Wall clock time and date at job start Tue Mar 31 2020 11:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00280 * 2 1 4 4 H 1.48503 * 109.47189 * 239.99813 * 3 2 1 5 5 H 1.48499 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47617 * 119.99762 * 3 2 1 7 7 C 1.37883 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99898 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00014 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47220 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.46949 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47223 * 179.97438 * 12 11 10 14 14 O 1.21290 * 120.00018 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00322 * 179.97438 * 13 12 11 16 16 C 1.39971 * 120.00369 * 185.27448 * 15 13 12 17 17 C 1.38884 * 120.05521 * 213.28221 * 16 15 13 18 18 C 1.38101 * 119.96747 * 180.02562 * 17 16 15 19 19 C 1.38374 * 120.07320 * 359.97438 * 18 17 16 20 20 Cl 1.73597 * 119.95311 * 180.27561 * 19 18 17 21 21 C 1.38479 * 120.09944 * 359.97438 * 19 18 17 22 22 Cl 1.73608 * 119.98293 * 180.02562 * 21 19 18 23 23 C 1.38237 * 120.03547 * 359.97438 * 21 19 18 24 24 H 0.97007 * 119.99870 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47150 * 59.99461 * 9 7 2 26 26 H 1.09007 * 109.46774 * 299.99536 * 9 7 2 27 27 H 1.08997 * 109.47027 * 59.99360 * 10 9 7 28 28 H 1.09007 * 109.46412 * 299.99840 * 10 9 7 29 29 H 1.08996 * 109.47118 * 59.99517 * 11 10 9 30 30 H 1.08999 * 109.46983 * 299.99846 * 11 10 9 31 31 H 1.08996 * 109.47314 * 59.99994 * 12 11 10 32 32 H 1.08999 * 109.47444 * 299.99921 * 12 11 10 33 33 H 0.97004 * 119.99964 * 5.27774 * 15 13 12 34 34 H 1.08004 * 120.01416 * 0.03946 * 17 16 15 35 35 H 1.08001 * 119.96175 * 180.02562 * 18 17 16 36 36 H 1.08010 * 120.03607 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 2.4743 -6.1500 0.0031 13 6 1.7208 -7.4551 0.0044 14 8 0.5079 -7.4551 0.0043 15 7 2.3946 -8.6223 0.0046 16 6 1.6992 -9.8320 -0.1056 17 6 2.1700 -10.9666 0.5424 18 6 1.4826 -12.1593 0.4319 19 6 0.3250 -12.2252 -0.3233 20 17 -0.5404 -13.7243 -0.4541 21 6 -0.1476 -11.0954 -0.9698 22 17 -1.6006 -11.1813 -1.9159 23 6 0.5364 -9.8991 -0.8613 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6240 -2.5566 0.8904 27 1 2.8712 -3.6040 0.8922 28 1 2.8725 -3.6047 -0.8878 29 1 0.8538 -5.0455 -0.8877 30 1 0.8531 -5.0442 0.8922 31 1 3.1009 -6.0918 0.8930 32 1 3.1010 -6.0928 -0.8868 33 1 3.3616 -8.6241 0.0812 34 1 3.0731 -10.9161 1.1326 35 1 1.8486 -13.0415 0.9363 36 1 0.1680 -9.0180 -1.3659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588147754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:17 Heat of formation + Delta-G solvation = -68.455707 kcal Electronic energy + Delta-G solvation = -20073.274294 eV Core-core repulsion = 16607.307717 eV Total energy + Delta-G solvation = -3465.966578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.73769 -39.90195 -37.72880 -37.56884 -36.65016 -35.70117 -34.62145 -32.08226 -31.79924 -30.31259 -27.48082 -24.91369 -24.18602 -23.22849 -21.77428 -21.34451 -19.15941 -18.41019 -18.11204 -17.74697 -17.12447 -16.54811 -16.46030 -16.01027 -15.57757 -15.14995 -15.06042 -14.79971 -14.52934 -13.83990 -13.69990 -13.60635 -13.27062 -13.17319 -12.94931 -12.80155 -12.69059 -12.37749 -12.19687 -12.14821 -12.10982 -11.92641 -11.37993 -11.35393 -11.24398 -11.15692 -10.84799 -10.53725 -10.01535 -9.23736 -8.18048 -6.30149 -0.21855 0.00894 0.77796 1.13828 1.40920 1.44715 1.47650 1.52545 1.93957 2.42202 2.42715 3.14713 3.54433 3.69144 3.95595 3.98041 4.10558 4.11698 4.16481 4.50668 4.65483 4.69665 4.72189 4.85410 4.87637 4.94642 5.03374 5.15917 5.19846 5.34519 5.39839 5.57839 5.64025 5.79593 5.89426 6.25837 6.33806 6.88730 7.06730 7.39508 8.93874 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.032439 B = 0.002014 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.956803 B =13900.529106 C =14604.356595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.099 4.099 12 C -0.124 4.124 13 C 0.512 3.488 14 O -0.560 6.560 15 N -0.658 5.658 16 C 0.160 3.840 17 C -0.115 4.115 18 C -0.070 4.070 19 C -0.061 4.061 20 Cl -0.053 7.053 21 C -0.026 4.026 22 Cl -0.059 7.059 23 C -0.128 4.128 24 H 0.262 0.738 25 H -0.017 1.017 26 H -0.016 1.016 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.437 0.563 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.542 -30.077 0.528 31.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.137 4.137 12 C -0.164 4.164 13 C 0.302 3.698 14 O -0.437 6.437 15 N -0.306 5.306 16 C 0.064 3.936 17 C -0.135 4.135 18 C -0.089 4.089 19 C -0.089 4.089 20 Cl -0.024 7.024 21 C -0.054 4.054 22 Cl -0.030 7.030 23 C -0.149 4.149 24 H 0.071 0.929 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.278 0.722 34 H 0.201 0.799 35 H 0.196 0.804 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.367 -30.022 0.416 31.169 hybrid contribution -0.437 1.059 -0.301 1.185 sum 7.930 -28.963 0.115 30.029 Atomic orbital electron populations 1.70128 1.08082 1.27776 1.51888 1.26106 0.95781 1.03784 0.94875 0.85444 0.78160 0.77723 0.79370 1.18903 1.21261 1.18834 1.21738 0.93783 0.92204 1.50186 0.91445 1.19066 0.94755 0.93910 0.94247 1.21442 0.97770 0.92584 1.01510 1.21272 0.97571 0.93695 1.01166 1.21704 0.98890 0.88205 1.07565 1.21549 0.88001 0.86522 0.73690 1.90759 1.16370 1.87886 1.48690 1.43520 1.11961 1.02721 1.72395 1.17849 0.93141 0.87325 0.95275 1.21367 1.02888 0.90012 0.99207 1.21230 0.91438 0.99950 0.96292 1.20932 0.97386 0.87047 1.03572 1.98384 1.76243 1.30638 1.97104 1.20669 0.91461 0.94205 0.99075 1.98389 1.35301 1.98524 1.70757 1.20960 0.96875 0.96505 1.00553 0.92906 0.99840 0.99784 0.91814 0.91928 0.93858 0.93742 0.85324 0.85533 0.72194 0.79905 0.80433 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.83 13.29 21.45 0.28 -58.55 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.02 16 3 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 9 C 0.02 0.93 4.97 29.85 0.15 1.08 16 10 C -0.10 -3.68 5.15 30.59 0.16 -3.52 16 11 C -0.10 -3.28 4.50 30.59 0.14 -3.14 16 12 C -0.12 -2.49 5.70 29.85 0.17 -2.32 16 13 C 0.51 11.64 7.57 87.66 0.66 12.31 16 14 O -0.56 -18.73 13.66 -3.06 -0.04 -18.77 16 15 N -0.66 -9.33 5.34 -303.49 -1.62 -10.95 16 16 C 0.16 2.71 6.28 38.14 0.24 2.95 16 17 C -0.11 -1.15 9.96 22.39 0.22 -0.93 16 18 C -0.07 -0.78 9.82 22.27 0.22 -0.57 16 19 C -0.06 -1.07 6.32 22.36 0.14 -0.93 16 20 Cl -0.05 -0.89 27.95 -2.72 -0.08 -0.97 16 21 C -0.03 -0.57 6.32 22.33 0.14 -0.43 16 22 Cl -0.06 -1.37 27.95 -2.72 -0.08 -1.45 16 23 C -0.13 -2.97 8.44 22.41 0.19 -2.78 16 24 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 26 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 27 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 30 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 31 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.44 2.16 8.82 -92.71 -0.82 1.34 16 34 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 35 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.13 3.68 6.41 -2.91 -0.02 3.66 16 Total: -1.00 -77.24 341.10 3.91 -73.33 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: 0.29 Total: -0.07 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 3.13 Total: -28.95 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -1.34 Total: -69.50 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.04 Total: -18.77 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.15 Total: -2.42 kcal Total: -77.24 3.91 -73.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.875 kcal (2) G-P(sol) polarization free energy of solvation -77.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds