Wall clock time and date at job start Tue Mar 31 2020 11:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47646 * 2 1 4 4 C 1.50700 * 109.47441 * 120.00146 * 2 1 3 5 5 H 1.07998 * 120.00431 * 120.00098 * 4 2 1 6 6 C 1.37878 * 119.99907 * 299.99954 * 4 2 1 7 7 N 1.31507 * 120.00033 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99842 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47301 * 90.00240 * 8 6 4 10 10 H 1.48503 * 109.46884 * 210.00123 * 8 6 4 11 11 H 1.48497 * 109.47344 * 329.99682 * 8 6 4 12 12 N 1.46503 * 109.47256 * 239.99947 * 2 1 3 13 13 S 1.65595 * 119.99841 * 94.99568 * 12 2 1 14 14 O 1.42101 * 106.40518 * 178.54376 * 13 12 2 15 15 O 1.42104 * 106.40670 * 311.46344 * 13 12 2 16 16 C 1.76203 * 107.21852 * 65.00581 * 13 12 2 17 17 C 1.32564 * 120.00407 * 117.79465 * 16 13 12 18 18 C 1.47820 * 119.99915 * 17.59534 * 17 16 13 19 19 C 1.39560 * 120.13211 * 45.68560 * 18 17 16 20 20 C 1.37956 * 119.88315 * 180.02562 * 19 18 17 21 21 C 1.38347 * 120.15373 * 0.02562 * 20 19 18 22 22 C 1.38435 * 120.27427 * 359.97438 * 21 20 19 23 23 Cl 1.73601 * 119.94343 * 180.02562 * 22 21 20 24 24 C 1.38114 * 120.11454 * 359.76026 * 22 21 20 25 25 H 1.08998 * 109.46978 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46707 * 299.99488 * 1 2 3 27 27 H 1.08996 * 109.47037 * 60.00100 * 1 2 3 28 28 H 0.97007 * 120.00432 * 180.02562 * 7 6 4 29 29 H 0.96995 * 119.99959 * 275.00397 * 12 2 1 30 30 H 1.07997 * 119.99645 * 297.79482 * 16 13 12 31 31 H 1.07996 * 120.00615 * 197.60159 * 17 16 13 32 32 H 1.08003 * 120.05881 * 0.02976 * 19 18 17 33 33 H 1.08001 * 119.92329 * 180.02562 * 20 19 18 34 34 H 1.08000 * 119.85872 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.08128 * 180.25525 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1314 6 6 1.6994 -0.2394 2.4827 7 7 2.1382 -0.8590 3.5564 8 14 0.6260 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9070 11 1 0.8493 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 16 2.4121 0.1772 -2.5505 14 8 2.8776 -0.7634 -3.5086 15 8 1.3246 1.0593 -2.7922 16 6 3.7928 1.1910 -2.1372 17 6 4.9464 1.0300 -2.7701 18 6 4.9887 0.3024 -4.0561 19 6 4.0463 0.5774 -5.0480 20 6 4.0902 -0.1051 -6.2461 21 6 5.0655 -1.0614 -6.4657 22 6 6.0035 -1.3394 -5.4863 23 17 7.2240 -2.5405 -5.7713 24 6 5.9733 -0.6589 -4.2848 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.9036 -0.5279 4.4375 29 1 2.1110 -1.6561 -1.1949 30 1 3.6991 1.9435 -1.3683 31 1 5.8554 1.4304 -2.3462 32 1 3.2840 1.3234 -4.8780 33 1 3.3615 0.1075 -7.0143 34 1 5.0957 -1.5926 -7.4056 35 1 6.7078 -0.8733 -3.5227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588481042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:31 Heat of formation + Delta-G solvation = -41.234407 kcal Electronic energy + Delta-G solvation = -21799.713463 eV Core-core repulsion = 18336.970996 eV Total energy + Delta-G solvation = -3462.742467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49671 -38.23408 -37.53283 -37.40829 -36.81540 -35.40430 -34.26730 -31.87497 -30.98881 -30.59030 -27.13609 -24.88447 -23.70809 -22.90596 -22.09858 -20.12986 -19.37304 -18.53742 -17.84931 -17.53325 -17.23725 -16.62760 -16.37028 -16.06333 -15.47288 -15.31918 -14.97637 -14.80625 -14.51504 -14.16862 -14.12086 -13.97384 -13.61685 -13.28929 -13.03828 -12.95850 -12.75646 -12.62064 -12.50676 -12.23019 -12.10449 -12.00673 -11.79512 -11.48367 -11.28232 -11.20005 -10.85860 -10.26768 -9.82523 -9.46580 -8.32653 -6.39171 -0.64687 -0.23174 0.23863 0.73345 1.13504 1.33980 1.38704 1.47586 2.14462 2.30032 2.61589 2.80647 3.02144 3.35095 3.54163 3.82452 3.93725 4.10955 4.22447 4.31606 4.39021 4.47016 4.63165 4.70377 4.72353 4.86243 4.89495 4.97999 5.19897 5.21790 5.24181 5.36194 5.44859 5.47063 5.76797 6.23489 6.28382 6.67765 7.26616 8.82950 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.003782 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.554523 B = 7401.751549 C = 7966.037483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.245 3.755 3 H 0.045 0.955 4 C -0.529 4.529 5 H 0.053 0.947 6 C 0.025 3.975 7 N -0.937 5.937 8 Si 0.930 3.070 9 H -0.263 1.263 10 H -0.293 1.293 11 H -0.244 1.244 12 N -1.095 6.095 13 S 2.681 3.319 14 O -0.964 6.964 15 O -0.997 6.997 16 C -0.756 4.756 17 C 0.070 3.930 18 C -0.095 4.095 19 C -0.081 4.081 20 C -0.107 4.107 21 C -0.094 4.094 22 C -0.050 4.050 23 Cl -0.069 7.069 24 C -0.087 4.087 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.269 0.731 29 H 0.419 0.581 30 H 0.173 0.827 31 H 0.171 0.829 32 H 0.121 0.879 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.070 3.381 -19.022 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.138 3.862 3 H 0.062 0.938 4 C -0.568 4.568 5 H 0.071 0.929 6 C -0.175 4.175 7 N -0.577 5.577 8 Si 0.756 3.244 9 H -0.189 1.189 10 H -0.221 1.221 11 H -0.167 1.167 12 N -0.854 5.854 13 S 2.774 3.226 14 O -0.955 6.955 15 O -0.987 6.987 16 C -0.865 4.865 17 C 0.050 3.950 18 C -0.096 4.096 19 C -0.100 4.100 20 C -0.125 4.125 21 C -0.113 4.113 22 C -0.077 4.077 23 Cl -0.040 7.040 24 C -0.106 4.106 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.254 0.746 30 H 0.191 0.809 31 H 0.188 0.812 32 H 0.138 0.862 33 H 0.178 0.822 34 H 0.174 0.826 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.727 3.435 -19.644 21.046 hybrid contribution 0.183 0.164 1.457 1.478 sum 6.910 3.599 -18.186 19.785 Atomic orbital electron populations 1.22607 0.97995 1.02318 1.00424 1.18737 0.91401 0.92633 0.83399 0.93753 1.21336 1.31967 1.13588 0.89877 0.92890 1.25661 0.96855 0.99635 0.95333 1.69995 1.46839 1.42125 0.98701 0.86143 0.79782 0.80476 0.77990 1.18857 1.22065 1.16732 1.55207 1.81238 1.19210 1.29773 1.01858 0.74380 0.74024 0.72310 1.93694 1.81576 1.62755 1.57442 1.93530 1.53579 1.67258 1.84379 1.33642 1.17775 1.17986 1.17055 1.22090 0.98169 0.86360 0.88373 1.19185 0.97245 0.98657 0.94508 1.21438 0.95559 0.98744 0.94249 1.21235 0.98597 0.95258 0.97432 1.21414 0.93221 0.97368 0.99280 1.20884 0.94612 0.95564 0.96608 1.98364 1.54064 1.55364 1.96194 1.21151 0.98231 0.94846 0.96359 0.91753 0.93613 0.92007 0.92179 0.74625 0.80915 0.81192 0.86155 0.82206 0.82582 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.24 9.00 71.98 0.65 -6.60 16 2 C 0.25 10.74 2.35 44.25 0.10 10.85 16 3 H 0.04 1.90 6.91 -2.39 -0.02 1.88 16 4 C -0.53 -27.75 9.34 25.60 0.24 -27.51 16 5 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 6 C 0.02 1.34 5.45 84.66 0.46 1.80 16 7 N -0.94 -55.11 13.96 21.45 0.30 -54.81 16 8 Si 0.93 41.65 24.37 68.60 1.67 43.32 16 9 H -0.26 -11.27 6.87 99.48 0.68 -10.59 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.24 -10.05 6.53 99.48 0.65 -9.40 16 12 N -1.09 -40.97 5.46 -172.51 -0.94 -41.91 16 13 S 2.68 89.53 4.78 -56.49 -0.27 89.26 16 14 O -0.96 -31.97 13.07 -128.00 -1.67 -33.64 16 15 O -1.00 -38.17 17.28 -128.00 -2.21 -40.38 16 16 C -0.76 -21.57 9.93 66.67 0.66 -20.90 16 17 C 0.07 1.66 9.72 23.66 0.23 1.89 16 18 C -0.09 -2.36 3.92 -20.12 -0.08 -2.43 16 19 C -0.08 -1.99 6.50 22.52 0.15 -1.85 16 20 C -0.11 -2.22 10.03 22.23 0.22 -1.99 16 21 C -0.09 -1.87 9.82 22.34 0.22 -1.65 16 22 C -0.05 -1.11 6.31 22.29 0.14 -0.97 16 23 Cl -0.07 -1.38 28.95 -2.72 -0.08 -1.46 16 24 C -0.09 -2.02 9.57 22.54 0.22 -1.80 16 25 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.05 1.91 3.27 -2.39 -0.01 1.90 16 27 H 0.06 2.37 7.64 -2.39 -0.02 2.35 16 28 H 0.27 14.85 8.31 -92.70 -0.77 14.07 16 29 H 0.42 14.75 8.83 -96.75 -0.85 13.90 16 30 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16 31 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.12 2.84 7.41 -2.91 -0.02 2.82 16 33 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -65.99 319.17 0.20 -65.79 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.19 Total: 25.00 kcal Atomic # 6 Polarization: -54.38 SS G_CDS: 3.21 Total: -51.17 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -0.64 Total: -96.72 kcal Atomic # 8 Polarization: -70.13 SS G_CDS: -3.88 Total: -74.02 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.67 Total: 43.32 kcal Atomic # 16 Polarization: 89.53 SS G_CDS: -0.27 Total: 89.26 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -65.99 0.20 -65.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588481042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.560 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds