Wall clock time and date at job start Tue Mar 31 2020 11:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99931 * 2 1 4 4 H 1.48503 * 109.46925 * 266.67175 * 3 2 1 5 5 H 1.48497 * 109.47476 * 26.67029 * 3 2 1 6 6 H 1.48503 * 109.47184 * 146.67049 * 3 2 1 7 7 C 1.37876 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00005 * 350.24492 * 7 2 1 9 9 C 1.50701 * 119.99686 * 170.25038 * 7 2 1 10 10 O 1.42893 * 110.27317 * 327.05605 * 9 7 2 11 11 C 1.54597 * 110.30518 * 204.96535 * 9 7 2 12 12 C 1.55196 * 102.80277 * 219.04640 * 11 9 7 13 13 N 1.48531 * 103.23305 * 37.43819 * 12 11 9 14 14 C 1.46904 * 110.99814 * 200.25247 * 13 12 11 15 15 C 1.50695 * 109.47275 * 301.40585 * 14 13 12 16 16 C 1.38329 * 120.01375 * 276.64002 * 15 14 13 17 17 Cl 1.73596 * 120.00783 * 359.97438 * 16 15 14 18 18 C 1.38366 * 119.98289 * 179.69827 * 16 15 14 19 19 C 1.38221 * 120.01497 * 0.59804 * 18 16 15 20 20 C 1.38223 * 120.02509 * 359.67669 * 19 18 16 21 21 C 1.38334 * 120.01358 * 96.91014 * 15 14 13 22 22 Cl 1.73609 * 120.00483 * 359.97438 * 21 15 14 23 23 C 1.47897 * 105.82528 * 320.76720 * 13 12 11 24 24 H 0.97000 * 119.99963 * 0.02562 * 1 2 3 25 25 H 0.96701 * 114.00276 * 295.31933 * 10 9 7 26 26 H 1.08999 * 110.72720 * 337.39258 * 11 9 7 27 27 H 1.09003 * 110.72231 * 100.67144 * 11 9 7 28 28 H 1.09001 * 110.68341 * 278.98937 * 12 11 9 29 29 H 1.09001 * 110.78054 * 155.93216 * 12 11 9 30 30 H 1.08997 * 109.46745 * 61.40819 * 14 13 12 31 31 H 1.08998 * 109.47164 * 181.40791 * 14 13 12 32 32 H 1.08004 * 119.99237 * 180.31898 * 18 16 15 33 33 H 1.07996 * 119.98778 * 179.70081 * 19 18 16 34 34 H 1.07998 * 119.99400 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.91798 * 265.98305 * 23 13 12 36 36 H 1.08996 * 110.08275 * 144.77258 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5671 2.0058 -1.3978 5 1 1.4133 2.6720 0.6284 6 1 3.5098 1.4616 0.7693 7 6 2.0045 -1.1941 -0.0005 8 1 1.4763 -2.1226 0.1575 9 6 3.4952 -1.2034 -0.2216 10 8 3.8710 -0.1470 -1.1073 11 6 3.9444 -2.5680 -0.7927 12 6 5.2869 -2.8235 -0.0572 13 7 5.0327 -2.2955 1.3076 14 6 6.2938 -2.0064 2.0035 15 6 7.1208 -3.2633 2.0875 16 6 6.8888 -4.1778 3.0991 17 17 5.6453 -3.8776 4.2727 18 6 7.6444 -5.3347 3.1720 19 6 8.6389 -5.5708 2.2416 20 6 8.8749 -4.6546 1.2340 21 6 8.1159 -3.5004 1.1564 22 17 8.4120 -2.3501 -0.1098 23 6 4.2356 -1.0637 1.1215 24 1 -0.4850 0.8400 -0.0004 25 1 3.5172 -0.2396 -2.0025 26 1 3.2182 -3.3445 -0.5526 27 1 4.0994 -2.5031 -1.8697 28 1 6.0987 -2.2763 -0.5364 29 1 5.5115 -3.8895 -0.0216 30 1 6.8458 -1.2443 1.4534 31 1 6.0792 -1.6448 3.0091 32 1 7.4599 -6.0513 3.9588 33 1 9.2316 -6.4716 2.3018 34 1 9.6519 -4.8397 0.5070 35 1 4.8944 -0.1957 1.0938 36 1 3.5158 -0.9575 1.9330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:39 Heat of formation + Delta-G solvation = -23.954013 kcal Electronic energy + Delta-G solvation = -22302.450865 eV Core-core repulsion = 18838.414025 eV Total energy + Delta-G solvation = -3464.036840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.95833 -38.42275 -36.80516 -36.27248 -35.40696 -32.44328 -32.17263 -30.78324 -29.57954 -28.15746 -25.73493 -23.88535 -23.00562 -21.94156 -20.43425 -19.51867 -17.45694 -17.13220 -16.35107 -15.87463 -15.49899 -15.01015 -14.83129 -14.45913 -14.21944 -13.79399 -13.50782 -13.19720 -12.82886 -12.43666 -12.37433 -12.19945 -12.07466 -11.71889 -11.60746 -11.38505 -11.21504 -10.87753 -10.85301 -10.68294 -10.65401 -10.43020 -10.09546 -9.94092 -9.14953 -9.02082 -8.85505 -8.57660 -8.32134 -7.79613 -6.09272 -4.16674 0.81118 0.88552 1.79649 2.24581 3.23508 3.50975 3.56134 3.72773 4.37773 4.53555 4.57598 4.65040 4.74940 4.98643 5.15147 5.18647 5.27938 5.35642 5.49471 5.59567 5.84205 5.85889 5.87635 5.96856 6.05270 6.07999 6.22112 6.28015 6.34717 6.57395 6.72405 6.91757 7.20825 7.42049 7.56883 7.65553 8.25979 8.77169 8.96135 9.54593 11.00382 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.004841 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.651310 B = 5782.995826 C = 6611.471742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.942 3.058 4 H -0.292 1.292 5 H -0.325 1.325 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.216 3.784 10 O -0.571 6.571 11 C -0.135 4.135 12 C 0.028 3.972 13 N -0.498 5.498 14 C 0.073 3.927 15 C -0.055 4.055 16 C -0.006 4.006 17 Cl -0.042 7.042 18 C -0.110 4.110 19 C -0.101 4.101 20 C -0.110 4.110 21 C -0.023 4.023 22 Cl -0.053 7.053 23 C 0.054 3.946 24 H 0.264 0.736 25 H 0.370 0.630 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.036 0.964 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.272 -9.993 4.057 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.131 4.131 3 Si 0.776 3.224 4 H -0.219 1.219 5 H -0.256 1.256 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.176 3.824 10 O -0.378 6.378 11 C -0.173 4.173 12 C -0.100 4.100 13 N -0.222 5.222 14 C -0.055 4.055 15 C -0.057 4.057 16 C -0.034 4.034 17 Cl -0.013 7.013 18 C -0.129 4.129 19 C -0.120 4.120 20 C -0.129 4.129 21 C -0.050 4.050 22 Cl -0.023 7.023 23 C -0.074 4.074 24 H 0.073 0.927 25 H 0.218 0.782 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.054 0.946 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.035 -9.924 4.916 22.022 hybrid contribution 0.447 1.304 -0.961 1.681 sum 19.482 -8.620 3.955 21.668 Atomic orbital electron populations 1.69996 1.06791 1.27482 1.48494 1.25101 0.94773 1.00252 0.92997 0.85821 0.78051 0.80643 0.77848 1.21908 1.25599 1.19829 1.21324 0.89662 0.95304 1.51934 0.90295 1.19964 0.94266 0.82463 0.85684 1.86105 1.77096 1.49911 1.24734 1.23149 0.95520 1.00426 0.98214 1.23422 0.98158 0.99122 0.89267 1.64976 1.13162 1.27371 1.16717 1.21353 0.90725 0.91883 1.01531 1.19575 0.95468 0.97509 0.93102 1.20664 0.93541 0.95716 0.93492 1.98405 1.51545 1.95608 1.55746 1.21168 0.95503 0.96040 1.00168 1.21016 0.97646 0.99326 0.94019 1.21092 0.99737 0.92591 0.99460 1.20736 0.98516 0.93220 0.92569 1.98386 1.94884 1.59190 1.49889 1.23289 0.95810 0.88838 0.99439 0.92666 0.78192 0.90552 0.92163 0.93258 0.91867 0.92973 0.89218 0.84411 0.84338 0.84517 0.94556 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.96 55.43 0.77 -26.31 16 2 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 3 Si 0.94 24.02 24.84 -169.99 -4.22 19.80 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 5 H -0.32 -8.47 7.11 56.52 0.40 -8.07 16 6 H -0.27 -6.87 5.90 56.52 0.33 -6.54 16 7 C -0.54 -14.95 8.54 -34.44 -0.29 -15.24 16 8 H 0.08 2.38 7.83 -52.49 -0.41 1.97 16 9 C 0.22 4.97 0.84 -90.41 -0.08 4.89 16 10 O -0.57 -12.84 8.67 -35.23 -0.31 -13.14 16 11 C -0.13 -2.68 6.34 -24.73 -0.16 -2.84 16 12 C 0.03 0.50 5.13 -1.76 -0.01 0.49 16 13 N -0.50 -9.27 5.34 -231.72 -1.24 -10.51 16 14 C 0.07 1.16 4.23 -4.98 -0.02 1.14 16 15 C -0.05 -0.75 4.60 -104.56 -0.48 -1.23 16 16 C -0.01 -0.08 6.31 -39.50 -0.25 -0.33 16 17 Cl -0.04 -0.57 27.44 -51.86 -1.42 -1.99 16 18 C -0.11 -1.08 9.83 -39.54 -0.39 -1.47 16 19 C -0.10 -0.86 10.04 -39.59 -0.40 -1.25 16 20 C -0.11 -1.06 9.83 -39.54 -0.39 -1.45 16 21 C -0.02 -0.28 5.83 -39.50 -0.23 -0.51 16 22 Cl -0.05 -0.67 24.60 -51.86 -1.28 -1.94 16 23 C 0.05 1.17 5.05 -2.75 -0.01 1.15 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.37 7.38 8.99 45.56 0.41 7.79 16 26 H 0.08 1.60 7.71 -51.93 -0.40 1.20 16 27 H 0.06 1.09 8.01 -51.93 -0.42 0.68 16 28 H 0.05 0.85 5.51 -51.93 -0.29 0.56 16 29 H 0.06 1.07 7.94 -51.93 -0.41 0.66 16 30 H 0.05 0.84 6.46 -51.93 -0.34 0.51 16 31 H 0.09 1.40 7.20 -51.93 -0.37 1.03 16 32 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.04 0.80 6.94 -51.93 -0.36 0.44 16 36 H 0.09 2.14 7.68 -51.93 -0.40 1.74 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -30.97 313.73 -9.22 -40.19 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -3.46 Total: 3.88 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.80 Total: -14.69 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.46 Total: -36.83 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.31 Total: -13.14 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.22 Total: 19.80 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -2.70 Total: -3.93 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.97 -9.22 -40.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.235 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds