Wall clock time and date at job start Tue Mar 31 2020 10:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99702 * 2 1 4 4 C 1.50699 * 120.00033 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47008 * 94.99833 * 4 2 1 6 6 S 1.65601 * 119.99744 * 164.99789 * 5 4 2 7 7 O 1.42104 * 106.40284 * 311.45833 * 6 5 4 8 8 O 1.42092 * 106.40229 * 178.54056 * 6 5 4 9 9 C 1.76201 * 107.21800 * 65.00068 * 6 5 4 10 10 C 1.38629 * 119.75664 * 115.25353 * 9 6 5 11 11 C 1.37601 * 120.26043 * 180.29453 * 10 9 6 12 12 C 1.40740 * 119.77192 * 359.72858 * 11 10 9 13 13 C 1.41402 * 120.23671 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99902 * 24.38233 * 13 12 11 15 15 C 1.39942 * 120.00052 * 204.37458 * 13 12 11 16 16 N 1.30829 * 119.99902 * 17.86558 * 15 13 12 17 17 Si 1.86796 * 120.00336 * 197.86037 * 15 13 12 18 18 H 1.48507 * 109.47003 * 60.00211 * 17 15 13 19 19 H 1.48498 * 109.47335 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47450 * 300.00363 * 17 15 13 21 21 C 1.40671 * 119.52576 * 359.97438 * 12 11 10 22 22 C 1.37757 * 119.73319 * 0.02562 * 21 12 11 23 23 Cl 1.73593 * 119.89142 * 179.97438 * 22 21 12 24 24 H 1.08004 * 119.99716 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.00269 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46884 * 270.00310 * 3 2 1 27 27 H 1.08998 * 109.47418 * 29.99885 * 3 2 1 28 28 H 1.09000 * 109.47296 * 150.00402 * 3 2 1 29 29 H 1.08997 * 109.47130 * 334.99350 * 4 2 1 30 30 H 1.09004 * 109.46816 * 214.99762 * 4 2 1 31 31 H 0.96990 * 119.99906 * 345.00128 * 5 4 2 32 32 H 1.07995 * 119.87162 * 0.02562 * 10 9 6 33 33 H 1.08002 * 120.11530 * 179.70100 * 11 10 9 34 34 H 0.97000 * 119.99707 * 180.02562 * 16 15 13 35 35 H 1.08004 * 120.13404 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4119 -1.6672 -1.3767 6 16 3.5473 -2.8383 -1.6626 7 8 4.6651 -2.5217 -0.8443 8 8 3.6323 -2.9788 -3.0740 9 6 2.8962 -4.3566 -1.0497 10 6 2.6195 -5.3916 -1.9296 11 6 2.1051 -6.5795 -1.4630 12 6 1.8651 -6.7443 -0.0860 13 6 1.3373 -7.9610 0.4042 14 1 1.4766 -8.8743 -0.1551 15 6 0.6345 -7.9819 1.6142 16 7 0.1616 -6.8697 2.1152 17 14 0.3715 -9.5976 2.5139 18 1 1.6880 -10.1951 2.8534 19 1 -0.3968 -9.3506 3.7605 20 1 -0.3862 -10.5317 1.6429 21 6 2.1551 -5.6902 0.7992 22 6 2.6696 -4.5095 0.3105 23 17 3.0283 -3.2058 1.3991 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 2.2450 1.6198 -1.0277 27 1 1.4744 2.0648 0.5138 28 1 3.0159 1.1749 0.5138 29 1 1.4386 -2.0856 0.4335 30 1 2.9742 -1.1990 0.5889 31 1 1.9776 -1.2209 -2.1204 32 1 2.8043 -5.2635 -2.9858 33 1 1.8859 -7.3825 -2.1511 34 1 -0.3252 -6.8841 2.9540 35 1 1.9752 -5.8061 1.8578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451424038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:32 Heat of formation + Delta-G solvation = -46.777511 kcal Electronic energy + Delta-G solvation = -22033.797556 eV Core-core repulsion = 18570.814721 eV Total energy + Delta-G solvation = -3462.982834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -37.92043 -37.02592 -36.37383 -35.72022 -35.10001 -34.13833 -32.81682 -30.35279 -29.49545 -27.28617 -26.06211 -25.57197 -21.84009 -21.35099 -19.18473 -18.59301 -17.87932 -17.14559 -16.56150 -15.86747 -15.68461 -14.65623 -14.61433 -14.49385 -14.37237 -13.70577 -13.42937 -13.14754 -12.81394 -12.62849 -12.40639 -12.17855 -12.02620 -11.61662 -11.53541 -11.50250 -11.34911 -11.29152 -11.21358 -10.98689 -10.63428 -10.47587 -10.11668 -10.00265 -9.64972 -9.50847 -9.07571 -8.93058 -8.13402 -7.73591 -7.29360 -4.97392 1.20093 2.02270 2.23491 2.62455 2.80327 2.83268 2.87301 2.90931 3.56243 3.79594 4.08215 4.45661 4.82852 5.00305 5.12924 5.23280 5.51361 5.63756 5.71442 5.91022 5.92149 5.95317 5.97561 6.26184 6.37624 6.52236 6.64031 6.64669 6.77877 6.88007 6.97005 7.14450 7.29308 7.39948 7.54992 7.73364 8.04719 8.31099 8.37961 9.60937 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.004867 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.484528 B = 5751.268850 C = 6577.642413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.138 4.138 3 C -0.119 4.119 4 C 0.146 3.854 5 N -1.117 6.117 6 S 2.698 3.302 7 O -0.970 6.970 8 O -0.987 6.987 9 C -0.791 4.791 10 C 0.011 3.989 11 C -0.237 4.237 12 C 0.141 3.859 13 C -0.423 4.423 14 H 0.093 0.907 15 C 0.070 3.930 16 N -0.758 5.758 17 Si 0.921 3.079 18 H -0.257 1.257 19 H -0.273 1.273 20 H -0.260 1.260 21 C -0.167 4.167 22 C 0.069 3.931 23 Cl -0.098 7.098 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.410 0.590 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.293 0.707 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 7.410 0.035 7.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.139 4.139 3 C -0.176 4.176 4 C 0.021 3.979 5 N -0.874 5.874 6 S 2.794 3.206 7 O -0.960 6.960 8 O -0.977 6.977 9 C -0.886 4.886 10 C -0.009 4.009 11 C -0.257 4.257 12 C 0.137 3.863 13 C -0.450 4.450 14 H 0.111 0.889 15 C -0.153 4.153 16 N -0.380 5.380 17 Si 0.743 3.257 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.184 1.184 21 C -0.188 4.188 22 C 0.041 3.959 23 Cl -0.070 7.070 24 H 0.121 0.879 25 H 0.116 0.884 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.243 0.757 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.845 7.705 0.102 7.752 hybrid contribution -1.049 -0.805 0.598 1.451 sum -1.894 6.900 0.700 7.190 Atomic orbital electron populations 1.23832 0.95216 1.02110 1.00445 1.21981 0.95537 0.95809 1.00590 1.20868 1.00308 0.94280 1.02109 1.21182 0.99974 0.93983 0.82767 1.55614 1.62502 1.56424 1.12859 1.01192 0.73379 0.73358 0.72670 1.93535 1.48409 1.83985 1.70038 1.93478 1.86587 1.87018 1.30650 1.29089 1.37892 1.21529 1.00100 1.20185 0.91815 0.91923 0.96955 1.21114 1.11379 0.98046 0.95196 1.17715 0.86070 0.91827 0.90665 1.19966 1.26225 0.95425 1.03354 0.88887 1.26201 0.93237 0.99122 0.96785 1.69783 1.21575 1.29101 1.17532 0.86125 0.79967 0.80746 0.78815 1.18160 1.19728 1.18389 1.21286 1.04423 0.92279 1.00815 1.20088 0.98544 0.89380 0.87922 1.98312 1.93523 1.48105 1.67015 0.87931 0.88430 0.91482 0.92008 0.91625 0.89967 0.89612 0.75669 0.86444 0.87500 0.89523 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 13.89 29.01 0.40 -1.69 16 2 C -0.14 -1.77 5.45 -101.07 -0.55 -2.32 16 3 C -0.12 -1.29 10.03 36.01 0.36 -0.93 16 4 C 0.15 2.30 4.26 -5.19 -0.02 2.28 16 5 N -1.12 -18.09 5.99 -11.65 -0.07 -18.16 16 6 S 2.70 53.44 5.44 -107.50 -0.58 52.85 16 7 O -0.97 -21.10 15.94 -57.17 -0.91 -22.02 16 8 O -0.99 -20.88 16.94 -57.17 -0.97 -21.85 16 9 C -0.79 -17.43 5.91 -39.25 -0.23 -17.66 16 10 C 0.01 0.25 9.52 -39.67 -0.38 -0.13 16 11 C -0.24 -5.36 9.79 -38.87 -0.38 -5.74 16 12 C 0.14 3.43 5.57 -106.83 -0.60 2.83 16 13 C -0.42 -9.82 9.05 -37.74 -0.34 -10.16 16 14 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16 15 C 0.07 1.53 5.14 -17.34 -0.09 1.44 16 16 N -0.76 -17.12 10.96 55.55 0.61 -16.51 16 17 Si 0.92 16.17 29.59 -169.99 -5.03 11.14 16 18 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 19 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 20 H -0.26 -4.50 7.11 56.52 0.40 -4.09 16 21 C -0.17 -4.03 8.47 -38.84 -0.33 -4.36 16 22 C 0.07 1.56 6.08 -39.57 -0.24 1.32 16 23 Cl -0.10 -1.95 20.53 -51.86 -1.06 -3.02 16 24 H 0.10 1.26 7.99 -52.48 -0.42 0.84 16 25 H 0.10 0.95 8.04 -52.49 -0.42 0.53 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.56 8.06 -51.93 -0.42 0.15 16 28 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 29 H 0.08 1.38 5.98 -51.93 -0.31 1.07 16 30 H 0.09 1.41 5.82 -51.93 -0.30 1.11 16 31 H 0.41 5.64 8.64 -34.47 -0.30 5.35 16 32 H 0.12 2.35 7.31 -52.49 -0.38 1.96 16 33 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.29 5.94 8.30 -40.82 -0.34 5.61 16 35 H 0.13 3.27 6.16 -52.48 -0.32 2.95 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -27.60 318.36 -9.31 -36.91 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -3.69 Total: 10.98 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: -2.39 Total: -35.13 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.54 Total: -34.67 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -1.88 Total: -43.86 kcal Atomic # 14 Polarization: 16.17 SS G_CDS: -5.03 Total: 11.14 kcal Atomic # 16 Polarization: 53.44 SS G_CDS: -0.58 Total: 52.85 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -1.06 Total: -3.02 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.60 -9.31 -36.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451424038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.865 kcal (2) G-P(sol) polarization free energy of solvation -27.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds