Wall clock time and date at job start Tue Mar 31 2020 11:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42898 * 110.27034 * 300.41995 * 9 7 2 11 11 C 1.54592 * 110.30890 * 62.50972 * 9 7 2 12 12 C 1.55196 * 102.80300 * 96.98090 * 11 9 7 13 13 N 1.48533 * 103.23367 * 37.43310 * 12 11 9 14 14 C 1.46904 * 110.99848 * 200.25751 * 13 12 11 15 15 C 1.50700 * 109.47186 * 287.39639 * 14 13 12 16 16 C 1.38221 * 119.98829 * 269.73156 * 15 14 13 17 17 C 1.38353 * 120.01476 * 179.72757 * 16 15 14 18 18 Cl 1.73599 * 120.00941 * 180.27000 * 17 16 15 19 19 C 1.38338 * 119.98623 * 0.56172 * 17 16 15 20 20 C 1.38329 * 119.97018 * 359.70562 * 19 17 16 21 21 Cl 1.73606 * 120.00355 * 180.02562 * 20 19 17 22 22 C 1.38217 * 119.98798 * 89.99861 * 15 14 13 23 23 C 1.47899 * 105.82058 * 320.76900 * 13 12 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 0.96704 * 114.00075 * 59.30102 * 10 9 7 26 26 H 1.09002 * 110.72407 * 215.31938 * 11 9 7 27 27 H 1.09000 * 110.72935 * 338.59896 * 11 9 7 28 28 H 1.09001 * 110.68056 * 278.98632 * 12 11 9 29 29 H 1.09004 * 110.78754 * 155.92756 * 12 11 9 30 30 H 1.09000 * 109.46968 * 47.39733 * 14 13 12 31 31 H 1.09002 * 109.47219 * 167.39469 * 14 13 12 32 32 H 1.08004 * 119.99120 * 359.97438 * 16 15 14 33 33 H 1.07997 * 120.01057 * 179.68439 * 19 17 16 34 34 H 1.08003 * 119.99482 * 359.97438 * 22 15 14 35 35 H 1.09002 * 109.91880 * 265.97874 * 23 13 12 36 36 H 1.09002 * 110.08119 * 144.77515 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4106 -2.5909 1.1468 11 6 0.4086 -2.6266 -1.2954 12 6 1.3172 -3.4841 -2.2161 13 7 1.9390 -4.4508 -1.2753 14 6 3.1656 -5.0247 -1.8447 15 6 2.8050 -5.9922 -2.9424 16 6 2.5998 -7.3268 -2.6471 17 6 2.2631 -8.2145 -3.6535 18 17 1.9985 -9.8894 -3.2813 19 6 2.1434 -7.7683 -4.9574 20 6 2.3544 -6.4336 -5.2532 21 17 2.2037 -5.8726 -6.8892 22 6 2.6851 -5.5458 -4.2449 23 6 2.2340 -3.6838 -0.0456 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2438 -1.8821 1.2137 26 1 -0.5313 -3.1402 -1.0932 27 1 0.2266 -1.6462 -1.7357 28 1 2.0785 -2.8648 -2.6904 29 1 0.7243 -4.0057 -2.9675 30 1 3.7848 -4.2261 -2.2532 31 1 3.7174 -5.5494 -1.0646 32 1 2.6983 -7.6760 -1.6298 33 1 1.8857 -8.4619 -5.7441 34 1 2.8494 -4.5036 -4.4758 35 1 3.2592 -3.3147 -0.0750 36 1 2.0916 -4.3144 0.8320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:43 Heat of formation + Delta-G solvation = -36.935676 kcal Electronic energy + Delta-G solvation = -21548.107310 eV Core-core repulsion = 18083.507543 eV Total energy + Delta-G solvation = -3464.599767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83197 -38.23736 -36.89680 -36.49608 -34.93913 -32.18735 -32.12624 -30.77574 -29.29093 -27.86993 -25.75613 -24.12545 -22.92859 -21.68376 -20.31555 -19.42854 -17.38908 -16.95344 -16.11688 -15.87737 -15.47514 -15.02655 -14.54660 -14.35852 -14.12679 -13.76969 -13.44105 -13.08776 -12.62722 -12.49444 -12.41460 -12.14749 -11.86156 -11.54649 -11.30229 -11.22474 -11.15618 -11.07221 -11.00787 -10.79504 -10.58154 -10.49008 -10.35130 -10.03118 -9.20974 -8.98801 -8.85251 -8.63190 -8.14547 -7.83691 -6.25254 -4.35518 0.87420 0.92734 1.65867 2.12660 3.17731 3.26001 3.28032 3.29378 4.24969 4.43127 4.70142 4.82245 4.84937 5.00779 5.06230 5.09889 5.37005 5.55607 5.69653 5.77324 5.86716 5.91218 5.98988 6.04141 6.17180 6.32128 6.37720 6.42469 6.66434 6.92675 7.02895 7.32282 7.39610 7.53883 7.58133 7.76969 8.15795 8.67717 9.33816 9.51989 10.80312 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.003441 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.007291 B = 8135.404797 C = 9124.050459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.246 3.754 10 O -0.589 6.589 11 C -0.127 4.127 12 C 0.039 3.961 13 N -0.512 5.512 14 C 0.080 3.920 15 C -0.036 4.036 16 C -0.086 4.086 17 C -0.024 4.024 18 Cl -0.064 7.064 19 C -0.111 4.111 20 C -0.023 4.023 21 Cl -0.063 7.063 22 C -0.098 4.098 23 C 0.053 3.947 24 H 0.268 0.732 25 H 0.382 0.618 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.045 0.955 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.861 -13.637 -9.968 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.077 0.923 9 C 0.206 3.794 10 O -0.398 6.398 11 C -0.166 4.166 12 C -0.089 4.089 13 N -0.236 5.236 14 C -0.048 4.048 15 C -0.038 4.038 16 C -0.106 4.106 17 C -0.051 4.051 18 Cl -0.035 7.035 19 C -0.130 4.130 20 C -0.050 4.050 21 Cl -0.035 7.035 22 C -0.117 4.117 23 C -0.074 4.074 24 H 0.078 0.922 25 H 0.232 0.768 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.064 0.936 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.694 -14.576 -9.836 18.200 hybrid contribution 0.590 2.003 -0.559 2.161 sum 5.284 -12.573 -10.395 17.148 Atomic orbital electron populations 1.69661 1.05904 1.27516 1.50229 1.25008 0.94983 0.99414 0.93803 0.86497 0.79935 0.82827 0.78188 1.20552 1.20970 1.19797 1.21750 0.93348 0.90835 1.51528 0.92297 1.19340 0.86626 0.90752 0.82652 1.86108 1.51971 1.54531 1.47219 1.23063 0.96874 0.98858 0.97769 1.23250 0.97598 0.92753 0.95275 1.64820 1.21691 1.31927 1.05163 1.21239 0.93019 0.95928 0.94609 1.19755 0.96643 0.93630 0.93737 1.21056 0.98260 0.92083 0.99173 1.20690 1.04267 0.86065 0.94078 1.98377 1.94991 1.15442 1.94714 1.20802 1.02047 0.94464 0.95704 1.20664 1.04387 0.93535 0.86414 1.98381 1.96370 1.89430 1.19272 1.21138 0.99165 1.00049 0.91365 1.22797 0.98274 0.94940 0.91409 0.92209 0.76780 0.93272 0.89847 0.94099 0.91929 0.93117 0.89751 0.84128 0.84194 0.84366 0.93636 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.34 10.38 55.43 0.58 -22.77 16 2 C 0.07 1.81 5.01 -17.82 -0.09 1.72 16 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -13.93 8.23 -34.44 -0.28 -14.21 16 8 H 0.06 1.52 7.34 -52.49 -0.39 1.14 16 9 C 0.25 5.98 0.99 -90.42 -0.09 5.89 16 10 O -0.59 -15.32 12.93 -35.23 -0.46 -15.78 16 11 C -0.13 -2.89 5.89 -24.73 -0.15 -3.04 16 12 C 0.04 0.73 5.68 -1.76 -0.01 0.72 16 13 N -0.51 -9.28 5.23 -231.72 -1.21 -10.50 16 14 C 0.08 1.15 4.86 -4.97 -0.02 1.13 16 15 C -0.04 -0.47 5.16 -104.64 -0.54 -1.01 16 16 C -0.09 -1.04 9.48 -39.55 -0.38 -1.42 16 17 C -0.02 -0.27 6.32 -39.50 -0.25 -0.52 16 18 Cl -0.06 -0.67 28.96 -51.86 -1.50 -2.17 16 19 C -0.11 -1.21 9.62 -39.51 -0.38 -1.59 16 20 C -0.02 -0.27 6.32 -39.50 -0.25 -0.52 16 21 Cl -0.06 -0.69 28.96 -51.86 -1.50 -2.19 16 22 C -0.10 -1.22 8.61 -39.54 -0.34 -1.56 16 23 C 0.05 1.10 6.13 -2.76 -0.02 1.09 16 24 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 25 H 0.38 10.05 7.20 45.56 0.33 10.38 16 26 H 0.05 1.14 8.08 -51.93 -0.42 0.72 16 27 H 0.08 2.07 6.63 -51.93 -0.34 1.72 16 28 H 0.04 0.77 7.81 -51.93 -0.41 0.36 16 29 H 0.06 1.11 7.84 -51.93 -0.41 0.70 16 30 H 0.05 0.72 7.77 -51.93 -0.40 0.32 16 31 H 0.08 1.09 8.02 -51.93 -0.42 0.68 16 32 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.05 0.92 7.02 -51.93 -0.36 0.56 16 36 H 0.07 1.51 7.96 -51.93 -0.41 1.10 16 LS Contribution 327.78 15.07 4.94 4.94 Total: -1.00 -26.25 327.78 -10.61 -36.85 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -3.64 Total: 9.79 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.79 Total: -13.32 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: -0.64 Total: -33.26 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.46 Total: -15.78 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -3.00 Total: -4.36 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.25 -10.61 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.083 kcal (2) G-P(sol) polarization free energy of solvation -26.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds