Wall clock time and date at job start Tue Mar 31 2020 10:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47227 * 299.53472 * 3 2 1 5 5 C 1.36939 * 119.99512 * 273.01530 * 4 3 2 6 6 H 1.08004 * 119.99478 * 187.51177 * 5 4 3 7 7 C 1.38809 * 120.00377 * 7.51788 * 5 4 3 8 8 N 1.31618 * 120.00166 * 27.06414 * 7 5 4 9 9 Si 1.86799 * 119.99730 * 207.06617 * 7 5 4 10 10 H 1.48501 * 109.47513 * 59.99902 * 9 7 5 11 11 H 1.48501 * 109.47035 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47031 * 299.99538 * 9 7 5 13 13 S 1.65594 * 119.99930 * 93.01849 * 4 3 2 14 14 O 1.42106 * 104.27649 * 333.92391 * 13 4 3 15 15 O 1.42100 * 104.27639 * 206.07332 * 13 4 3 16 16 C 1.81395 * 104.45103 * 90.00118 * 13 4 3 17 17 C 1.50700 * 109.47367 * 179.97438 * 16 13 4 18 18 C 1.38226 * 119.98924 * 270.23433 * 17 16 13 19 19 C 1.38185 * 120.05460 * 180.22834 * 18 17 16 20 20 C 1.38497 * 120.02004 * 359.78868 * 19 18 17 21 21 F 1.35111 * 120.01251 * 179.97438 * 20 19 18 22 22 C 1.38400 * 119.97951 * 359.97438 * 20 19 18 23 23 C 1.38442 * 119.94369 * 0.02562 * 22 20 19 24 24 F 1.35103 * 120.00881 * 179.97438 * 23 22 20 25 25 H 4.40645 * 5.51473 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.46953 * 179.53597 * 3 2 1 27 27 H 1.08994 * 109.47540 * 59.53517 * 3 2 1 28 28 H 0.96998 * 119.99814 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47537 * 60.00039 * 16 13 4 30 30 H 1.09006 * 109.47009 * 299.99937 * 16 13 4 31 31 H 1.08000 * 119.97525 * 359.97385 * 18 17 16 32 32 H 1.07991 * 119.99109 * 179.76455 * 19 18 17 33 33 H 1.07994 * 120.02915 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6800 1.2018 5 6 3.3038 0.0221 2.3653 6 1 3.7766 -0.4473 3.2153 7 6 2.8674 1.3369 2.4522 8 7 1.8688 1.7499 1.7009 9 14 3.6975 2.5201 3.6355 10 1 5.1357 2.6419 3.2865 11 1 3.0504 3.8532 3.5379 12 1 3.5665 2.0062 5.0227 13 16 3.4826 -2.2983 1.1531 14 8 2.6600 -2.8023 0.1097 15 8 3.3128 -2.7337 2.4950 16 6 5.2314 -2.3712 0.6766 17 6 5.6712 -3.8104 0.5983 18 6 6.1842 -4.4380 1.7180 19 6 6.5922 -5.7563 1.6464 20 6 6.4835 -6.4516 0.4536 21 9 6.8830 -7.7404 0.3837 22 6 5.9654 -5.8258 -0.6669 23 6 5.5570 -4.5050 -0.5939 24 9 5.0516 -3.8927 -1.6870 25 1 -1.0499 0.0000 0.0003 26 1 3.0089 1.0284 -0.0083 27 1 3.0097 -0.5202 -0.8857 28 1 1.5641 2.6688 1.7614 29 1 5.8327 -1.8479 1.4201 30 1 5.3630 -1.8972 -0.2961 31 1 6.2700 -3.8964 2.6484 32 1 6.9964 -6.2445 2.5208 33 1 5.8799 -6.3673 -1.5973 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490841312.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:11 Heat of formation + Delta-G solvation = -74.889724 kcal Electronic energy + Delta-G solvation = -23988.210990 eV Core-core repulsion = 19972.212438 eV Total energy + Delta-G solvation = -4015.998552 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -50.15184 -50.08673 -40.08263 -38.06223 -37.88358 -36.79239 -33.93676 -33.55894 -32.80207 -31.92783 -28.24423 -28.19347 -25.60277 -24.35359 -23.11825 -20.33990 -19.69518 -19.32787 -18.89937 -18.40419 -18.17661 -17.59027 -17.09179 -16.87201 -16.55545 -16.52517 -16.31558 -16.04147 -15.54203 -15.28080 -14.99428 -14.92124 -14.35917 -14.12760 -13.48901 -13.48761 -13.39941 -13.15691 -13.02951 -13.02135 -12.73460 -12.58219 -12.47812 -12.28351 -12.05012 -11.93430 -11.34248 -10.90577 -10.49901 -10.20332 -10.01911 -9.67729 -8.06386 -5.71230 -0.79973 -0.12895 -0.06691 1.52864 1.54731 1.61599 1.84729 2.20149 2.43537 2.51790 2.67721 2.72008 2.94415 3.12148 3.20335 3.29186 3.37096 3.52595 3.79779 3.96197 4.02963 4.21439 4.39924 4.45927 4.62707 4.75354 4.82736 4.92209 4.98654 5.04248 5.28662 5.55721 5.61347 5.71207 6.49358 7.09329 7.28946 7.42360 8.90580 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.004482 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.299057 B = 6246.085422 C = 7011.926316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.133 4.133 3 C 0.251 3.749 4 N -0.863 5.863 5 C -0.352 4.352 6 H 0.109 0.891 7 C 0.002 3.998 8 N -0.882 5.882 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.291 1.291 12 H -0.277 1.277 13 S 2.585 3.415 14 O -0.994 6.994 15 O -0.987 6.987 16 C -0.575 4.575 17 C -0.146 4.146 18 C -0.055 4.055 19 C -0.149 4.149 20 C 0.130 3.870 21 F -0.127 7.127 22 C -0.190 4.190 23 C 0.119 3.881 24 F -0.131 7.131 25 H 0.226 0.774 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.263 0.737 29 H 0.174 0.826 30 H 0.154 0.846 31 H 0.172 0.828 32 H 0.180 0.820 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.106 -9.988 -3.141 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.136 4.136 3 C 0.125 3.875 4 N -0.693 5.693 5 C -0.481 4.481 6 H 0.126 0.874 7 C -0.201 4.201 8 N -0.520 5.520 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.217 1.217 12 H -0.203 1.203 13 S 2.683 3.317 14 O -0.984 6.984 15 O -0.977 6.977 16 C -0.703 4.703 17 C -0.149 4.149 18 C -0.074 4.074 19 C -0.168 4.168 20 C 0.110 3.890 21 F -0.106 7.106 22 C -0.210 4.210 23 C 0.099 3.901 24 F -0.109 7.109 25 H 0.243 0.757 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.192 0.808 30 H 0.172 0.828 31 H 0.190 0.810 32 H 0.198 0.802 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 11.413 -10.536 -3.028 15.824 hybrid contribution 0.111 1.120 0.063 1.128 sum 11.524 -9.415 -2.964 15.174 Atomic orbital electron populations 1.25037 0.96502 1.04709 1.03270 1.23734 0.95584 0.96804 0.97453 1.17956 0.84261 0.99572 0.85679 1.53066 1.74638 1.26497 1.15088 1.19349 1.41103 0.95895 0.91728 0.87374 1.25751 0.95350 0.99092 0.99948 1.70353 1.21697 1.17259 1.42729 0.85432 0.79456 0.77370 0.78669 1.18409 1.21701 1.20288 1.05444 0.79574 0.73225 0.73460 1.93501 1.65830 1.79544 1.59570 1.93458 1.86410 1.81156 1.36685 1.29633 1.25675 0.99616 1.15411 1.19396 1.06564 0.94470 0.94488 1.21305 0.93392 0.94595 0.98072 1.21560 1.02546 0.94486 0.98194 1.17426 0.97891 0.79301 0.94348 1.91550 1.88015 1.34074 1.96943 1.21209 1.04415 0.93729 1.01600 1.17430 0.97940 0.91603 0.83148 1.91542 1.84517 1.82862 1.51977 0.75700 0.88369 0.89651 0.92713 0.80819 0.82785 0.81020 0.80215 0.81144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.92 19.25 74.32 1.43 -11.49 16 2 C -0.13 -6.66 11.12 31.12 0.35 -6.32 16 3 C 0.25 11.51 5.03 84.57 0.43 11.94 16 4 N -0.86 -40.57 2.81 -352.52 -0.99 -41.56 16 5 C -0.35 -17.65 9.28 84.03 0.78 -16.87 16 6 H 0.11 5.29 7.40 -2.91 -0.02 5.27 16 7 C 0.00 0.11 4.86 84.86 0.41 0.52 16 8 N -0.88 -46.52 9.10 21.65 0.20 -46.33 16 9 Si 0.97 39.51 29.63 68.60 2.03 41.54 16 10 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 11 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 13 S 2.59 108.80 5.32 -56.49 -0.30 108.50 16 14 O -0.99 -46.67 16.96 -127.65 -2.16 -48.83 16 15 O -0.99 -46.72 16.88 -127.65 -2.16 -48.87 16 16 C -0.58 -16.75 6.13 71.24 0.44 -16.31 16 17 C -0.15 -3.96 5.15 -19.82 -0.10 -4.06 16 18 C -0.05 -1.19 9.70 22.25 0.22 -0.98 16 19 C -0.15 -2.71 10.03 22.32 0.22 -2.49 16 20 C 0.13 2.62 7.30 22.37 0.16 2.79 16 21 F -0.13 -2.47 17.27 44.97 0.78 -1.69 16 22 C -0.19 -4.20 10.01 22.36 0.22 -3.97 16 23 C 0.12 3.25 7.24 22.37 0.16 3.41 16 24 F -0.13 -3.94 16.48 44.97 0.74 -3.19 16 25 H 0.23 8.53 7.80 -4.42 -0.03 8.49 16 26 H 0.10 4.56 6.52 -2.39 -0.02 4.55 16 27 H 0.09 3.34 7.68 -2.39 -0.02 3.32 16 28 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 29 H 0.17 4.13 8.09 -2.39 -0.02 4.11 16 30 H 0.15 3.99 7.64 -2.39 -0.02 3.98 16 31 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 32 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -69.07 318.44 4.01 -65.06 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.15 Total: 19.21 kcal Atomic # 6 Polarization: -48.56 SS G_CDS: 4.72 Total: -43.84 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -0.79 Total: -87.88 kcal Atomic # 8 Polarization: -93.39 SS G_CDS: -4.32 Total: -97.70 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 1.52 Total: -4.89 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: 108.80 SS G_CDS: -0.30 Total: 108.50 kcal Total: -69.07 4.01 -65.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490841312.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.828 kcal (2) G-P(sol) polarization free energy of solvation -69.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds