Wall clock time and date at job start Tue Mar 31 2020 11:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46805 * 2 1 4 4 C 1.50695 * 109.47213 * 239.99794 * 2 1 3 5 5 H 1.08007 * 120.00086 * 240.00061 * 4 2 1 6 6 C 1.37880 * 120.00343 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99426 * 0.02562 * 6 4 2 8 8 Si 1.86790 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47469 * 0.02562 * 8 6 4 10 10 H 1.48511 * 109.46996 * 120.00423 * 8 6 4 11 11 H 1.48498 * 109.47232 * 240.00056 * 8 6 4 12 12 N 1.46500 * 109.47289 * 119.99531 * 2 1 3 13 13 S 1.65603 * 120.00313 * 265.00543 * 12 2 1 14 14 O 1.42105 * 106.39919 * 311.45788 * 13 12 2 15 15 O 1.42092 * 106.40351 * 178.54193 * 13 12 2 16 16 C 1.76200 * 107.21947 * 64.99474 * 13 12 2 17 17 C 1.32561 * 119.99699 * 117.82433 * 16 13 12 18 18 C 1.47814 * 120.00341 * 17.16227 * 17 16 13 19 19 C 1.39566 * 120.13414 * 43.58067 * 18 17 16 20 20 C 1.37951 * 119.88347 * 179.97438 * 19 18 17 21 21 C 1.38350 * 120.15857 * 0.02562 * 20 19 18 22 22 C 1.38443 * 120.26970 * 359.71809 * 21 20 19 23 23 Cl 1.73591 * 119.94182 * 180.30386 * 22 21 20 24 24 C 1.38120 * 120.11244 * 0.56380 * 22 21 20 25 25 H 1.09000 * 109.46537 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47187 * 300.00160 * 1 2 3 27 27 H 1.08994 * 109.47089 * 60.00072 * 1 2 3 28 28 H 0.97005 * 119.99819 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00269 * 84.99705 * 12 2 1 30 30 H 1.08001 * 119.99825 * 297.82350 * 16 13 12 31 31 H 1.08003 * 119.99922 * 197.16163 * 17 16 13 32 32 H 1.08000 * 120.05785 * 0.02562 * 19 18 17 33 33 H 1.08002 * 119.92560 * 180.02562 * 20 19 18 34 34 H 1.07998 * 119.86306 * 180.02562 * 21 20 19 35 35 H 1.07996 * 120.07512 * 179.71994 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1476 -2.2864 -3.6036 10 1 1.1678 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 7 2.0184 -0.6905 1.1962 13 16 2.4122 0.1773 2.5506 14 8 3.2437 1.2445 2.1156 15 8 2.8125 -0.7695 3.5315 16 6 0.9275 0.9149 3.1474 17 6 0.4672 0.5987 4.3496 18 6 1.3561 -0.0552 5.3330 19 6 2.6648 0.3983 5.5048 20 6 3.4898 -0.2154 6.4244 21 6 3.0231 -1.2792 7.1758 22 6 1.7244 -1.7310 7.0144 23 17 1.1452 -3.0614 7.9673 24 6 0.8906 -1.1285 6.0927 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 0.7095 1.1616 -3.4845 29 1 2.1111 -1.6560 1.1951 30 1 0.3926 1.6246 2.5337 31 1 -0.5575 0.8189 4.6106 32 1 3.0306 1.2289 4.9194 33 1 4.5025 0.1353 6.5582 34 1 3.6729 -1.7560 7.8947 35 1 -0.1209 -1.4844 5.9642 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588481041.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:29 Heat of formation + Delta-G solvation = -46.900625 kcal Electronic energy + Delta-G solvation = -21727.572760 eV Core-core repulsion = 18264.584588 eV Total energy + Delta-G solvation = -3462.988173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.50468 -38.17526 -37.50394 -37.26670 -36.79604 -35.39991 -34.13455 -31.87377 -30.62766 -30.11970 -27.27195 -24.84891 -23.71830 -22.82174 -22.04399 -20.02960 -19.28809 -18.60044 -17.65836 -17.38250 -17.07383 -16.56348 -16.37580 -16.04917 -15.41479 -15.34047 -14.82352 -14.63631 -14.41400 -14.08361 -13.98534 -13.51719 -13.29698 -13.07078 -12.96372 -12.83926 -12.74825 -12.60627 -12.45267 -12.27499 -12.17849 -12.03798 -11.90235 -11.74141 -11.28784 -11.05524 -10.60740 -10.10288 -9.81124 -9.42678 -8.15788 -6.29597 -0.62379 -0.21712 0.25198 0.76559 1.14060 1.43842 1.46428 1.57277 2.23461 2.45075 2.62767 2.85585 3.14278 3.36884 3.60599 3.82575 3.92264 4.11388 4.30937 4.39275 4.53471 4.63851 4.72742 4.89631 4.91194 4.94799 5.03111 5.13454 5.21404 5.24557 5.37610 5.57798 5.75921 5.76551 6.03686 6.11618 6.40946 6.80791 7.39869 8.90002 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.025683 B = 0.003386 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.946172 B = 8267.102820 C = 8459.574256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.266 3.734 3 H 0.020 0.980 4 C -0.543 4.543 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.963 3.037 9 H -0.268 1.268 10 H -0.276 1.276 11 H -0.282 1.282 12 N -1.100 6.100 13 S 2.676 3.324 14 O -1.014 7.014 15 O -0.967 6.967 16 C -0.751 4.751 17 C 0.074 3.926 18 C -0.099 4.099 19 C -0.073 4.073 20 C -0.113 4.113 21 C -0.092 4.092 22 C -0.053 4.053 23 Cl -0.067 7.067 24 C -0.081 4.081 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.266 0.734 29 H 0.416 0.584 30 H 0.173 0.827 31 H 0.177 0.823 32 H 0.111 0.889 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -3.231 19.578 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.161 3.839 3 H 0.038 0.962 4 C -0.582 4.582 5 H 0.082 0.918 6 C -0.184 4.184 7 N -0.552 5.552 8 Si 0.788 3.212 9 H -0.192 1.192 10 H -0.201 1.201 11 H -0.208 1.208 12 N -0.860 5.860 13 S 2.771 3.229 14 O -1.004 7.004 15 O -0.958 6.958 16 C -0.860 4.860 17 C 0.054 3.946 18 C -0.100 4.100 19 C -0.092 4.092 20 C -0.131 4.131 21 C -0.110 4.110 22 C -0.080 4.080 23 Cl -0.038 7.038 24 C -0.100 4.100 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.251 0.749 30 H 0.191 0.809 31 H 0.194 0.806 32 H 0.129 0.871 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.199 -2.943 19.856 20.109 hybrid contribution -0.486 -0.440 -1.278 1.436 sum -1.685 -3.383 18.578 18.959 Atomic orbital electron populations 1.22185 0.97243 1.00604 1.01191 1.18391 0.91818 0.91670 0.82037 0.96224 1.21621 1.32081 1.13394 0.91145 0.91785 1.25691 0.95077 0.95730 1.01876 1.69980 1.37061 1.23619 1.24556 0.85438 0.78224 0.78556 0.78993 1.19194 1.20118 1.20822 1.55289 1.84100 1.19430 1.27179 1.01874 0.75180 0.73698 0.72181 1.93523 1.66742 1.57804 1.82341 1.93682 1.81963 1.62692 1.57427 1.33590 1.27860 1.16039 1.08538 1.22092 0.99096 0.84175 0.89189 1.19182 0.94351 0.98123 0.98363 1.21382 0.92572 0.98789 0.96461 1.21189 1.00678 0.95722 0.95511 1.21397 0.93885 0.96040 0.99709 1.20869 0.95576 0.93731 0.97799 1.98361 1.88849 1.45766 1.70836 1.21161 1.00800 0.94425 0.93595 0.93904 0.93855 0.91067 0.92443 0.74914 0.80906 0.80635 0.87059 0.82663 0.82650 0.82773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.72 9.29 71.98 0.67 -6.05 16 2 C 0.27 12.90 2.89 44.25 0.13 13.03 16 3 H 0.02 1.08 7.50 -2.38 -0.02 1.06 16 4 C -0.54 -28.83 8.76 25.60 0.22 -28.61 16 5 H 0.06 3.32 7.81 -2.91 -0.02 3.29 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.91 -50.27 11.32 21.45 0.24 -50.03 16 8 Si 0.96 42.18 29.54 68.60 2.03 44.21 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 N -1.10 -44.20 5.46 -172.51 -0.94 -45.14 16 13 S 2.68 97.93 4.72 -56.49 -0.27 97.66 16 14 O -1.01 -45.87 17.36 -128.00 -2.22 -48.09 16 15 O -0.97 -33.96 12.90 -128.00 -1.65 -35.61 16 16 C -0.75 -21.83 9.23 66.67 0.62 -21.22 16 17 C 0.07 1.70 9.73 23.66 0.23 1.93 16 18 C -0.10 -2.45 4.05 -20.12 -0.08 -2.53 16 19 C -0.07 -1.91 6.34 22.52 0.14 -1.77 16 20 C -0.11 -2.51 10.03 22.23 0.22 -2.29 16 21 C -0.09 -1.87 9.82 22.35 0.22 -1.65 16 22 C -0.05 -1.15 6.31 22.29 0.14 -1.01 16 23 Cl -0.07 -1.28 28.95 -2.72 -0.08 -1.36 16 24 C -0.08 -1.79 9.57 22.54 0.22 -1.57 16 25 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.04 1.59 6.46 -2.39 -0.02 1.57 16 27 H 0.07 3.51 6.07 -2.39 -0.01 3.49 16 28 H 0.27 13.84 8.31 -92.70 -0.77 13.07 16 29 H 0.42 15.20 8.83 -96.75 -0.85 14.35 16 30 H 0.17 4.86 7.32 -2.91 -0.02 4.84 16 31 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 32 H 0.11 2.98 7.19 -2.91 -0.02 2.96 16 33 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 35 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -66.13 322.77 0.55 -65.57 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.27 Total: 23.20 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 3.18 Total: -50.42 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -0.70 Total: -95.17 kcal Atomic # 8 Polarization: -79.83 SS G_CDS: -3.87 Total: -83.70 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 97.93 SS G_CDS: -0.27 Total: 97.66 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -66.13 0.55 -65.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588481041.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.673 kcal (2) G-P(sol) polarization free energy of solvation -66.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds