Wall clock time and date at job start Tue Mar 31 2020 10:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99702 * 2 1 4 4 C 1.50699 * 120.00033 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47008 * 94.99833 * 4 2 1 6 6 S 1.65601 * 119.99744 * 164.99789 * 5 4 2 7 7 O 1.42104 * 106.40284 * 311.45833 * 6 5 4 8 8 O 1.42092 * 106.40229 * 178.54056 * 6 5 4 9 9 C 1.76201 * 107.21800 * 65.00068 * 6 5 4 10 10 C 1.38629 * 119.75664 * 115.25353 * 9 6 5 11 11 C 1.37601 * 120.26043 * 180.29453 * 10 9 6 12 12 C 1.40740 * 119.77192 * 359.72858 * 11 10 9 13 13 C 1.41402 * 120.23671 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99902 * 24.38233 * 13 12 11 15 15 C 1.39942 * 120.00052 * 204.37458 * 13 12 11 16 16 N 1.30829 * 119.99902 * 17.86558 * 15 13 12 17 17 Si 1.86796 * 120.00336 * 197.86037 * 15 13 12 18 18 H 1.48507 * 109.47003 * 60.00211 * 17 15 13 19 19 H 1.48498 * 109.47335 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47450 * 300.00363 * 17 15 13 21 21 C 1.40671 * 119.52576 * 359.97438 * 12 11 10 22 22 C 1.37757 * 119.73319 * 0.02562 * 21 12 11 23 23 Cl 1.73593 * 119.89142 * 179.97438 * 22 21 12 24 24 H 1.08004 * 119.99716 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.00269 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46884 * 270.00310 * 3 2 1 27 27 H 1.08998 * 109.47418 * 29.99885 * 3 2 1 28 28 H 1.09000 * 109.47296 * 150.00402 * 3 2 1 29 29 H 1.08997 * 109.47130 * 334.99350 * 4 2 1 30 30 H 1.09004 * 109.46816 * 214.99762 * 4 2 1 31 31 H 0.96990 * 119.99906 * 345.00128 * 5 4 2 32 32 H 1.07995 * 119.87162 * 0.02562 * 10 9 6 33 33 H 1.08002 * 120.11530 * 179.70100 * 11 10 9 34 34 H 0.97000 * 119.99707 * 180.02562 * 16 15 13 35 35 H 1.08004 * 120.13404 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4119 -1.6672 -1.3767 6 16 3.5473 -2.8383 -1.6626 7 8 4.6651 -2.5217 -0.8443 8 8 3.6323 -2.9788 -3.0740 9 6 2.8962 -4.3566 -1.0497 10 6 2.6195 -5.3916 -1.9296 11 6 2.1051 -6.5795 -1.4630 12 6 1.8651 -6.7443 -0.0860 13 6 1.3373 -7.9610 0.4042 14 1 1.4766 -8.8743 -0.1551 15 6 0.6345 -7.9819 1.6142 16 7 0.1616 -6.8697 2.1152 17 14 0.3715 -9.5976 2.5139 18 1 1.6880 -10.1951 2.8534 19 1 -0.3968 -9.3506 3.7605 20 1 -0.3862 -10.5317 1.6429 21 6 2.1551 -5.6902 0.7992 22 6 2.6696 -4.5095 0.3105 23 17 3.0283 -3.2058 1.3991 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 2.2450 1.6198 -1.0277 27 1 1.4744 2.0648 0.5138 28 1 3.0159 1.1749 0.5138 29 1 1.4386 -2.0856 0.4335 30 1 2.9742 -1.1990 0.5889 31 1 1.9776 -1.2209 -2.1204 32 1 2.8043 -5.2635 -2.9858 33 1 1.8859 -7.3825 -2.1511 34 1 -0.3252 -6.8841 2.9540 35 1 1.9752 -5.8061 1.8578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451424038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:32 Heat of formation + Delta-G solvation = -63.854655 kcal Electronic energy + Delta-G solvation = -22034.538076 eV Core-core repulsion = 18570.814721 eV Total energy + Delta-G solvation = -3463.723355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.64367 -38.41814 -37.84369 -37.35352 -36.78324 -35.82808 -34.01942 -32.08808 -31.25012 -28.16450 -27.78358 -26.82373 -23.56935 -23.09321 -20.59319 -19.87857 -19.59263 -18.72635 -18.10121 -17.34005 -17.26040 -16.24993 -16.15112 -15.73831 -15.60794 -15.28633 -15.03986 -14.48838 -14.22543 -14.12370 -13.92814 -13.50295 -13.35505 -13.12414 -13.10653 -13.02136 -12.95715 -12.72126 -12.57376 -12.31019 -12.19507 -12.03980 -11.83061 -11.58149 -11.26094 -11.01797 -10.36490 -10.07784 -9.88853 -9.47945 -8.94451 -6.73861 -0.37534 0.29675 0.84246 1.14659 1.25458 1.36326 1.44254 1.51052 2.09383 2.26567 2.45975 2.84714 3.36321 3.60002 3.80076 4.01467 4.21231 4.44271 4.59060 4.66033 4.78402 4.80538 4.81670 4.91082 4.96966 5.03740 5.05561 5.15644 5.22659 5.38687 5.52549 5.67064 5.78637 5.91083 5.99035 6.17107 6.30016 6.56495 6.62293 7.99416 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.004867 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.484528 B = 5751.268850 C = 6577.642413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.151 4.151 3 C -0.118 4.118 4 C 0.142 3.858 5 N -1.103 6.103 6 S 2.721 3.279 7 O -0.989 6.989 8 O -0.998 6.998 9 C -0.807 4.807 10 C 0.005 3.995 11 C -0.250 4.250 12 C 0.114 3.886 13 C -0.447 4.447 14 H 0.101 0.899 15 C 0.035 3.965 16 N -0.786 5.786 17 Si 0.992 3.008 18 H -0.258 1.258 19 H -0.264 1.264 20 H -0.252 1.252 21 C -0.191 4.191 22 C 0.062 3.938 23 Cl -0.078 7.078 24 H 0.093 0.907 25 H 0.125 0.875 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.424 0.576 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.302 0.698 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 8.062 0.168 8.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.174 4.174 4 C 0.017 3.983 5 N -0.863 5.863 6 S 2.815 3.185 7 O -0.979 6.979 8 O -0.989 6.989 9 C -0.899 4.899 10 C -0.015 4.015 11 C -0.271 4.271 12 C 0.110 3.890 13 C -0.473 4.473 14 H 0.119 0.881 15 C -0.186 4.186 16 N -0.408 5.408 17 Si 0.811 3.189 18 H -0.182 1.182 19 H -0.188 1.188 20 H -0.176 1.176 21 C -0.212 4.212 22 C 0.034 3.966 23 Cl -0.049 7.049 24 H 0.111 0.889 25 H 0.143 0.857 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.260 0.740 32 H 0.153 0.847 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.637 8.354 0.220 8.515 hybrid contribution -0.840 -0.898 0.557 1.350 sum -2.477 7.456 0.776 7.895 Atomic orbital electron populations 1.24011 0.94853 1.03012 0.98384 1.21923 0.95860 0.95155 1.02366 1.20895 1.00075 0.93547 1.02914 1.21151 0.99733 0.95486 0.81905 1.55277 1.61989 1.55201 1.13876 1.00490 0.73241 0.72910 0.71876 1.93507 1.49778 1.84098 1.70499 1.93453 1.86941 1.87232 1.31262 1.29500 1.37414 1.23015 1.00012 1.20460 0.91422 0.91729 0.97912 1.21352 1.11727 0.98907 0.95067 1.18076 0.86900 0.92532 0.91500 1.20302 1.26839 0.95477 1.04710 0.88086 1.27050 0.92295 1.02440 0.96837 1.69815 1.21758 1.31089 1.18126 0.85070 0.79800 0.76311 0.77725 1.18198 1.18800 1.17615 1.21280 1.06157 0.93314 1.00417 1.20241 0.97896 0.89679 0.88753 1.98311 1.93352 1.46716 1.66569 0.88881 0.85670 0.90622 0.89959 0.92260 0.91419 0.90521 0.74026 0.84696 0.85978 0.88625 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 13.89 67.78 0.94 -2.54 16 2 C -0.15 -3.61 5.45 -16.49 -0.09 -3.70 16 3 C -0.12 -2.26 10.03 71.24 0.71 -1.55 16 4 C 0.14 4.37 4.26 85.63 0.36 4.74 16 5 N -1.10 -34.64 5.99 -190.79 -1.14 -35.78 16 6 S 2.72 106.35 5.44 -56.49 -0.31 106.04 16 7 O -0.99 -42.65 15.94 -128.00 -2.04 -44.69 16 8 O -1.00 -41.28 16.94 -128.00 -2.17 -43.44 16 9 C -0.81 -35.75 5.91 22.48 0.13 -35.61 16 10 C 0.00 0.21 9.52 22.21 0.21 0.42 16 11 C -0.25 -11.49 9.79 22.73 0.22 -11.27 16 12 C 0.11 5.65 5.57 -21.29 -0.12 5.54 16 13 C -0.45 -21.03 9.05 23.46 0.21 -20.82 16 14 H 0.10 4.41 7.91 -2.91 -0.02 4.38 16 15 C 0.03 1.52 5.14 85.26 0.44 1.96 16 16 N -0.79 -35.85 10.96 21.83 0.24 -35.61 16 17 Si 0.99 32.50 29.59 68.60 2.03 34.53 16 18 H -0.26 -8.41 7.11 99.48 0.71 -7.71 16 19 H -0.26 -8.19 7.11 99.48 0.71 -7.49 16 20 H -0.25 -7.93 7.11 99.48 0.71 -7.22 16 21 C -0.19 -9.47 8.47 22.75 0.19 -9.27 16 22 C 0.06 2.88 6.08 22.28 0.14 3.02 16 23 Cl -0.08 -3.14 20.53 -2.72 -0.06 -3.19 16 24 H 0.09 2.15 7.99 -2.91 -0.02 2.13 16 25 H 0.13 1.98 8.04 -2.91 -0.02 1.96 16 26 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.08 1.24 8.06 -2.39 -0.02 1.22 16 28 H 0.06 1.20 8.08 -2.39 -0.02 1.19 16 29 H 0.07 2.27 5.98 -2.39 -0.01 2.26 16 30 H 0.08 2.49 5.82 -2.38 -0.01 2.47 16 31 H 0.42 10.99 8.64 -96.75 -0.84 10.16 16 32 H 0.14 5.33 7.31 -2.91 -0.02 5.31 16 33 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 34 H 0.30 12.26 8.30 -92.71 -0.77 11.49 16 35 H 0.12 6.23 6.16 -2.91 -0.02 6.22 16 Total: -1.00 -58.78 318.36 0.21 -58.57 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.30 Total: 32.67 kcal Atomic # 6 Polarization: -72.45 SS G_CDS: 3.36 Total: -69.09 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -0.90 Total: -71.39 kcal Atomic # 8 Polarization: -83.93 SS G_CDS: -4.21 Total: -88.14 kcal Atomic # 14 Polarization: 32.50 SS G_CDS: 2.03 Total: 34.53 kcal Atomic # 16 Polarization: 106.35 SS G_CDS: -0.31 Total: 106.04 kcal Atomic # 17 Polarization: -3.14 SS G_CDS: -0.06 Total: -3.19 kcal Total: -58.78 0.21 -58.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451424038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.283 kcal (2) G-P(sol) polarization free energy of solvation -58.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds