Wall clock time and date at job start Tue Mar 31 2020 11:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46805 * 2 1 4 4 C 1.50695 * 109.47213 * 239.99794 * 2 1 3 5 5 H 1.08007 * 120.00086 * 240.00061 * 4 2 1 6 6 C 1.37880 * 120.00343 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99426 * 0.02562 * 6 4 2 8 8 Si 1.86790 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47469 * 0.02562 * 8 6 4 10 10 H 1.48511 * 109.46996 * 120.00423 * 8 6 4 11 11 H 1.48498 * 109.47232 * 240.00056 * 8 6 4 12 12 N 1.46500 * 109.47289 * 119.99531 * 2 1 3 13 13 S 1.65603 * 120.00313 * 265.00543 * 12 2 1 14 14 O 1.42105 * 106.39919 * 311.45788 * 13 12 2 15 15 O 1.42092 * 106.40351 * 178.54193 * 13 12 2 16 16 C 1.76200 * 107.21947 * 64.99474 * 13 12 2 17 17 C 1.32561 * 119.99699 * 117.82433 * 16 13 12 18 18 C 1.47814 * 120.00341 * 17.16227 * 17 16 13 19 19 C 1.39566 * 120.13414 * 43.58067 * 18 17 16 20 20 C 1.37951 * 119.88347 * 179.97438 * 19 18 17 21 21 C 1.38350 * 120.15857 * 0.02562 * 20 19 18 22 22 C 1.38443 * 120.26970 * 359.71809 * 21 20 19 23 23 Cl 1.73591 * 119.94182 * 180.30386 * 22 21 20 24 24 C 1.38120 * 120.11244 * 0.56380 * 22 21 20 25 25 H 1.09000 * 109.46537 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47187 * 300.00160 * 1 2 3 27 27 H 1.08994 * 109.47089 * 60.00072 * 1 2 3 28 28 H 0.97005 * 119.99819 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00269 * 84.99705 * 12 2 1 30 30 H 1.08001 * 119.99825 * 297.82350 * 16 13 12 31 31 H 1.08003 * 119.99922 * 197.16163 * 17 16 13 32 32 H 1.08000 * 120.05785 * 0.02562 * 19 18 17 33 33 H 1.08002 * 119.92560 * 180.02562 * 20 19 18 34 34 H 1.07998 * 119.86306 * 180.02562 * 21 20 19 35 35 H 1.07996 * 120.07512 * 179.71994 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1476 -2.2864 -3.6036 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 7 2.0184 -0.6905 1.1962 13 16 2.4122 0.1773 2.5506 14 8 3.2437 1.2445 2.1156 15 8 2.8125 -0.7695 3.5315 16 6 0.9275 0.9149 3.1474 17 6 0.4672 0.5987 4.3496 18 6 1.3561 -0.0552 5.3330 19 6 2.6648 0.3983 5.5048 20 6 3.4898 -0.2154 6.4244 21 6 3.0231 -1.2792 7.1758 22 6 1.7244 -1.7310 7.0144 23 17 1.1452 -3.0614 7.9673 24 6 0.8906 -1.1285 6.0927 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 0.7095 1.1616 -3.4845 29 1 2.1111 -1.6560 1.1951 30 1 0.3926 1.6246 2.5337 31 1 -0.5575 0.8189 4.6106 32 1 3.0306 1.2289 4.9194 33 1 4.5025 0.1353 6.5582 34 1 3.6729 -1.7560 7.8947 35 1 -0.1209 -1.4844 5.9642 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588481041.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:29 Heat of formation + Delta-G solvation = -27.318670 kcal Electronic energy + Delta-G solvation = -21726.723623 eV Core-core repulsion = 18264.584588 eV Total energy + Delta-G solvation = -3462.139036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.54152 -36.86572 -36.43019 -35.51339 -35.32679 -34.33752 -32.23435 -30.93790 -29.62399 -28.36704 -25.32574 -23.79526 -22.77507 -21.07095 -20.87056 -18.59607 -17.87784 -17.18373 -16.29533 -16.06045 -15.61700 -15.34324 -15.04074 -14.64838 -14.29911 -13.89175 -13.64773 -13.52956 -13.11002 -12.70837 -12.29789 -12.01674 -11.81549 -11.77920 -11.60824 -11.45990 -11.23606 -11.13573 -11.02036 -11.01883 -10.74885 -10.53604 -10.40431 -10.12901 -10.11657 -9.24944 -8.85973 -8.68483 -8.43124 -8.34108 -6.16980 -4.24037 0.52323 1.06680 1.20146 1.78666 2.04235 3.23532 3.31730 3.35580 3.58494 3.71397 4.21663 4.33315 4.37440 4.70112 4.86220 4.98561 4.99550 5.16062 5.24856 5.36137 5.60411 5.69529 5.90845 5.97673 6.14176 6.25288 6.29865 6.32661 6.68150 6.69342 6.73607 6.92569 7.50936 7.60640 7.81649 7.95127 8.21209 8.78887 9.42133 10.89523 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.025683 B = 0.003386 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.946172 B = 8267.102820 C = 8459.574256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.520 4.520 5 H 0.066 0.934 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 N -1.095 6.095 13 S 2.667 3.333 14 O -0.967 6.967 15 O -0.969 6.969 16 C -0.729 4.729 17 C 0.038 3.962 18 C -0.076 4.076 19 C -0.048 4.048 20 C -0.105 4.105 21 C -0.093 4.093 22 C -0.043 4.043 23 Cl -0.078 7.078 24 C -0.079 4.079 25 H 0.036 0.964 26 H 0.012 0.988 27 H 0.096 0.904 28 H 0.264 0.736 29 H 0.410 0.590 30 H 0.168 0.832 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.095 -2.120 18.064 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.159 3.841 3 H 0.070 0.930 4 C -0.560 4.560 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.857 5.857 13 S 2.756 3.244 14 O -0.957 6.957 15 O -0.959 6.959 16 C -0.834 4.834 17 C 0.018 3.982 18 C -0.077 4.077 19 C -0.068 4.068 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.069 4.069 23 Cl -0.049 7.049 24 C -0.098 4.098 25 H 0.055 0.945 26 H 0.031 0.969 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.185 0.815 31 H 0.152 0.848 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.452 -1.798 18.354 18.448 hybrid contribution -0.741 -0.754 -1.046 1.487 sum -1.193 -2.551 17.308 17.535 Atomic orbital electron populations 1.22353 0.98653 1.00201 1.00909 1.18686 0.90773 0.93283 0.81318 0.92999 1.21244 1.31881 1.13173 0.89716 0.91600 1.24928 0.94855 0.95028 0.99159 1.69867 1.36322 1.22614 1.23917 0.86366 0.78626 0.79613 0.82369 1.19640 1.20906 1.20794 1.55460 1.83861 1.19124 1.27218 1.02477 0.74678 0.74371 0.72828 1.93586 1.64050 1.56521 1.81539 1.93679 1.81290 1.62549 1.58381 1.34204 1.29102 1.13313 1.06737 1.21646 0.97805 0.87819 0.90909 1.18997 0.94156 0.97046 0.97469 1.21171 0.91850 0.98212 0.95517 1.20853 0.99769 0.95736 0.95993 1.21060 0.93695 0.96601 0.99862 1.20668 0.95206 0.93368 0.97667 1.98356 1.88956 1.46403 1.71211 1.20910 0.99776 0.94976 0.94141 0.94500 0.96907 0.88594 0.92571 0.75587 0.81466 0.84802 0.86420 0.84769 0.85022 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.29 37.16 0.35 -3.22 16 2 C 0.26 6.27 2.89 -69.08 -0.20 6.07 16 3 H 0.05 1.36 7.50 -51.93 -0.39 0.97 16 4 C -0.52 -13.61 8.76 -34.44 -0.30 -13.91 16 5 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.09 11.32 55.43 0.63 -23.46 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -1.10 -21.80 5.46 -5.88 -0.03 -21.83 16 13 S 2.67 48.50 4.72 -107.50 -0.51 47.99 16 14 O -0.97 -21.10 17.36 -57.17 -0.99 -22.09 16 15 O -0.97 -17.24 12.90 -57.17 -0.74 -17.98 16 16 C -0.73 -11.06 9.23 28.82 0.27 -10.79 16 17 C 0.04 0.49 9.73 -37.57 -0.37 0.12 16 18 C -0.08 -1.02 4.05 -105.02 -0.42 -1.44 16 19 C -0.05 -0.66 6.34 -39.19 -0.25 -0.91 16 20 C -0.11 -1.26 10.03 -39.64 -0.40 -1.65 16 21 C -0.09 -1.06 9.82 -39.46 -0.39 -1.45 16 22 C -0.04 -0.51 6.31 -39.55 -0.25 -0.76 16 23 Cl -0.08 -0.84 28.95 -51.86 -1.50 -2.34 16 24 C -0.08 -0.98 9.57 -39.16 -0.37 -1.36 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.01 0.23 6.46 -51.93 -0.34 -0.11 16 27 H 0.10 2.34 6.07 -51.93 -0.32 2.02 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.41 7.45 8.83 -34.47 -0.30 7.15 16 30 H 0.17 2.45 7.32 -52.49 -0.38 2.06 16 31 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 32 H 0.12 1.57 7.19 -52.49 -0.38 1.19 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -30.52 322.77 -9.50 -40.02 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -3.77 Total: 7.10 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -2.43 Total: -27.74 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.60 Total: -45.29 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -1.73 Total: -40.07 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 48.50 SS G_CDS: -0.51 Total: 47.99 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.52 -9.50 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588481041.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.697 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds