Wall clock time and date at job start Tue Mar 31 2020 10:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86804 * 119.99847 * 2 1 4 4 H 1.48506 * 109.46699 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46999 * 299.99918 * 3 2 1 6 6 H 1.48492 * 109.47129 * 60.00073 * 3 2 1 7 7 C 1.39977 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99776 * 165.00342 * 7 2 1 9 9 C 1.41026 * 120.00398 * 345.00810 * 7 2 1 10 10 C 1.41344 * 120.53962 * 330.38172 * 9 7 2 11 11 C 1.36537 * 118.42159 * 179.76671 * 10 9 7 12 12 C 1.40010 * 119.46096 * 0.49342 * 11 10 9 13 13 C 1.47765 * 119.45474 * 179.76642 * 12 11 10 14 14 C 1.39899 * 120.13504 * 312.34507 * 13 12 11 15 15 F 1.35100 * 120.06944 * 0.02562 * 14 13 12 16 16 C 1.38258 * 119.86144 * 179.97438 * 14 13 12 17 17 F 1.35099 * 119.93208 * 180.02562 * 16 14 13 18 18 C 1.38758 * 120.13834 * 359.97438 * 16 14 13 19 19 F 1.35099 * 119.86695 * 180.02562 * 18 16 14 20 20 C 1.38760 * 120.27079 * 0.30208 * 18 16 14 21 21 F 1.35096 * 119.92948 * 179.71945 * 20 18 16 22 22 C 1.38262 * 120.13246 * 359.44649 * 20 18 16 23 23 F 1.35103 * 120.06916 * 180.29631 * 22 20 18 24 24 N 1.33082 * 121.08358 * 359.48873 * 12 11 10 25 25 C 1.31269 * 121.71317 * 0.25633 * 24 12 11 26 26 H 0.96999 * 119.99982 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.79019 * 359.97438 * 10 9 7 28 28 H 1.08001 * 120.26515 * 180.25993 * 11 10 9 29 29 H 1.07996 * 119.79602 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0081 -1.2122 0.0005 8 1 3.0606 -1.2282 -0.2415 9 6 1.3391 -2.4127 0.3170 10 6 0.2322 -2.4078 1.1960 11 6 -0.3864 -3.5941 1.4686 12 6 0.0947 -4.7719 0.8840 13 6 -0.5716 -6.0564 1.1833 14 6 -0.8698 -6.4016 2.5058 15 9 -0.5496 -5.5606 3.5135 16 6 -1.4938 -7.6046 2.7793 17 9 -1.7829 -7.9391 4.0559 18 6 -1.8247 -8.4687 1.7452 19 9 -2.4349 -9.6426 2.0187 20 6 -1.5265 -8.1345 0.4319 21 9 -1.8467 -8.9835 -0.5690 22 6 -0.9073 -6.9320 0.1452 23 9 -0.6228 -6.6053 -1.1345 24 7 1.1388 -4.7527 0.0591 25 6 1.7634 -3.6369 -0.2377 26 1 -0.4850 0.8400 0.0004 27 1 -0.1181 -1.4872 1.6387 28 1 -1.2375 -3.6242 2.1328 29 1 2.6072 -3.6571 -0.9114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514263560.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:10 Heat of formation + Delta-G solvation = -170.718585 kcal Electronic energy + Delta-G solvation = -25179.138287 eV Core-core repulsion = 20481.683592 eV Total energy + Delta-G solvation = -4697.454694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.038 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.93849 -49.59247 -49.07486 -48.56257 -48.26610 -39.00762 -37.86698 -34.48439 -31.79004 -30.97058 -29.96381 -29.27427 -25.97462 -23.62239 -23.34214 -21.85559 -21.25237 -18.78585 -18.68875 -18.19698 -17.68451 -17.20156 -16.61624 -16.43392 -15.93015 -15.87390 -15.73899 -15.55478 -15.33609 -14.88867 -14.83409 -14.62771 -14.44652 -14.27913 -14.01718 -13.07800 -12.97888 -12.67779 -12.53722 -11.92314 -11.81760 -11.78436 -11.65928 -11.32887 -11.18472 -10.82941 -10.14764 -9.70226 -9.07576 -8.76271 -8.59438 -8.38319 -7.73065 -7.20825 -4.81851 0.34014 0.44060 2.16806 2.74271 2.76056 2.85516 2.90918 2.93881 3.02002 3.60521 3.62953 3.78653 3.99061 4.17363 4.32311 4.35985 4.88188 5.19339 5.24351 5.49996 5.62014 5.79409 5.88319 6.33551 6.45254 6.48061 6.55989 6.71243 6.96280 7.33176 7.53179 7.59256 8.08494 8.28231 8.35093 9.23566 9.69348 Molecular weight = 315.04amu Principal moments of inertia in cm(-1) A = 0.025462 B = 0.003666 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.392565 B = 7635.308966 C = 8367.692431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.424 4.424 8 H 0.092 0.908 9 C 0.078 3.922 10 C -0.139 4.139 11 C -0.100 4.100 12 C -0.035 4.035 13 C 0.007 3.993 14 C 0.108 3.892 15 F -0.101 7.101 16 C 0.057 3.943 17 F -0.110 7.110 18 C 0.061 3.939 19 F -0.109 7.109 20 C 0.055 3.945 21 F -0.110 7.110 22 C 0.123 3.877 23 F -0.094 7.094 24 N -0.432 5.432 25 C -0.006 4.006 26 H 0.290 0.710 27 H 0.125 0.875 28 H 0.103 0.897 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.840 -6.970 3.006 8.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.152 4.152 3 Si 0.742 3.258 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.452 4.452 8 H 0.110 0.890 9 C 0.073 3.927 10 C -0.164 4.164 11 C -0.121 4.121 12 C -0.167 4.167 13 C 0.004 3.996 14 C 0.086 3.914 15 F -0.079 7.079 16 C 0.035 3.965 17 F -0.089 7.089 18 C 0.039 3.961 19 F -0.087 7.087 20 C 0.033 3.967 21 F -0.088 7.088 22 C 0.102 3.898 23 F -0.072 7.072 24 N -0.139 5.139 25 C -0.174 4.174 26 H 0.101 0.899 27 H 0.143 0.857 28 H 0.121 0.879 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.836 -7.641 2.663 8.574 hybrid contribution -0.241 1.317 0.389 1.394 sum -3.077 -6.324 3.051 7.666 Atomic orbital electron populations 1.69775 1.07928 1.30529 1.31005 1.26142 0.94956 1.02189 0.91916 0.86057 0.80989 0.79695 0.79041 1.17871 1.19472 1.19268 1.19800 0.97680 0.90553 1.37173 0.88976 1.18682 0.91526 0.93816 0.88702 1.21203 0.98986 0.96605 0.99580 1.21164 0.98971 0.92995 0.98961 1.17948 1.01042 0.88839 1.08885 1.18431 0.97309 0.95169 0.88686 1.16933 1.01684 0.87790 0.85024 1.91593 1.90164 1.68883 1.57308 1.16916 1.05592 0.94401 0.79563 1.91568 1.91444 1.92158 1.33690 1.16637 1.03835 0.85105 0.90489 1.91564 1.80228 1.42915 1.94034 1.17031 1.05614 0.90030 0.84008 1.91568 1.90717 1.68573 1.57986 1.17006 0.99871 0.92050 0.80907 1.91623 1.90680 1.92005 1.32870 1.66961 1.05410 1.31449 1.10092 1.22536 1.03146 0.87757 1.03929 0.89875 0.85679 0.87931 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.47 11.17 55.55 0.62 -16.85 15 2 C 0.07 1.52 5.18 -17.33 -0.09 1.43 15 3 Si 0.92 16.18 29.59 -169.99 -5.03 11.15 15 4 H -0.26 -4.45 7.11 56.52 0.40 -4.04 15 5 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 6 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15 7 C -0.42 -9.72 9.05 -37.87 -0.34 -10.07 15 8 H 0.09 1.98 7.89 -52.48 -0.41 1.57 15 9 C 0.08 1.86 5.53 -106.64 -0.59 1.27 15 10 C -0.14 -3.25 8.70 -39.02 -0.34 -3.59 15 11 C -0.10 -2.18 8.77 -39.53 -0.35 -2.52 15 12 C -0.03 -0.75 6.00 -82.77 -0.50 -1.25 15 13 C 0.01 0.13 5.62 -104.76 -0.59 -0.46 15 14 C 0.11 1.76 7.13 -38.95 -0.28 1.48 15 15 F -0.10 -1.73 15.57 2.25 0.04 -1.70 15 16 C 0.06 0.83 7.30 -39.38 -0.29 0.54 15 17 F -0.11 -1.59 17.08 2.25 0.04 -1.55 15 18 C 0.06 0.87 7.31 -39.20 -0.29 0.58 15 19 F -0.11 -1.51 17.08 2.25 0.04 -1.47 15 20 C 0.05 0.83 7.30 -39.38 -0.29 0.54 15 21 F -0.11 -1.64 17.08 2.25 0.04 -1.61 15 22 C 0.12 2.12 7.24 -38.95 -0.28 1.84 15 23 F -0.09 -1.78 16.27 2.25 0.04 -1.74 15 24 N -0.43 -9.91 9.65 -9.12 -0.09 -10.00 15 25 C -0.01 -0.15 10.97 -16.77 -0.18 -0.33 15 26 H 0.29 5.90 8.30 -40.82 -0.34 5.57 15 27 H 0.13 2.94 6.54 -52.49 -0.34 2.60 15 28 H 0.10 1.99 7.56 -52.49 -0.40 1.59 15 29 H 0.14 2.83 8.06 -52.49 -0.42 2.40 15 LS Contribution 289.23 15.07 4.36 4.36 Total: -1.00 -23.80 289.23 -5.06 -28.86 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -0.71 Total: 1.09 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -4.40 Total: -10.53 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.53 Total: -26.86 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 0.19 Total: -8.07 kcal Atomic # 14 Polarization: 16.18 SS G_CDS: -5.03 Total: 11.15 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -23.80 -5.06 -28.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514263560.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.862 kcal (2) G-P(sol) polarization free energy of solvation -23.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds