Wall clock time and date at job start Tue Mar 31 2020 11:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00258 * 2 1 4 4 H 1.48498 * 109.47180 * 271.42157 * 3 2 1 5 5 H 1.48501 * 109.47270 * 31.42271 * 3 2 1 6 6 H 1.48501 * 109.47272 * 151.42202 * 3 2 1 7 7 C 1.37879 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99846 * 358.99929 * 7 2 1 9 9 C 1.50698 * 120.00362 * 178.99857 * 7 2 1 10 10 C 1.53002 * 115.55210 * 87.64302 * 9 7 2 11 11 N 1.46500 * 109.47107 * 56.04138 * 10 9 7 12 12 C 1.34766 * 120.00062 * 185.06938 * 11 10 9 13 13 O 1.21584 * 120.00059 * 4.88681 * 12 11 10 14 14 C 1.47578 * 120.00252 * 184.88766 * 12 11 10 15 15 C 1.39740 * 120.13353 * 354.46790 * 14 12 11 16 16 C 1.37741 * 119.92429 * 180.02562 * 15 14 12 17 17 C 1.38742 * 120.20409 * 0.02562 * 16 15 14 18 18 F 1.35099 * 119.86274 * 179.97438 * 17 16 15 19 19 C 1.38585 * 120.27457 * 359.97438 * 17 16 15 20 20 Cl 1.73599 * 119.96116 * 180.02562 * 19 17 16 21 21 C 1.38294 * 120.07160 * 0.02562 * 19 17 16 22 22 F 1.35100 * 120.10066 * 180.02562 * 21 19 17 23 23 C 1.52998 * 117.49854 * 233.31586 * 9 7 2 24 24 C 1.53006 * 117.49465 * 301.97159 * 9 7 2 25 25 H 0.97002 * 119.99540 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46946 * 296.04197 * 10 9 7 27 27 H 1.08996 * 109.47307 * 176.04073 * 10 9 7 28 28 H 0.97001 * 119.99834 * 5.06503 * 11 10 9 29 29 H 1.07995 * 120.03764 * 359.73698 * 15 14 12 30 30 H 1.07998 * 119.89797 * 179.97438 * 16 15 14 31 31 H 1.08999 * 117.50015 * 215.00091 * 23 9 7 32 32 H 1.09000 * 117.49786 * 0.02562 * 23 9 7 33 33 H 1.08997 * 117.50101 * 359.97438 * 24 9 7 34 34 H 1.09004 * 117.49239 * 144.96985 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4666 2.0637 -1.3996 5 1 1.4621 2.6438 0.7299 6 1 3.5614 1.4315 0.6697 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 0.0154 9 6 3.5113 -1.1943 -0.0233 10 6 4.1921 -1.1261 1.3452 11 7 3.7191 -2.2321 2.1815 12 6 4.1062 -2.3163 3.4696 13 8 4.7749 -1.4286 3.9626 14 6 3.7185 -3.4859 4.2817 15 6 2.8555 -4.4506 3.7552 16 6 2.4960 -5.5403 4.5172 17 6 2.9879 -5.6831 5.8067 18 9 2.6304 -6.7543 6.5482 19 6 3.8443 -4.7314 6.3372 20 17 4.4554 -4.9185 7.9513 21 6 4.2126 -3.6329 5.5821 22 9 5.0479 -2.7050 6.0985 23 6 4.2012 -2.0141 -1.1155 24 6 4.2002 -0.4853 -1.1912 25 1 -0.4849 0.8401 0.0004 26 1 3.9491 -0.1781 1.8250 27 1 5.2719 -1.2028 1.2181 28 1 3.1272 -2.9038 1.8080 29 1 2.4670 -4.3395 2.7537 30 1 1.8287 -6.2853 4.1100 31 1 5.1400 -2.5050 -0.8591 32 1 3.5652 -2.5530 -1.8178 33 1 3.5636 -0.0191 -1.9431 34 1 5.1382 0.0301 -0.9843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431155536.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:33 Heat of formation + Delta-G solvation = -93.773155 kcal Electronic energy + Delta-G solvation = -23399.396236 eV Core-core repulsion = 19380.535131 eV Total energy + Delta-G solvation = -4018.861105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.058 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -50.30231 -50.23155 -41.21705 -39.57929 -38.64323 -37.81333 -35.19933 -34.19467 -32.22744 -31.85511 -28.46797 -27.23271 -25.04828 -24.24438 -23.31718 -21.75008 -21.12211 -19.69182 -18.93054 -18.77664 -18.10195 -17.49078 -17.13710 -16.87790 -16.79500 -16.60633 -16.35603 -16.01689 -15.66702 -15.46838 -14.79715 -14.67447 -14.35853 -14.20095 -13.97028 -13.89832 -13.79339 -13.08561 -12.99103 -12.72782 -12.59510 -12.33114 -12.16977 -11.97081 -11.58073 -11.21315 -10.95677 -10.63539 -10.36929 -10.20842 -10.13051 -9.85414 -8.28103 -6.33268 -0.79458 -0.42536 0.59497 1.33974 1.42012 1.45123 1.50049 2.04523 2.29710 2.37698 2.38000 2.96852 3.08033 3.19634 3.36923 3.45429 3.61881 4.02893 4.12535 4.31061 4.39028 4.43156 4.53812 4.55497 4.68224 4.76738 4.84398 4.91521 5.13583 5.28148 5.29105 5.47179 5.53616 5.72420 6.30768 6.55445 6.75884 7.14928 7.38068 8.85634 Molecular weight = 315.06amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.003554 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.888786 B = 7875.557885 C = 8181.628810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.032 3.968 3 Si 0.919 3.081 4 H -0.269 1.269 5 H -0.308 1.308 6 H -0.243 1.243 7 C -0.474 4.474 8 H 0.057 0.943 9 C -0.041 4.041 10 C 0.161 3.839 11 N -0.684 5.684 12 C 0.549 3.451 13 O -0.579 6.579 14 C -0.177 4.177 15 C -0.008 4.008 16 C -0.133 4.133 17 C 0.167 3.833 18 F -0.111 7.111 19 C -0.137 4.137 20 Cl -0.027 7.027 21 C 0.176 3.824 22 F -0.114 7.114 23 C -0.148 4.148 24 C -0.197 4.197 25 H 0.263 0.737 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.415 0.585 29 H 0.180 0.820 30 H 0.201 0.799 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.029 -14.214 8.256 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.167 4.167 3 Si 0.746 3.254 4 H -0.194 1.194 5 H -0.236 1.236 6 H -0.166 1.166 7 C -0.512 4.512 8 H 0.075 0.925 9 C -0.042 4.042 10 C 0.037 3.963 11 N -0.334 5.334 12 C 0.336 3.664 13 O -0.460 6.460 14 C -0.182 4.182 15 C -0.027 4.027 16 C -0.152 4.152 17 C 0.146 3.854 18 F -0.089 7.089 19 C -0.165 4.165 20 Cl 0.002 6.998 21 C 0.154 3.846 22 F -0.092 7.092 23 C -0.185 4.185 24 C -0.235 4.235 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.253 0.747 29 H 0.198 0.802 30 H 0.218 0.782 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.437 -13.495 8.751 17.720 hybrid contribution -0.132 1.109 0.374 1.178 sum 7.304 -12.386 9.125 17.030 Atomic orbital electron populations 1.69987 1.07845 1.27692 1.52418 1.25589 0.94955 1.01987 0.94120 0.86203 0.80256 0.80259 0.78689 1.19434 1.23555 1.16600 1.20352 0.88198 0.93102 1.49534 0.92461 1.19473 0.93241 1.04435 0.87100 1.20990 0.96442 0.88587 0.90282 1.45617 1.49290 1.28890 1.09617 1.18173 0.80156 0.85777 0.82307 1.90802 1.41674 1.41317 1.72243 1.20054 1.05281 0.99216 0.93626 1.21561 0.90445 0.89436 1.01235 1.21530 1.02335 1.00678 0.90630 1.17399 0.94203 0.83412 0.90381 1.91604 1.89432 1.51756 1.76102 1.20884 1.06284 0.98437 0.90945 1.98404 1.86324 1.97140 1.17904 1.17211 0.90455 0.86133 0.90781 1.91605 1.67850 1.63462 1.86289 1.22929 1.01579 0.92177 1.01777 1.23007 1.01824 0.96553 1.02092 0.92808 0.94277 0.91815 0.74694 0.80240 0.78204 0.87669 0.89243 0.90451 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.47 13.96 21.45 0.30 -54.17 16 2 C 0.03 1.71 5.47 84.66 0.46 2.17 16 3 Si 0.92 42.71 24.89 68.60 1.71 44.42 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.31 -14.92 7.11 99.48 0.71 -14.22 16 6 H -0.24 -10.64 5.61 99.48 0.56 -10.08 16 7 C -0.47 -23.03 8.88 25.60 0.23 -22.80 16 8 H 0.06 2.97 8.06 -2.91 -0.02 2.95 16 9 C -0.04 -1.61 0.93 -52.93 -0.05 -1.66 16 10 C 0.16 6.11 5.34 86.38 0.46 6.57 16 11 N -0.68 -22.86 5.31 -466.25 -2.48 -25.33 16 12 C 0.55 19.11 7.75 86.71 0.67 19.78 16 13 O -0.58 -24.98 15.33 -3.98 -0.06 -25.04 16 14 C -0.18 -4.75 5.88 -20.05 -0.12 -4.87 16 15 C -0.01 -0.15 9.53 22.52 0.21 0.07 16 16 C -0.13 -1.82 10.00 22.27 0.22 -1.60 16 17 C 0.17 3.02 7.28 22.47 0.16 3.18 16 18 F -0.11 -1.96 16.82 44.97 0.76 -1.20 16 19 C -0.14 -3.15 6.32 22.37 0.14 -3.01 16 20 Cl -0.03 -0.60 28.26 -2.72 -0.08 -0.68 16 21 C 0.18 4.90 7.25 22.68 0.16 5.07 16 22 F -0.11 -3.82 15.13 44.97 0.68 -3.14 16 23 C -0.15 -4.70 9.93 30.62 0.30 -4.39 16 24 C -0.20 -7.07 7.57 30.62 0.23 -6.84 16 25 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 26 H 0.04 1.72 6.49 -2.39 -0.02 1.71 16 27 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 28 H 0.41 11.89 6.22 -92.71 -0.58 11.31 16 29 H 0.18 2.50 6.42 -2.91 -0.02 2.48 16 30 H 0.20 1.21 8.06 -2.91 -0.02 1.18 16 31 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.08 3.00 7.17 -2.39 -0.02 2.99 16 34 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 Total: -1.00 -66.11 314.93 4.38 -61.73 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.45 Total: 11.74 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 3.10 Total: -8.33 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.18 Total: -79.50 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.04 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 1.44 Total: -4.34 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.71 Total: 44.42 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -66.11 4.38 -61.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431155536.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.043 kcal (2) G-P(sol) polarization free energy of solvation -66.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds