Wall clock time and date at job start Tue Mar 31 2020 11:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00258 * 2 1 4 4 H 1.48498 * 109.47180 * 271.42157 * 3 2 1 5 5 H 1.48501 * 109.47270 * 31.42271 * 3 2 1 6 6 H 1.48501 * 109.47272 * 151.42202 * 3 2 1 7 7 C 1.37879 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99846 * 358.99929 * 7 2 1 9 9 C 1.50698 * 120.00362 * 178.99857 * 7 2 1 10 10 C 1.53002 * 115.55210 * 87.64302 * 9 7 2 11 11 N 1.46500 * 109.47107 * 56.04138 * 10 9 7 12 12 C 1.34766 * 120.00062 * 185.06938 * 11 10 9 13 13 O 1.21584 * 120.00059 * 4.88681 * 12 11 10 14 14 C 1.47578 * 120.00252 * 184.88766 * 12 11 10 15 15 C 1.39740 * 120.13353 * 354.46790 * 14 12 11 16 16 C 1.37741 * 119.92429 * 180.02562 * 15 14 12 17 17 C 1.38742 * 120.20409 * 0.02562 * 16 15 14 18 18 F 1.35099 * 119.86274 * 179.97438 * 17 16 15 19 19 C 1.38585 * 120.27457 * 359.97438 * 17 16 15 20 20 Cl 1.73599 * 119.96116 * 180.02562 * 19 17 16 21 21 C 1.38294 * 120.07160 * 0.02562 * 19 17 16 22 22 F 1.35100 * 120.10066 * 180.02562 * 21 19 17 23 23 C 1.52998 * 117.49854 * 233.31586 * 9 7 2 24 24 C 1.53006 * 117.49465 * 301.97159 * 9 7 2 25 25 H 0.97002 * 119.99540 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46946 * 296.04197 * 10 9 7 27 27 H 1.08996 * 109.47307 * 176.04073 * 10 9 7 28 28 H 0.97001 * 119.99834 * 5.06503 * 11 10 9 29 29 H 1.07995 * 120.03764 * 359.73698 * 15 14 12 30 30 H 1.07998 * 119.89797 * 179.97438 * 16 15 14 31 31 H 1.08999 * 117.50015 * 215.00091 * 23 9 7 32 32 H 1.09000 * 117.49786 * 0.02562 * 23 9 7 33 33 H 1.08997 * 117.50101 * 359.97438 * 24 9 7 34 34 H 1.09004 * 117.49239 * 144.96985 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4666 2.0637 -1.3996 5 1 1.4621 2.6438 0.7299 6 1 3.5614 1.4315 0.6697 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 0.0154 9 6 3.5113 -1.1943 -0.0233 10 6 4.1921 -1.1261 1.3452 11 7 3.7191 -2.2321 2.1815 12 6 4.1062 -2.3163 3.4696 13 8 4.7749 -1.4286 3.9626 14 6 3.7185 -3.4859 4.2817 15 6 2.8555 -4.4506 3.7552 16 6 2.4960 -5.5403 4.5172 17 6 2.9879 -5.6831 5.8067 18 9 2.6304 -6.7543 6.5482 19 6 3.8443 -4.7314 6.3372 20 17 4.4554 -4.9185 7.9513 21 6 4.2126 -3.6329 5.5821 22 9 5.0479 -2.7050 6.0985 23 6 4.2012 -2.0141 -1.1155 24 6 4.2002 -0.4853 -1.1912 25 1 -0.4849 0.8401 0.0004 26 1 3.9491 -0.1781 1.8250 27 1 5.2719 -1.2028 1.2181 28 1 3.1272 -2.9038 1.8080 29 1 2.4670 -4.3395 2.7537 30 1 1.8287 -6.2853 4.1100 31 1 5.1400 -2.5050 -0.8591 32 1 3.5652 -2.5530 -1.8178 33 1 3.5636 -0.0191 -1.9431 34 1 5.1382 0.0301 -0.9843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431155536.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:35 Heat of formation + Delta-G solvation = -75.720552 kcal Electronic energy + Delta-G solvation = -23398.613416 eV Core-core repulsion = 19380.535131 eV Total energy + Delta-G solvation = -4018.078285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.44380 -49.12049 -39.99017 -38.42412 -37.14279 -36.83950 -33.74178 -32.22176 -31.20892 -30.92199 -26.92053 -25.45450 -23.99055 -23.27763 -21.82826 -20.45520 -19.50527 -18.62380 -17.81098 -17.59566 -16.51670 -16.49731 -16.02520 -15.62991 -15.56763 -15.22373 -15.05693 -14.68142 -14.54635 -14.10143 -13.50888 -13.08895 -12.99961 -12.87410 -12.86645 -12.57772 -12.28854 -12.06709 -11.73732 -11.40544 -11.23610 -10.83841 -10.58893 -10.28859 -9.87177 -9.64640 -9.28353 -9.24085 -9.16124 -8.76226 -8.68161 -8.41429 -6.24609 -4.30426 0.17272 0.48656 1.51835 2.50205 3.22586 3.24792 3.34707 3.36748 3.42412 3.47689 3.91297 4.20701 4.32954 4.40095 4.55341 4.81433 5.02587 5.10163 5.20941 5.43534 5.55878 5.59251 5.62528 5.91326 5.97847 6.11386 6.13966 6.34811 6.39279 6.62070 6.83965 6.94733 6.99358 7.58367 7.91382 8.29930 8.49509 8.73487 9.38664 10.86259 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.003554 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.888786 B = 7875.557885 C = 8181.628810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.083 3.917 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.494 4.494 8 H 0.079 0.921 9 C -0.018 4.018 10 C 0.154 3.846 11 N -0.688 5.688 12 C 0.550 3.450 13 O -0.535 6.535 14 C -0.161 4.161 15 C -0.020 4.020 16 C -0.158 4.158 17 C 0.159 3.841 18 F -0.116 7.116 19 C -0.132 4.132 20 Cl -0.027 7.027 21 C 0.196 3.804 22 F -0.093 7.093 23 C -0.179 4.179 24 C -0.192 4.192 25 H 0.266 0.734 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.405 0.595 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.279 -12.144 8.821 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.121 4.121 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.180 1.180 7 C -0.531 4.531 8 H 0.097 0.903 9 C -0.019 4.019 10 C 0.031 3.969 11 N -0.338 5.338 12 C 0.335 3.665 13 O -0.414 6.414 14 C -0.166 4.166 15 C -0.039 4.039 16 C -0.177 4.177 17 C 0.138 3.862 18 F -0.094 7.094 19 C -0.161 4.161 20 Cl 0.002 6.998 21 C 0.174 3.826 22 F -0.071 7.071 23 C -0.216 4.216 24 C -0.230 4.230 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.241 0.759 29 H 0.178 0.822 30 H 0.178 0.822 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.672 -11.392 9.333 16.167 hybrid contribution 0.128 0.616 0.179 0.654 sum 6.800 -10.776 9.511 15.900 Atomic orbital electron populations 1.69872 1.06388 1.27409 1.49195 1.24956 0.94573 0.99180 0.93397 0.86878 0.80820 0.83308 0.78434 1.20378 1.22005 1.18044 1.20133 0.85907 0.94494 1.52597 0.90345 1.19617 0.95429 1.01011 0.85861 1.21221 0.95583 0.89110 0.91028 1.45698 1.49149 1.29260 1.09651 1.17696 0.81165 0.85317 0.82358 1.90832 1.39675 1.39403 1.71449 1.20286 1.03177 0.99288 0.93851 1.21345 0.91937 0.90217 1.00423 1.21153 1.03518 1.01036 0.92006 1.17272 0.95045 0.83971 0.89909 1.91582 1.89650 1.52112 1.76043 1.20836 1.05844 0.98498 0.90934 1.98406 1.86209 1.97201 1.17987 1.17014 0.89735 0.85602 0.90223 1.91665 1.66968 1.62485 1.85949 1.22888 1.01048 0.93090 1.04553 1.22942 1.01459 0.94974 1.03600 0.92377 0.91200 0.93461 0.75879 0.82191 0.82235 0.90821 0.89326 0.89085 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.96 55.43 0.77 -24.55 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 20.72 24.89 -169.99 -4.23 16.49 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.26 -5.81 5.61 56.52 0.32 -5.49 16 7 C -0.49 -12.12 8.88 -34.44 -0.31 -12.43 16 8 H 0.08 2.04 8.06 -52.48 -0.42 1.62 16 9 C -0.02 -0.37 0.93 -155.66 -0.14 -0.51 16 10 C 0.15 3.03 5.34 -4.04 -0.02 3.01 16 11 N -0.69 -11.92 5.31 -61.34 -0.33 -12.25 16 12 C 0.55 9.67 7.75 -12.46 -0.10 9.58 16 13 O -0.53 -11.35 15.33 5.29 0.08 -11.27 16 14 C -0.16 -2.25 5.88 -104.91 -0.62 -2.87 16 15 C -0.02 -0.21 9.53 -39.20 -0.37 -0.59 16 16 C -0.16 -1.40 10.00 -39.58 -0.40 -1.80 16 17 C 0.16 1.67 7.28 -39.27 -0.29 1.38 16 18 F -0.12 -1.20 16.82 2.25 0.04 -1.16 16 19 C -0.13 -1.61 6.32 -39.43 -0.25 -1.86 16 20 Cl -0.03 -0.31 28.26 -51.86 -1.47 -1.78 16 21 C 0.20 2.77 7.25 -38.95 -0.28 2.49 16 22 F -0.09 -1.51 15.13 2.25 0.03 -1.48 16 23 C -0.18 -3.16 9.93 -26.70 -0.27 -3.43 16 24 C -0.19 -3.71 7.57 -26.69 -0.20 -3.91 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.07 1.55 6.49 -51.93 -0.34 1.21 16 27 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 28 H 0.40 6.18 6.22 -40.82 -0.25 5.93 16 29 H 0.16 1.40 6.42 -52.49 -0.34 1.06 16 30 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.09 1.86 7.17 -51.93 -0.37 1.49 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -29.65 314.93 -6.74 -36.39 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -3.05 Total: 3.72 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -3.34 Total: -8.85 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.45 Total: -36.80 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.07 Total: -2.64 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.23 Total: 16.49 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.47 Total: -1.78 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.65 -6.74 -36.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431155536.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.328 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds