2260 -0.2577 10 6 3.9745 -0.2394 -1.0773 11 6 5.3276 -0.2627 -1.3229 12 17 6.0417 0.9541 -2.3344 13 6 6.1268 -1.2550 -0.7671 14 6 5.5768 -2.2290 0.0443 15 6 4.2152 -2.2325 0.3037 16 7 3.6597 -3.2163 1.1160 17 6 4.3197 -4.3733 1.3204 18 8 5.3497 -4.5981 0.7207 19 6 3.7746 -5.3907 2.2895 20 1 3.2679 -4.9826 3.1640 21 6 3.2400 -6.7022 1.7106 22 6 4.5667 -6.6868 2.4727 23 1 5.4821 -6.8037 1.8927 24 6 4.5866 -7.3110 3.8696 25 9 5.3530 -8.4812 3.8465 26 9 5.1454 -6.4048 4.7772 27 1 -0.4850 0.8401 -0.0004 28 1 3.3584 0.5340 -1.5118 29 1 7.1879 -1.2624 -0.9681 30 1 6.2088 -2.9921 0.4740 31 1 2.7973 -3.0692 1.5351 32 1 2.3813 -7.1571 2.2042 33 1 3.2829 -6.8294 0.6289 34 1 3.5681 -7.5501 4.1753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410971812.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:25 Heat of formation + Delta-G solvation = -116.998263 kcal Electronic energy + Delta-G solvation = -23159.365947 eV Core-core repulsion = 19139.497726 eV Total energy + Delta-G solvation = -4019.868221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.86473 -47.91504 -41.60683 -39.67988 -37.79612 -37.25220 -35.56499 -35.46891 -32.48409 -30.57601 -28.27975 -27.18284 -25.35782 -23.90538 -22.65254 -22.09099 -21.04867 -19.53917 -19.03663 -18.57951 -18.10602 -17.90871 -17.28516 -17.15150 -16.28464 -16.22324 -15.85621 -15.39562 -15.15840 -14.83061 -14.59253 -14.46683 -14.30047 -14.12749 -13.87436 -13.77487 -13.39783 -13.09442 -12.87699 -12.83234 -12.61044 -12.23636 -11.97335 -11.78025 -11.71380 -11.62494 -11.54730 -11.18664 -11.04740 -10.56394 -9.67238 -8.96354 -8.83325 -6.54158 0.37349 0.65181 1.26237 1.31432 1.35885 1.45884 1.51099 2.06954 2.09292 2.45640 2.55706 2.88371 3.31872 3.34173 3.42777 3.59954 3.77436 4.00225 4.13291 4.23880 4.24874 4.39465 4.64856 4.70102 4.71934 4.90914 4.95501 5.02635 5.16331 5.36352 5.40480 5.67077 5.70242 5.98872 6.19432 6.41759 6.69137 6.73487 7.22471 8.09247 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.003744 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.227515 B = 7477.403080 C = 8710.607322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.063 3.937 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.250 1.250 7 C -0.459 4.459 8 H 0.085 0.915 9 C 0.072 3.928 10 C -0.231 4.231 11 C -0.006 4.006 12 Cl -0.094 7.094 13 C -0.204 4.204 14 C -0.097 4.097 15 C 0.042 3.958 16 N -0.631 5.631 17 C 0.526 3.474 18 O -0.567 6.567 19 C -0.174 4.174 20 H 0.161 0.839 21 C -0.101 4.101 22 C -0.198 4.198 23 H 0.112 0.888 24 C 0.296 3.704 25 F -0.213 7.213 26 F -0.218 7.218 27 H 0.296 0.704 28 H 0.108 0.892 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.420 0.580 32 H 0.158 0.842 33 H 0.102 0.898 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.020 -9.595 6.716 11.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.155 4.155 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.174 1.174 7 C -0.488 4.488 8 H 0.103 0.897 9 C 0.067 3.933 10 C -0.251 4.251 11 C -0.033 4.033 12 Cl -0.066 7.066 13 C -0.225 4.225 14 C -0.118 4.118 15 C -0.053 4.053 16 N -0.273 5.273 17 C 0.315 3.685 18 O -0.448 6.448 19 C -0.195 4.195 20 H 0.178 0.822 21 C -0.138 4.138 22 C -0.217 4.217 23 H 0.130 0.870 24 C 0.243 3.757 25 F -0.195 7.195 26 F -0.199 7.199 27 H 0.107 0.893 28 H 0.125 0.875 29 H 0.148 0.852 30 H 0.159 0.841 31 H 0.258 0.742 32 H 0.175 0.825 33 H 0.121 0.879 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.510 -9.591 6.300 11.746 hybrid contribution 0.077 1.247 -0.241 1.273 sum 2.587 -8.343 6.059 10.631 Atomic orbital electron populations 1.69637 1.08523 1.31581 1.35768 1.26525 0.95238 1.03217 0.90531 0.85818 0.80136 0.77984 0.79298 1.19234 1.20466 1.17366 1.19235 0.91089 0.95588 1.42923 0.89675 1.17446 0.93130 0.91817 0.90900 1.20711 0.93387 1.04356 1.06691 1.20711 0.92986 0.92412 0.97195 1.98274 1.84146 1.55726 1.68436 1.20527 0.99448 0.97186 1.05311 1.21219 0.93453 0.98507 0.98575 1.17895 0.91801 0.95136 1.00496 1.42954 1.23439 1.14316 1.46542 1.20283 0.83862 0.81812 0.82496 1.90572 1.25793 1.78025 1.50383 1.22211 1.06094 0.88948 1.02199 0.82172 1.23347 0.95514 0.93566 1.01420 1.23294 1.00208 1.00272 0.97973 0.86969 1.21755 0.93832 0.74166 0.85934 1.92968 1.79635 1.49924 1.96934 1.92983 1.88440 1.68900 1.69623 0.89300 0.87462 0.85209 0.84074 0.74200 0.82457 0.87922 0.81912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.47 13.93 21.83 0.30 -40.16 16 2 C 0.06 2.99 5.48 85.25 0.47 3.46 16 3 Si 0.94 40.09 24.36 68.60 1.67 41.76 16 4 H -0.27 -11.22 6.78 99.48 0.67 -10.54 16 5 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.25 -11.04 6.42 99.48 0.64 -10.40 16 7 C -0.46 -22.12 8.88 23.38 0.21 -21.91 16 8 H 0.09 4.14 7.32 -2.92 -0.02 4.12 16 9 C 0.07 3.35 5.20 -21.18 -0.11 3.24 16 10 C -0.23 -10.68 6.64 22.72 0.15 -10.52 16 11 C -0.01 -0.26 6.31 22.29 0.14 -0.12 16 12 Cl -0.09 -3.50 28.94 -2.72 -0.08 -3.57 16 13 C -0.20 -8.43 9.82 22.44 0.22 -8.21 16 14 C -0.10 -4.14 8.76 22.35 0.20 -3.95 16 15 C 0.04 1.84 6.52 38.86 0.25 2.09 16 16 N -0.63 -22.64 5.17 -302.29 -1.56 -24.21 16 17 C 0.53 17.18 7.45 87.66 0.65 17.83 16 18 O -0.57 -22.38 13.17 -3.07 -0.04 -22.42 16 19 C -0.17 -3.65 5.87 -11.54 -0.07 -3.72 16 20 H 0.16 2.47 8.14 -2.39 -0.02 2.45 16 21 C -0.10 -1.51 9.88 30.60 0.30 -1.21 16 22 C -0.20 -3.84 5.41 -10.79 -0.06 -3.89 16 23 H 0.11 2.83 7.67 -2.39 -0.02 2.81 16 24 C 0.30 4.68 5.50 71.98 0.40 5.08 16 25 F -0.21 -4.28 17.34 44.97 0.78 -3.50 16 26 F -0.22 -4.74 17.29 44.97 0.78 -3.97 16 27 H 0.30 13.16 8.30 -92.71 -0.77 12.39 16 28 H 0.11 5.00 4.18 -2.91 -0.01 4.99 16 29 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 30 H 0.14 6.01 5.44 -2.91 -0.02 5.99 16 31 H 0.42 13.57 7.41 -92.70 -0.69 12.88 16 32 H 0.16 0.98 8.05 -2.39 -0.02 0.96 16 33 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.16 1.00 7.90 -2.39 -0.02 0.98 16 Total: -1.00 -60.20 312.84 5.00 -55.20 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.40 Total: 22.69 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 2.75 Total: -21.82 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -1.26 Total: -64.37 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.04 Total: -22.42 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 1.56 Total: -7.47 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.67 Total: 41.76 kcal Atomic # 17 Polarization: -3.50 SS G_CDS: -0.08 Total: -3.57 kcal Total: -60.20 5.00 -55.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410971812.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.795 kcal (2) G-P(sol) polarization free energy of solvation -60.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds