Wall clock time and date at job start Tue Mar 31 2020 10:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46972 * 139.83975 * 3 2 1 5 5 C 1.36935 * 119.99480 * 273.29025 * 4 3 2 6 6 H 1.08003 * 119.99752 * 186.68302 * 5 4 3 7 7 C 1.38805 * 120.00114 * 6.68014 * 5 4 3 8 8 N 1.31619 * 120.00521 * 25.18493 * 7 5 4 9 9 Si 1.86808 * 119.99845 * 205.18399 * 7 5 4 10 10 H 1.48500 * 109.47226 * 90.00171 * 9 7 5 11 11 H 1.48498 * 109.47192 * 210.00176 * 9 7 5 12 12 H 1.48498 * 109.47131 * 330.00206 * 9 7 5 13 13 S 1.65599 * 120.00036 * 93.29174 * 4 3 2 14 14 O 1.42094 * 106.40243 * 156.45929 * 13 4 3 15 15 O 1.42105 * 106.40299 * 23.53840 * 13 4 3 16 16 C 1.76201 * 107.21785 * 270.00077 * 13 4 3 17 17 C 1.38420 * 120.02986 * 89.99749 * 16 13 4 18 18 F 1.35098 * 120.00621 * 0.02562 * 17 16 13 19 19 C 1.38462 * 119.97676 * 180.02562 * 17 16 13 20 20 C 1.38207 * 120.02694 * 359.97438 * 19 17 16 21 21 C 1.50702 * 119.97633 * 179.97438 * 20 19 17 22 22 C 1.38210 * 120.05105 * 0.28010 * 20 19 17 23 23 C 1.38417 * 120.02375 * 270.02659 * 16 13 4 24 24 F 1.35102 * 120.01387 * 359.95315 * 23 16 13 25 25 H 4.40643 * 5.51489 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47722 * 19.83541 * 3 2 1 27 27 H 1.09007 * 109.46793 * 259.83409 * 3 2 1 28 28 H 0.96994 * 120.00280 * 179.97438 * 8 7 5 29 29 H 1.08000 * 119.98685 * 179.97438 * 19 17 16 30 30 H 1.08996 * 109.47396 * 90.00186 * 21 20 19 31 31 H 1.09000 * 109.47104 * 330.00440 * 21 20 19 32 32 H 1.08998 * 109.47509 * 210.00474 * 21 20 19 33 33 H 1.07992 * 119.98773 * 179.70281 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.0565 -0.8908 5 6 3.2979 0.8036 -2.2266 6 1 3.7580 1.5443 -2.8639 7 6 2.8730 -0.4047 -2.7615 8 7 1.9108 -1.0830 -2.1730 9 14 3.6669 -1.0683 -4.3169 10 1 4.8276 -1.9209 -3.9552 11 1 2.6760 -1.8757 -5.0727 12 1 4.1281 0.0644 -5.1592 13 16 3.4867 2.5557 -0.2824 14 8 4.4115 3.1473 -1.1845 15 8 3.7580 2.3738 1.1006 16 6 2.0135 3.5175 -0.3781 17 6 1.1210 3.5247 0.6799 18 9 1.3794 2.7945 1.7868 19 6 -0.0367 4.2804 0.6034 20 6 -0.3010 5.0279 -0.5287 21 6 -1.5616 5.8497 -0.6110 22 6 0.5868 5.0175 -1.5879 23 6 1.7474 4.2660 -1.5116 24 9 2.6178 4.2603 -2.5449 25 1 -1.0502 -0.0001 0.0003 26 1 3.0098 -0.9658 -0.3487 27 1 3.0091 0.1822 1.0116 28 1 1.6136 -1.9272 -2.5470 29 1 -0.7334 4.2858 1.4286 30 1 -1.3708 6.8482 -0.2179 31 1 -2.3458 5.3718 -0.0238 32 1 -1.8801 5.9233 -1.6508 33 1 0.3769 5.5981 -2.4739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491784105.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:36 Heat of formation + Delta-G solvation = -77.496643 kcal Electronic energy + Delta-G solvation = -25214.110204 eV Core-core repulsion = 21197.998608 eV Total energy + Delta-G solvation = -4016.111596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.13957 -50.07549 -39.93770 -38.20191 -37.74038 -36.39307 -33.89917 -33.71025 -32.95864 -31.39367 -28.44743 -28.36698 -25.73104 -24.01816 -23.16868 -20.47736 -19.88133 -19.23974 -18.61254 -18.48086 -18.29559 -17.86912 -17.05879 -16.74909 -16.46111 -16.36408 -16.10441 -15.83686 -15.25068 -15.16081 -14.97692 -14.41315 -14.27968 -14.15417 -13.64130 -13.31660 -13.17479 -13.02242 -12.80895 -12.72403 -12.68237 -12.61411 -12.58942 -12.32056 -12.01350 -11.71472 -11.40986 -11.01206 -10.64751 -10.20983 -10.10324 -9.82754 -8.48016 -5.90073 -0.47161 -0.15319 -0.07716 1.47974 1.54204 1.62849 1.94049 2.18079 2.29780 2.43216 2.70712 2.79927 2.85718 3.16320 3.26033 3.41884 3.66227 3.89861 4.04503 4.11740 4.47191 4.50354 4.51590 4.66593 4.67865 4.82828 4.88340 4.94981 5.15495 5.20070 5.25796 5.33262 5.43455 5.73652 6.25290 6.60842 7.05933 7.18312 8.42499 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.006721 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.691940 B = 4165.175897 C = 4341.730998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.149 4.149 3 C 0.232 3.768 4 N -0.789 5.789 5 C -0.256 4.256 6 H 0.114 0.886 7 C 0.002 3.998 8 N -0.819 5.819 9 Si 0.995 3.005 10 H -0.263 1.263 11 H -0.269 1.269 12 H -0.265 1.265 13 S 2.503 3.497 14 O -1.003 7.003 15 O -1.010 7.010 16 C -0.777 4.777 17 C 0.194 3.806 18 F -0.126 7.126 19 C -0.187 4.187 20 C 0.012 3.988 21 C -0.113 4.113 22 C -0.189 4.189 23 C 0.190 3.810 24 F -0.127 7.127 25 H 0.231 0.769 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.286 0.714 29 H 0.174 0.826 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.783 6.123 0.136 11.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.152 4.152 3 C 0.107 3.893 4 N -0.609 5.609 5 C -0.406 4.406 6 H 0.132 0.868 7 C -0.211 4.211 8 N -0.457 5.457 9 Si 0.816 3.184 10 H -0.188 1.188 11 H -0.194 1.194 12 H -0.189 1.189 13 S 2.603 3.397 14 O -0.993 6.993 15 O -0.999 6.999 16 C -0.856 4.856 17 C 0.173 3.827 18 F -0.104 7.104 19 C -0.206 4.206 20 C 0.012 3.988 21 C -0.168 4.168 22 C -0.208 4.208 23 C 0.169 3.831 24 F -0.105 7.105 25 H 0.248 0.752 26 H 0.132 0.868 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.192 0.808 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.043 6.504 0.721 11.162 hybrid contribution -0.075 -0.408 -0.659 0.779 sum -9.118 6.096 0.062 10.968 Atomic orbital electron populations 1.24984 0.96128 1.01424 1.04118 1.23478 0.94962 0.99529 0.97202 1.18523 0.84894 0.93241 0.92602 1.55743 1.70989 1.18669 1.15519 1.20471 1.31074 1.02724 0.86362 0.86828 1.26446 0.95107 0.97259 1.02287 1.70302 1.20817 1.14963 1.39581 0.84889 0.78401 0.78676 0.76385 1.18789 1.19417 1.18885 1.13263 0.79181 0.73875 0.73347 1.93314 1.63527 1.77858 1.64579 1.93314 1.86284 1.85736 1.34597 1.32027 1.30487 1.21768 1.01344 1.17097 0.93871 0.90509 0.81210 1.91577 1.94003 1.74804 1.50023 1.21487 0.96819 1.00243 1.02096 1.20223 0.96155 0.92512 0.89949 1.21031 0.91249 0.99323 1.05243 1.21504 0.93232 1.03127 1.02946 1.17171 0.88449 0.94759 0.82712 1.91583 1.68494 1.94591 1.55854 0.75226 0.86784 0.89955 0.90322 0.80840 0.88041 0.88857 0.89004 0.80951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.04 19.25 74.32 1.43 -8.61 16 2 C -0.15 -6.80 11.25 31.13 0.35 -6.45 16 3 C 0.23 10.98 5.45 84.57 0.46 11.44 16 4 N -0.79 -40.03 2.88 -352.50 -1.02 -41.04 16 5 C -0.26 -12.97 9.48 84.03 0.80 -12.18 16 6 H 0.11 5.94 7.22 -2.91 -0.02 5.92 16 7 C 0.00 0.08 4.92 84.86 0.42 0.50 16 8 N -0.82 -37.96 8.96 21.65 0.19 -37.76 16 9 Si 1.00 36.87 29.62 68.60 2.03 38.90 16 10 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 11 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 12 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 13 S 2.50 130.27 5.54 -56.49 -0.31 129.95 16 14 O -1.00 -56.46 14.98 -128.00 -1.92 -58.37 16 15 O -1.01 -54.86 14.77 -128.00 -1.89 -56.75 16 16 C -0.78 -35.59 5.98 22.36 0.13 -35.46 16 17 C 0.19 7.89 7.21 22.37 0.16 8.05 16 18 F -0.13 -5.51 15.34 44.97 0.69 -4.82 16 19 C -0.19 -5.58 9.68 22.32 0.22 -5.37 16 20 C 0.01 0.31 5.88 -19.88 -0.12 0.19 16 21 C -0.11 -1.52 10.01 71.24 0.71 -0.81 16 22 C -0.19 -5.75 9.68 22.32 0.22 -5.53 16 23 C 0.19 7.92 7.21 22.37 0.16 8.08 16 24 F -0.13 -5.79 15.34 44.97 0.69 -5.10 16 25 H 0.23 7.23 7.80 -4.41 -0.03 7.20 16 26 H 0.11 5.32 6.41 -2.39 -0.02 5.31 16 27 H 0.08 3.80 6.95 -2.38 -0.02 3.79 16 28 H 0.29 12.23 8.31 -92.71 -0.77 11.46 16 29 H 0.17 3.82 8.06 -2.91 -0.02 3.79 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 0.98 8.08 -2.39 -0.02 0.97 16 32 H 0.09 1.00 8.08 -2.39 -0.02 0.98 16 33 H 0.17 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -68.08 311.88 4.57 -63.51 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 1.16 Total: 17.61 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 4.94 Total: -46.13 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -0.82 Total: -78.80 kcal Atomic # 8 Polarization: -111.32 SS G_CDS: -3.81 Total: -115.13 kcal Atomic # 9 Polarization: -11.30 SS G_CDS: 1.38 Total: -9.92 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Atomic # 16 Polarization: 130.27 SS G_CDS: -0.31 Total: 129.95 kcal Total: -68.08 4.57 -63.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491784105.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.987 kcal (2) G-P(sol) polarization free energy of solvation -68.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds