Wall clock time and date at job start Tue Mar 31 2020 10:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47227 * 299.53472 * 3 2 1 5 5 C 1.36939 * 119.99512 * 273.01530 * 4 3 2 6 6 H 1.08004 * 119.99478 * 187.51177 * 5 4 3 7 7 C 1.38809 * 120.00377 * 7.51788 * 5 4 3 8 8 N 1.31618 * 120.00166 * 27.06414 * 7 5 4 9 9 Si 1.86799 * 119.99730 * 207.06617 * 7 5 4 10 10 H 1.48501 * 109.47513 * 59.99902 * 9 7 5 11 11 H 1.48501 * 109.47035 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47031 * 299.99538 * 9 7 5 13 13 S 1.65594 * 119.99930 * 93.01849 * 4 3 2 14 14 O 1.42106 * 104.27649 * 333.92391 * 13 4 3 15 15 O 1.42100 * 104.27639 * 206.07332 * 13 4 3 16 16 C 1.81395 * 104.45103 * 90.00118 * 13 4 3 17 17 C 1.50700 * 109.47367 * 179.97438 * 16 13 4 18 18 C 1.38226 * 119.98924 * 270.23433 * 17 16 13 19 19 C 1.38185 * 120.05460 * 180.22834 * 18 17 16 20 20 C 1.38497 * 120.02004 * 359.78868 * 19 18 17 21 21 F 1.35111 * 120.01251 * 179.97438 * 20 19 18 22 22 C 1.38400 * 119.97951 * 359.97438 * 20 19 18 23 23 C 1.38442 * 119.94369 * 0.02562 * 22 20 19 24 24 F 1.35103 * 120.00881 * 179.97438 * 23 22 20 25 25 H 4.40645 * 5.51473 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.46953 * 179.53597 * 3 2 1 27 27 H 1.08994 * 109.47540 * 59.53517 * 3 2 1 28 28 H 0.96998 * 119.99814 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47537 * 60.00039 * 16 13 4 30 30 H 1.09006 * 109.47009 * 299.99937 * 16 13 4 31 31 H 1.08000 * 119.97525 * 359.97385 * 18 17 16 32 32 H 1.07991 * 119.99109 * 179.76455 * 19 18 17 33 33 H 1.07994 * 120.02915 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6800 1.2018 5 6 3.3038 0.0221 2.3653 6 1 3.7766 -0.4473 3.2153 7 6 2.8674 1.3369 2.4522 8 7 1.8688 1.7499 1.7009 9 14 3.6975 2.5201 3.6355 10 1 5.1357 2.6419 3.2865 11 1 3.0504 3.8532 3.5379 12 1 3.5665 2.0062 5.0227 13 16 3.4826 -2.2983 1.1531 14 8 2.6600 -2.8023 0.1097 15 8 3.3128 -2.7337 2.4950 16 6 5.2314 -2.3712 0.6766 17 6 5.6712 -3.8104 0.5983 18 6 6.1842 -4.4380 1.7180 19 6 6.5922 -5.7563 1.6464 20 6 6.4835 -6.4516 0.4536 21 9 6.8830 -7.7404 0.3837 22 6 5.9654 -5.8258 -0.6669 23 6 5.5570 -4.5050 -0.5939 24 9 5.0516 -3.8927 -1.6870 25 1 -1.0499 0.0000 0.0003 26 1 3.0089 1.0284 -0.0083 27 1 3.0097 -0.5202 -0.8857 28 1 1.5641 2.6688 1.7614 29 1 5.8327 -1.8479 1.4201 30 1 5.3630 -1.8972 -0.2961 31 1 6.2700 -3.8964 2.6484 32 1 6.9964 -6.2445 2.5208 33 1 5.8799 -6.3673 -1.5973 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490841312.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:12 Heat of formation + Delta-G solvation = -56.151970 kcal Electronic energy + Delta-G solvation = -23987.398460 eV Core-core repulsion = 19972.212438 eV Total energy + Delta-G solvation = -4015.186022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -49.07984 -48.90290 -38.95629 -36.34783 -36.00627 -34.79450 -32.62236 -31.94875 -31.13526 -30.85507 -26.83680 -26.57530 -23.92849 -23.25793 -21.92719 -18.63105 -18.21681 -17.97409 -17.26177 -17.09626 -16.55264 -16.10126 -15.95111 -15.61483 -15.34044 -14.92394 -14.79720 -14.52949 -14.38232 -13.92238 -13.58960 -13.31247 -13.01295 -12.48127 -12.18881 -12.14308 -11.86445 -11.82959 -11.41067 -11.33047 -11.02080 -10.99215 -10.90228 -10.58956 -10.40991 -10.28867 -9.72703 -9.15205 -9.11331 -8.77899 -8.57222 -8.24187 -6.53016 -3.91264 0.67810 0.93610 1.31755 3.10757 3.16521 3.17065 3.29769 3.57616 3.81081 4.05864 4.27643 4.33569 4.37812 4.49339 4.59407 4.67560 4.74197 4.96571 5.03731 5.21125 5.61529 5.65245 5.69401 5.73867 5.85131 5.95899 6.05854 6.07272 6.19026 6.64583 6.69480 6.92281 7.20880 7.31082 8.13894 8.64037 9.00685 9.04535 10.40802 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.004482 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.299057 B = 6246.085422 C = 7011.926316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.095 4.095 3 C 0.244 3.756 4 N -0.817 5.817 5 C -0.294 4.294 6 H 0.118 0.882 7 C 0.045 3.955 8 N -0.816 5.816 9 Si 0.905 3.095 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.270 1.270 13 S 2.527 3.473 14 O -0.969 6.969 15 O -0.962 6.962 16 C -0.627 4.627 17 C -0.107 4.107 18 C -0.059 4.059 19 C -0.159 4.159 20 C 0.118 3.882 21 F -0.134 7.134 22 C -0.189 4.189 23 C 0.132 3.868 24 F -0.120 7.120 25 H 0.198 0.802 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.275 0.725 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.909 -6.682 -2.845 11.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.098 4.098 3 C 0.119 3.881 4 N -0.644 5.644 5 C -0.433 4.433 6 H 0.136 0.864 7 C -0.167 4.167 8 N -0.454 5.454 9 Si 0.730 3.270 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.195 1.195 13 S 2.619 3.381 14 O -0.958 6.958 15 O -0.951 6.951 16 C -0.743 4.743 17 C -0.110 4.110 18 C -0.078 4.078 19 C -0.178 4.178 20 C 0.098 3.902 21 F -0.113 7.113 22 C -0.209 4.209 23 C 0.111 3.889 24 F -0.098 7.098 25 H 0.215 0.785 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.154 0.846 30 H 0.145 0.855 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.339 -7.410 -2.853 11.514 hybrid contribution 0.759 0.999 0.178 1.267 sum 9.098 -6.411 -2.675 11.446 Atomic orbital electron populations 1.24160 0.95293 1.05208 1.03641 1.22728 0.93971 0.96194 0.96906 1.17830 0.85263 0.99494 0.85509 1.53947 1.66239 1.30005 1.14228 1.19520 1.38594 0.95939 0.89221 0.86432 1.25247 0.95130 0.97708 0.98598 1.70236 1.18529 1.17796 1.38798 0.86334 0.80070 0.79562 0.80996 1.19609 1.20751 1.19456 1.10412 0.78977 0.74375 0.74350 1.93480 1.64668 1.78951 1.58711 1.93434 1.85535 1.80826 1.35320 1.30380 1.34770 0.96614 1.12562 1.19387 1.03097 0.95524 0.92995 1.20959 0.94775 0.93835 0.98232 1.21185 1.04067 0.95238 0.97291 1.17274 0.99363 0.79205 0.94321 1.91516 1.88316 1.34454 1.96978 1.20981 1.05186 0.94498 1.00243 1.17178 0.97542 0.90692 0.83445 1.91559 1.84234 1.82588 1.51454 0.78509 0.88189 0.91644 0.91398 0.84567 0.85542 0.83094 0.83697 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.92 19.25 29.55 0.57 -5.35 16 2 C -0.10 -2.28 11.12 -37.12 -0.41 -2.69 16 3 C 0.24 5.42 5.03 -6.83 -0.03 5.39 16 4 N -0.82 -18.91 2.81 -62.77 -0.18 -19.08 16 5 C -0.29 -7.06 9.28 -15.06 -0.14 -7.20 16 6 H 0.12 2.75 7.40 -52.48 -0.39 2.37 16 7 C 0.04 1.05 4.86 -17.43 -0.08 0.97 16 8 N -0.82 -19.90 9.10 55.49 0.50 -19.40 16 9 Si 0.91 18.01 29.63 -169.99 -5.04 12.97 16 10 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 11 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 12 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 13 S 2.53 55.24 5.32 -107.50 -0.57 54.67 16 14 O -0.97 -23.39 16.96 -57.54 -0.98 -24.37 16 15 O -0.96 -23.40 16.88 -57.54 -0.97 -24.37 16 16 C -0.63 -10.50 6.13 36.01 0.22 -10.28 16 17 C -0.11 -1.71 5.15 -104.55 -0.54 -2.25 16 18 C -0.06 -0.81 9.70 -39.61 -0.38 -1.20 16 19 C -0.16 -1.91 10.03 -39.51 -0.40 -2.31 16 20 C 0.12 1.50 7.30 -39.43 -0.29 1.22 16 21 F -0.13 -1.64 17.27 2.25 0.04 -1.60 16 22 C -0.19 -2.53 10.01 -39.45 -0.39 -2.92 16 23 C 0.13 2.07 7.24 -39.43 -0.29 1.79 16 24 F -0.12 -2.01 16.48 2.25 0.04 -1.97 16 25 H 0.20 3.63 7.80 -54.10 -0.42 3.21 16 26 H 0.10 2.18 6.52 -51.93 -0.34 1.84 16 27 H 0.07 1.27 7.68 -51.93 -0.40 0.87 16 28 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 29 H 0.14 1.99 8.09 -51.93 -0.42 1.57 16 30 H 0.13 1.94 7.64 -51.92 -0.40 1.55 16 31 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 318.44 15.07 4.80 4.80 Total: -1.00 -30.09 318.44 -7.29 -37.38 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -2.77 Total: 5.81 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -2.17 Total: -24.85 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.33 Total: -38.48 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -1.95 Total: -48.74 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.08 Total: -3.58 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.04 Total: 12.97 kcal Atomic # 16 Polarization: 55.24 SS G_CDS: -0.57 Total: 54.67 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.09 -7.29 -37.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490841312.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.771 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds