Wall clock time and date at job start Tue Mar 31 2020 11:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99974 * 2 1 4 4 C 1.53000 * 109.47247 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47041 * 65.56530 * 4 3 2 6 6 C 1.36786 * 119.99857 * 264.15676 * 5 4 3 7 7 H 1.07994 * 119.99669 * 137.10309 * 6 5 4 8 8 C 1.39043 * 119.99913 * 317.11049 * 6 5 4 9 9 N 1.31374 * 119.99894 * 171.92796 * 8 6 5 10 10 Si 1.86801 * 119.99943 * 351.92520 * 8 6 5 11 11 H 1.48497 * 109.47259 * 92.30458 * 10 8 6 12 12 H 1.48505 * 109.46896 * 212.30615 * 10 8 6 13 13 H 1.48497 * 109.47318 * 332.30321 * 10 8 6 14 14 C 1.34768 * 120.00143 * 84.15562 * 5 4 3 15 15 O 1.21861 * 120.00223 * 4.35886 * 14 5 4 16 16 C 1.41190 * 120.00179 * 184.35549 * 14 5 4 17 17 C 1.35890 * 120.00077 * 186.30982 * 16 14 5 18 18 C 1.41368 * 120.00363 * 8.88176 * 17 16 14 19 19 C 1.37175 * 125.47169 * 225.73733 * 18 17 16 20 20 C 1.37336 * 113.23099 * 179.79761 * 19 18 17 21 21 C 1.34092 * 115.10305 * 0.49508 * 20 19 18 22 22 Cl 1.73600 * 124.49796 * 179.72488 * 21 20 19 23 23 S 1.70611 * 111.00827 * 359.72364 * 21 20 19 24 24 H 1.08997 * 109.47285 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47294 * 300.00323 * 1 2 3 26 26 H 1.09001 * 109.47088 * 60.00276 * 1 2 3 27 27 H 1.08999 * 109.47471 * 59.99412 * 3 2 1 28 28 H 1.09007 * 109.46971 * 299.99805 * 3 2 1 29 29 H 1.09001 * 109.47024 * 305.56602 * 4 3 2 30 30 H 1.09006 * 109.47359 * 185.56121 * 4 3 2 31 31 H 0.97004 * 120.00347 * 180.02562 * 9 8 6 32 32 H 1.08003 * 119.99657 * 6.03576 * 16 14 5 33 33 H 1.08002 * 120.00108 * 188.88186 * 17 16 14 34 34 H 1.07998 * 123.37894 * 359.96259 * 19 18 17 35 35 H 1.07995 * 122.45191 * 180.19519 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9777 0.5763 -1.2566 6 6 4.2139 -0.7695 -1.3193 7 1 3.8709 -1.3389 -2.1704 8 6 4.8954 -1.4045 -0.2870 9 7 4.9846 -2.7151 -0.2673 10 14 5.6843 -0.3941 1.0718 11 1 4.7262 -0.2431 2.1962 12 1 6.9085 -1.0828 1.5536 13 1 6.0453 0.9468 0.5456 14 6 4.1517 1.3426 -2.3515 15 8 4.0186 2.5516 -2.2765 16 6 4.4884 0.7448 -3.5854 17 6 4.7895 1.5232 -4.6579 18 6 4.9499 2.9184 -4.4959 19 6 4.4084 3.8816 -5.3088 20 6 4.7217 5.1600 -4.9169 21 6 5.5006 5.2466 -3.8288 22 17 6.0484 6.7374 -3.1279 23 16 5.8818 3.6973 -3.2245 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8464 -0.8901 29 1 3.8501 0.5603 0.8368 30 1 3.9784 2.1757 0.1002 31 1 5.4597 -3.1582 0.4531 32 1 4.5111 -0.3312 -3.6758 33 1 4.9062 1.0760 -5.6340 34 1 3.7950 3.6571 -6.1689 35 1 4.3707 6.0317 -5.4490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493739931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:35 Heat of formation + Delta-G solvation = -0.686327 kcal Electronic energy + Delta-G solvation = -22025.417128 eV Core-core repulsion = 18564.432957 eV Total energy + Delta-G solvation = -3460.984171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.43102 -37.68248 -37.16753 -36.27732 -35.08128 -33.06330 -32.05764 -29.87305 -27.92000 -25.96573 -25.13833 -24.13051 -22.93089 -21.20230 -19.41115 -18.96132 -17.54611 -16.77470 -15.96594 -15.89267 -15.75093 -15.24897 -14.83441 -14.61944 -14.05813 -13.86787 -13.39622 -13.04851 -12.97442 -12.76583 -12.57799 -12.33608 -12.01035 -11.86474 -11.70520 -11.56528 -11.11960 -10.95799 -10.87758 -10.81840 -10.31003 -10.13243 -9.90230 -9.41133 -9.22242 -9.09442 -8.71030 -8.17724 -7.57836 -7.15337 -6.49169 -4.13947 0.75460 1.67851 2.17765 2.45698 2.73171 3.02268 3.11120 3.18534 3.19535 4.05009 4.21582 4.28192 4.42249 4.98699 5.41963 5.52307 5.57777 5.67358 5.70159 5.75273 5.78232 5.83490 5.89006 5.96869 6.13106 6.22005 6.30541 6.36404 6.49188 6.64044 6.87464 6.98548 7.29915 7.69319 8.01460 8.15793 8.87482 9.23333 9.56525 10.60121 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.004710 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.805999 B = 5943.940624 C = 6180.710194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.055 3.945 4 C 0.096 3.904 5 N -0.434 5.434 6 C -0.326 4.326 7 H 0.107 0.893 8 C 0.069 3.931 9 N -0.861 5.861 10 Si 0.884 3.116 11 H -0.273 1.273 12 H -0.288 1.288 13 H -0.261 1.261 14 C 0.482 3.518 15 O -0.589 6.589 16 C -0.142 4.142 17 C -0.063 4.063 18 C -0.147 4.147 19 C -0.136 4.136 20 C -0.135 4.135 21 C -0.221 4.221 22 Cl -0.044 7.044 23 S 0.334 5.666 24 H 0.081 0.919 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.276 0.724 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.193 9.517 -4.668 10.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C -0.022 4.022 4 C -0.027 4.027 5 N -0.151 5.151 6 C -0.454 4.454 7 H 0.125 0.875 8 C -0.139 4.139 9 N -0.496 5.496 10 Si 0.712 3.288 11 H -0.200 1.200 12 H -0.216 1.216 13 H -0.185 1.185 14 C 0.276 3.724 15 O -0.479 6.479 16 C -0.166 4.166 17 C -0.086 4.086 18 C -0.267 4.267 19 C -0.166 4.166 20 C -0.170 4.170 21 C -0.367 4.367 22 Cl -0.015 7.015 23 S 0.606 5.394 24 H 0.100 0.900 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.137 9.385 -3.149 9.900 hybrid contribution -0.995 1.112 -0.239 1.511 sum -1.132 10.496 -3.389 11.088 Atomic orbital electron populations 1.22665 0.82758 1.02147 0.98923 1.88159 1.17962 1.26939 1.95088 1.22860 0.94686 0.85070 0.99612 1.21828 0.92326 0.99266 0.89293 1.43740 1.55279 1.08221 1.07888 1.19056 1.35558 0.81052 1.09692 0.87547 1.25377 0.95314 0.95366 0.97854 1.69622 1.39457 1.07709 1.32819 0.86847 0.78794 0.81054 0.82077 1.19978 1.21558 1.18491 1.17191 0.83049 0.86333 0.85849 1.90832 1.56788 1.13531 1.86766 1.22519 0.99430 1.01687 0.92937 1.20461 0.99593 0.90003 0.98502 1.22495 1.06015 0.97737 1.00454 1.20334 1.03854 0.90613 1.01838 1.19635 1.01758 0.98421 0.97174 1.25059 1.13167 0.94567 1.03897 1.98305 1.88717 1.31113 1.83410 1.83107 1.40985 0.89735 1.25562 0.90033 0.95053 0.94777 0.93767 0.92972 0.90827 0.89490 0.91349 0.84064 0.84829 0.84383 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.49 10.48 -35.23 -0.37 -7.85 16 3 C 0.06 1.07 6.24 37.16 0.23 1.30 16 4 C 0.10 2.06 4.05 -4.04 -0.02 2.04 16 5 N -0.43 -10.01 2.14 -118.18 -0.25 -10.27 16 6 C -0.33 -8.17 8.73 -15.04 -0.13 -8.30 16 7 H 0.11 2.80 6.93 -52.49 -0.36 2.44 16 8 C 0.07 1.77 5.45 -17.45 -0.10 1.67 16 9 N -0.86 -23.28 13.95 55.50 0.77 -22.51 16 10 Si 0.88 20.17 24.60 -169.99 -4.18 15.99 16 11 H -0.27 -6.06 6.78 56.52 0.38 -5.68 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.26 -5.88 6.84 56.52 0.39 -5.50 16 14 C 0.48 10.52 6.93 -15.14 -0.10 10.42 16 15 O -0.59 -13.12 11.13 5.04 0.06 -13.06 16 16 C -0.14 -2.71 9.17 -39.30 -0.36 -3.07 16 17 C -0.06 -1.03 9.89 -39.23 -0.39 -1.41 16 18 C -0.15 -2.52 4.60 -38.78 -0.18 -2.70 16 19 C -0.14 -2.10 10.25 -40.30 -0.41 -2.51 16 20 C -0.14 -2.07 10.08 -41.37 -0.42 -2.49 16 21 C -0.22 -3.61 6.82 29.27 0.20 -3.41 16 22 Cl -0.04 -0.64 29.27 -51.86 -1.52 -2.15 16 23 S 0.33 5.90 19.33 -107.50 -2.08 3.82 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.65 3.19 -51.93 -0.17 1.48 16 30 H 0.09 1.79 7.54 -51.93 -0.39 1.39 16 31 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.14 2.66 6.40 -52.48 -0.34 2.33 16 33 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 322.10 15.07 4.85 4.85 Total: -1.00 -28.34 322.10 -7.08 -35.42 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -3.81 Total: 2.61 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.56 Total: -6.85 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.52 Total: -32.77 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.31 Total: -20.91 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.18 Total: 15.99 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -2.08 Total: 3.82 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.52 Total: -2.15 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.34 -7.08 -35.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493739931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.735 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds