Wall clock time and date at job start Tue Mar 31 2020 11:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00280 * 2 1 4 4 H 1.48503 * 109.47189 * 239.99813 * 3 2 1 5 5 H 1.48499 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47617 * 119.99762 * 3 2 1 7 7 C 1.37883 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99898 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00014 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47220 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.46949 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47223 * 179.97438 * 12 11 10 14 14 O 1.21290 * 120.00018 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00322 * 179.97438 * 13 12 11 16 16 C 1.39971 * 120.00369 * 185.27448 * 15 13 12 17 17 C 1.38884 * 120.05521 * 213.28221 * 16 15 13 18 18 C 1.38101 * 119.96747 * 180.02562 * 17 16 15 19 19 C 1.38374 * 120.07320 * 359.97438 * 18 17 16 20 20 Cl 1.73597 * 119.95311 * 180.27561 * 19 18 17 21 21 C 1.38479 * 120.09944 * 359.97438 * 19 18 17 22 22 Cl 1.73608 * 119.98293 * 180.02562 * 21 19 18 23 23 C 1.38237 * 120.03547 * 359.97438 * 21 19 18 24 24 H 0.97007 * 119.99870 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47150 * 59.99461 * 9 7 2 26 26 H 1.09007 * 109.46774 * 299.99536 * 9 7 2 27 27 H 1.08997 * 109.47027 * 59.99360 * 10 9 7 28 28 H 1.09007 * 109.46412 * 299.99840 * 10 9 7 29 29 H 1.08996 * 109.47118 * 59.99517 * 11 10 9 30 30 H 1.08999 * 109.46983 * 299.99846 * 11 10 9 31 31 H 1.08996 * 109.47314 * 59.99994 * 12 11 10 32 32 H 1.08999 * 109.47444 * 299.99921 * 12 11 10 33 33 H 0.97004 * 119.99964 * 5.27774 * 15 13 12 34 34 H 1.08004 * 120.01416 * 0.03946 * 17 16 15 35 35 H 1.08001 * 119.96175 * 180.02562 * 18 17 16 36 36 H 1.08010 * 120.03607 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 2.4743 -6.1500 0.0031 13 6 1.7208 -7.4551 0.0044 14 8 0.5079 -7.4551 0.0043 15 7 2.3946 -8.6223 0.0046 16 6 1.6992 -9.8320 -0.1056 17 6 2.1700 -10.9666 0.5424 18 6 1.4826 -12.1593 0.4319 19 6 0.3250 -12.2252 -0.3233 20 17 -0.5404 -13.7243 -0.4541 21 6 -0.1476 -11.0954 -0.9698 22 17 -1.6006 -11.1813 -1.9159 23 6 0.5364 -9.8991 -0.8613 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6240 -2.5566 0.8904 27 1 2.8712 -3.6040 0.8922 28 1 2.8725 -3.6047 -0.8878 29 1 0.8538 -5.0455 -0.8877 30 1 0.8531 -5.0442 0.8922 31 1 3.1009 -6.0918 0.8930 32 1 3.1010 -6.0928 -0.8868 33 1 3.3616 -8.6241 0.0812 34 1 3.0731 -10.9161 1.1326 35 1 1.8486 -13.0415 0.9363 36 1 0.1680 -9.0180 -1.3659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588147754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:18 Heat of formation + Delta-G solvation = -48.784915 kcal Electronic energy + Delta-G solvation = -20072.421305 eV Core-core repulsion = 16607.307717 eV Total energy + Delta-G solvation = -3465.113588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.92161 -39.08729 -36.94655 -36.81601 -35.12131 -34.80669 -32.70319 -31.35516 -30.50612 -29.17843 -25.82601 -23.82798 -23.23090 -22.03699 -20.50115 -20.06687 -18.41413 -17.23403 -17.04997 -16.24114 -16.16910 -15.56767 -15.25921 -14.53686 -14.49254 -14.28383 -14.11918 -13.86705 -13.04293 -12.66797 -12.59864 -12.32210 -12.17801 -11.94187 -11.77785 -11.66555 -11.39401 -11.18812 -11.01258 -10.61074 -10.57622 -10.47808 -10.46936 -10.07731 -9.66516 -9.30928 -9.26512 -9.03597 -8.51562 -8.32654 -5.97397 -4.00239 0.49085 0.69897 1.52680 1.85918 2.34256 2.70215 3.11200 3.33624 3.38363 3.40233 4.22375 4.46095 4.52081 4.52622 4.73863 4.78988 5.13116 5.20614 5.22333 5.37167 5.37872 5.59540 5.64821 5.74685 5.81131 6.03723 6.19398 6.33645 6.46181 6.75653 6.92533 7.00855 7.15270 7.70600 7.85959 7.86629 8.03282 8.44742 9.07168 9.63488 11.13823 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.032439 B = 0.002014 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.956803 B =13900.529106 C =14604.356595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.105 4.105 12 C -0.137 4.137 13 C 0.511 3.489 14 O -0.508 6.508 15 N -0.680 5.680 16 C 0.173 3.827 17 C -0.135 4.135 18 C -0.077 4.077 19 C -0.054 4.054 20 Cl -0.053 7.053 21 C -0.008 4.008 22 Cl -0.044 7.044 23 C -0.106 4.106 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.415 0.585 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.816 -28.978 -0.458 29.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.143 4.143 12 C -0.176 4.176 13 C 0.301 3.699 14 O -0.381 6.381 15 N -0.326 5.326 16 C 0.078 3.922 17 C -0.156 4.156 18 C -0.097 4.097 19 C -0.082 4.082 20 Cl -0.024 7.024 21 C -0.037 4.037 22 Cl -0.014 7.014 23 C -0.127 4.127 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.252 0.748 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.577 -28.885 -0.569 29.251 hybrid contribution 0.746 0.786 -0.007 1.083 sum 5.323 -28.099 -0.576 28.605 Atomic orbital electron populations 1.69962 1.06050 1.26671 1.50712 1.25046 0.94854 0.99255 0.95425 0.86665 0.79572 0.83230 0.78544 1.20282 1.21312 1.20281 1.21230 0.92929 0.91181 1.50684 0.92800 1.19090 0.94038 0.91243 0.97345 1.21650 0.99112 0.93852 1.00166 1.21492 0.96991 0.92648 1.03187 1.21842 1.00238 0.90999 1.04565 1.21480 0.88692 0.85380 0.74388 1.90756 1.14079 1.87172 1.46048 1.43833 1.11041 1.03987 1.73789 1.17676 0.93411 0.86288 0.94870 1.20964 1.02328 0.91590 1.00735 1.20793 0.92737 0.98653 0.97509 1.20716 0.96606 0.87511 1.03370 1.98384 1.76024 1.30955 1.97082 1.20572 0.91504 0.93514 0.98078 1.98404 1.34326 1.98484 1.70221 1.21068 0.95371 0.97152 0.99147 0.92951 0.96569 0.96584 0.93388 0.93376 0.91615 0.91604 0.88592 0.88458 0.74781 0.84007 0.83632 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 11 C -0.11 -1.73 4.50 -26.73 -0.12 -1.85 16 12 C -0.14 -1.54 5.70 -27.88 -0.16 -1.70 16 13 C 0.51 6.10 7.57 -10.99 -0.08 6.02 16 14 O -0.51 -8.19 13.66 5.55 0.08 -8.12 16 15 N -0.68 -5.71 5.34 -9.86 -0.05 -5.76 16 16 C 0.17 1.63 6.28 -83.68 -0.53 1.11 16 17 C -0.14 -0.94 9.96 -39.39 -0.39 -1.33 16 18 C -0.08 -0.56 9.82 -39.58 -0.39 -0.95 16 19 C -0.05 -0.50 6.32 -39.44 -0.25 -0.75 16 20 Cl -0.05 -0.48 27.95 -51.86 -1.45 -1.93 16 21 C -0.01 -0.09 6.32 -39.49 -0.25 -0.34 16 22 Cl -0.04 -0.48 27.95 -51.86 -1.45 -1.93 16 23 C -0.11 -1.21 8.44 -39.36 -0.33 -1.54 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 30 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.42 1.91 8.82 -40.82 -0.36 1.55 16 34 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 35 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.16 2.04 6.41 -52.48 -0.34 1.71 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -33.24 341.10 -9.67 -42.91 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -4.46 Total: -3.59 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -3.19 Total: -16.86 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.68 Total: -32.28 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.08 Total: -8.12 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -2.90 Total: -3.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.24 -9.67 -42.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.872 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds