Wall clock time and date at job start Tue Mar 31 2020 11:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99974 * 2 1 4 4 C 1.53000 * 109.47247 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47041 * 65.56530 * 4 3 2 6 6 C 1.36786 * 119.99857 * 264.15676 * 5 4 3 7 7 H 1.07994 * 119.99669 * 137.10309 * 6 5 4 8 8 C 1.39043 * 119.99913 * 317.11049 * 6 5 4 9 9 N 1.31374 * 119.99894 * 171.92796 * 8 6 5 10 10 Si 1.86801 * 119.99943 * 351.92520 * 8 6 5 11 11 H 1.48497 * 109.47259 * 92.30458 * 10 8 6 12 12 H 1.48505 * 109.46896 * 212.30615 * 10 8 6 13 13 H 1.48497 * 109.47318 * 332.30321 * 10 8 6 14 14 C 1.34768 * 120.00143 * 84.15562 * 5 4 3 15 15 O 1.21861 * 120.00223 * 4.35886 * 14 5 4 16 16 C 1.41190 * 120.00179 * 184.35549 * 14 5 4 17 17 C 1.35890 * 120.00077 * 186.30982 * 16 14 5 18 18 C 1.41368 * 120.00363 * 8.88176 * 17 16 14 19 19 C 1.37175 * 125.47169 * 225.73733 * 18 17 16 20 20 C 1.37336 * 113.23099 * 179.79761 * 19 18 17 21 21 C 1.34092 * 115.10305 * 0.49508 * 20 19 18 22 22 Cl 1.73600 * 124.49796 * 179.72488 * 21 20 19 23 23 S 1.70611 * 111.00827 * 359.72364 * 21 20 19 24 24 H 1.08997 * 109.47285 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47294 * 300.00323 * 1 2 3 26 26 H 1.09001 * 109.47088 * 60.00276 * 1 2 3 27 27 H 1.08999 * 109.47471 * 59.99412 * 3 2 1 28 28 H 1.09007 * 109.46971 * 299.99805 * 3 2 1 29 29 H 1.09001 * 109.47024 * 305.56602 * 4 3 2 30 30 H 1.09006 * 109.47359 * 185.56121 * 4 3 2 31 31 H 0.97004 * 120.00347 * 180.02562 * 9 8 6 32 32 H 1.08003 * 119.99657 * 6.03576 * 16 14 5 33 33 H 1.08002 * 120.00108 * 188.88186 * 17 16 14 34 34 H 1.07998 * 123.37894 * 359.96259 * 19 18 17 35 35 H 1.07995 * 122.45191 * 180.19519 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9777 0.5763 -1.2566 6 6 4.2139 -0.7695 -1.3193 7 1 3.8709 -1.3389 -2.1704 8 6 4.8954 -1.4045 -0.2870 9 7 4.9846 -2.7151 -0.2673 10 14 5.6843 -0.3941 1.0718 11 1 4.7262 -0.2431 2.1962 12 1 6.9085 -1.0828 1.5536 13 1 6.0453 0.9468 0.5456 14 6 4.1517 1.3426 -2.3515 15 8 4.0186 2.5516 -2.2765 16 6 4.4884 0.7448 -3.5854 17 6 4.7895 1.5232 -4.6579 18 6 4.9499 2.9184 -4.4959 19 6 4.4084 3.8816 -5.3088 20 6 4.7217 5.1600 -4.9169 21 6 5.5006 5.2466 -3.8288 22 17 6.0484 6.7374 -3.1279 23 16 5.8818 3.6973 -3.2245 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8464 -0.8901 29 1 3.8501 0.5603 0.8368 30 1 3.9784 2.1757 0.1002 31 1 5.4597 -3.1582 0.4531 32 1 4.5111 -0.3312 -3.6758 33 1 4.9062 1.0760 -5.6340 34 1 3.7950 3.6571 -6.1689 35 1 4.3707 6.0317 -5.4490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493739931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:34 Heat of formation + Delta-G solvation = -17.160717 kcal Electronic energy + Delta-G solvation = -22026.131511 eV Core-core repulsion = 18564.432957 eV Total energy + Delta-G solvation = -3461.698554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07432 -39.02997 -38.57911 -37.54493 -36.74019 -34.53916 -33.90319 -31.40593 -29.29536 -27.29103 -26.87398 -25.57361 -24.38342 -22.69119 -20.83674 -20.51687 -19.08043 -18.42540 -17.61240 -17.36188 -17.18346 -16.65871 -16.35018 -16.17953 -15.53806 -15.40927 -14.93612 -14.50730 -14.35171 -14.28453 -14.00818 -13.75419 -13.52113 -13.40710 -13.13011 -13.08932 -12.62368 -12.47691 -12.28513 -12.13318 -11.89881 -11.66250 -11.53176 -11.10898 -10.72290 -10.53775 -10.32577 -9.80287 -9.01814 -8.60085 -8.41029 -6.08956 -0.60292 0.38559 0.83518 1.15554 1.21850 1.32433 1.39274 1.44756 1.84009 2.19868 2.59416 2.71240 2.90965 3.18524 4.01514 4.11579 4.14191 4.33845 4.36917 4.46277 4.50597 4.52902 4.57389 4.61360 4.73410 4.81900 4.87899 5.00736 5.15807 5.34134 5.46750 5.54655 5.66216 6.12270 6.26088 6.35599 7.01223 7.44962 7.80929 8.71697 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.004710 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.805999 B = 5943.940624 C = 6180.710194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.062 3.938 4 C 0.090 3.910 5 N -0.457 5.457 6 C -0.313 4.313 7 H 0.081 0.919 8 C 0.026 3.974 9 N -0.907 5.907 10 Si 0.931 3.069 11 H -0.264 1.264 12 H -0.290 1.290 13 H -0.260 1.260 14 C 0.491 3.509 15 O -0.592 6.592 16 C -0.191 4.191 17 C -0.014 4.014 18 C -0.177 4.177 19 C -0.115 4.115 20 C -0.136 4.136 21 C -0.218 4.218 22 Cl -0.029 7.029 23 S 0.281 5.719 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.276 0.724 32 H 0.135 0.865 33 H 0.176 0.824 34 H 0.171 0.829 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 11.983 -6.060 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.016 4.016 4 C -0.032 4.032 5 N -0.176 5.176 6 C -0.442 4.442 7 H 0.099 0.901 8 C -0.177 4.177 9 N -0.545 5.545 10 Si 0.758 3.242 11 H -0.191 1.191 12 H -0.217 1.217 13 H -0.185 1.185 14 C 0.285 3.715 15 O -0.482 6.482 16 C -0.214 4.214 17 C -0.036 4.036 18 C -0.296 4.296 19 C -0.145 4.145 20 C -0.171 4.171 21 C -0.364 4.364 22 Cl -0.001 7.001 23 S 0.553 5.447 24 H 0.108 0.892 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.153 0.847 33 H 0.193 0.807 34 H 0.189 0.811 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.845 11.879 -4.553 12.750 hybrid contribution -0.817 0.673 -0.079 1.062 sum -1.663 12.552 -4.632 13.482 Atomic orbital electron populations 1.22873 0.80298 1.03285 1.00459 1.88100 1.20810 1.27797 1.95384 1.22793 0.93228 0.84925 1.00629 1.21892 0.94113 0.98888 0.88350 1.43730 1.57533 1.07473 1.08823 1.18788 1.34750 0.81937 1.08716 0.90123 1.25892 0.95977 0.95960 0.99821 1.69708 1.41764 1.08945 1.34100 0.86095 0.78063 0.79716 0.80334 1.19062 1.21694 1.18469 1.17603 0.81445 0.86263 0.86146 1.90832 1.56609 1.13699 1.87037 1.22392 1.04159 1.01758 0.93138 1.20931 0.93897 0.89542 0.99205 1.22689 1.07863 0.98323 1.00747 1.20766 1.02236 0.90027 1.01517 1.20022 1.00840 0.99482 0.96711 1.25181 1.12752 0.94450 1.04049 1.98314 1.88594 1.29888 1.83277 1.83329 1.42679 0.91607 1.27105 0.89229 0.92623 0.93987 0.90727 0.93691 0.91983 0.89060 0.91393 0.84683 0.80701 0.81124 0.82398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -16.47 10.48 -148.98 -1.56 -18.03 16 3 C 0.06 2.33 6.24 71.98 0.45 2.78 16 4 C 0.09 3.87 4.05 86.38 0.35 4.23 16 5 N -0.46 -21.37 2.14 -645.98 -1.38 -22.75 16 6 C -0.31 -16.30 8.73 84.11 0.73 -15.56 16 7 H 0.08 4.49 6.93 -2.91 -0.02 4.47 16 8 C 0.03 1.40 5.45 84.95 0.46 1.87 16 9 N -0.91 -51.07 13.95 21.68 0.30 -50.77 16 10 Si 0.93 42.50 24.60 68.60 1.69 44.19 16 11 H -0.26 -11.54 6.78 99.48 0.67 -10.86 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.26 -11.68 6.84 99.48 0.68 -11.00 16 14 C 0.49 21.44 6.93 84.97 0.59 22.03 16 15 O -0.59 -25.91 11.13 -4.86 -0.05 -25.96 16 16 C -0.19 -7.23 9.17 22.45 0.21 -7.03 16 17 C -0.01 -0.41 9.89 22.49 0.22 -0.19 16 18 C -0.18 -5.56 4.60 22.79 0.10 -5.45 16 19 C -0.12 -3.05 10.25 21.81 0.22 -2.83 16 20 C -0.14 -3.63 10.08 21.11 0.21 -3.42 16 21 C -0.22 -6.56 6.82 66.87 0.46 -6.10 16 22 Cl -0.03 -0.78 29.27 -2.72 -0.08 -0.86 16 23 S 0.28 9.54 19.33 -56.49 -1.09 8.45 16 24 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.06 2.78 3.19 -2.39 -0.01 2.77 16 30 H 0.09 3.72 7.54 -2.38 -0.02 3.71 16 31 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.14 5.25 6.40 -2.91 -0.02 5.23 16 33 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 35 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -62.34 322.10 4.14 -58.20 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.06 Total: 15.17 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 5.26 Total: -7.64 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -1.08 Total: -73.52 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.62 Total: -43.99 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.69 Total: 44.19 kcal Atomic # 16 Polarization: 9.54 SS G_CDS: -1.09 Total: 8.45 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -62.34 4.14 -58.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493739931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.037 kcal (2) G-P(sol) polarization free energy of solvation -62.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds