Wall clock time and date at job start Tue Mar 31 2020 11:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42898 * 110.27034 * 300.41995 * 9 7 2 11 11 C 1.54592 * 110.30890 * 62.50972 * 9 7 2 12 12 C 1.55196 * 102.80300 * 96.98090 * 11 9 7 13 13 N 1.48533 * 103.23367 * 37.43310 * 12 11 9 14 14 C 1.46904 * 110.99848 * 200.25751 * 13 12 11 15 15 C 1.50700 * 109.47186 * 287.39639 * 14 13 12 16 16 C 1.38221 * 119.98829 * 269.73156 * 15 14 13 17 17 C 1.38353 * 120.01476 * 179.72757 * 16 15 14 18 18 Cl 1.73599 * 120.00941 * 180.27000 * 17 16 15 19 19 C 1.38338 * 119.98623 * 0.56172 * 17 16 15 20 20 C 1.38329 * 119.97018 * 359.70562 * 19 17 16 21 21 Cl 1.73606 * 120.00355 * 180.02562 * 20 19 17 22 22 C 1.38217 * 119.98798 * 89.99861 * 15 14 13 23 23 C 1.47899 * 105.82058 * 320.76900 * 13 12 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 0.96704 * 114.00075 * 59.30102 * 10 9 7 26 26 H 1.09002 * 110.72407 * 215.31938 * 11 9 7 27 27 H 1.09000 * 110.72935 * 338.59896 * 11 9 7 28 28 H 1.09001 * 110.68056 * 278.98632 * 12 11 9 29 29 H 1.09004 * 110.78754 * 155.92756 * 12 11 9 30 30 H 1.09000 * 109.46968 * 47.39733 * 14 13 12 31 31 H 1.09002 * 109.47219 * 167.39469 * 14 13 12 32 32 H 1.08004 * 119.99120 * 359.97438 * 16 15 14 33 33 H 1.07997 * 120.01057 * 179.68439 * 19 17 16 34 34 H 1.08003 * 119.99482 * 359.97438 * 22 15 14 35 35 H 1.09002 * 109.91880 * 265.97874 * 23 13 12 36 36 H 1.09002 * 110.08119 * 144.77515 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4106 -2.5909 1.1468 11 6 0.4086 -2.6266 -1.2954 12 6 1.3172 -3.4841 -2.2161 13 7 1.9390 -4.4508 -1.2753 14 6 3.1656 -5.0247 -1.8447 15 6 2.8050 -5.9922 -2.9424 16 6 2.5998 -7.3268 -2.6471 17 6 2.2631 -8.2145 -3.6535 18 17 1.9985 -9.8894 -3.2813 19 6 2.1434 -7.7683 -4.9574 20 6 2.3544 -6.4336 -5.2532 21 17 2.2037 -5.8726 -6.8892 22 6 2.6851 -5.5458 -4.2449 23 6 2.2340 -3.6838 -0.0456 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2438 -1.8821 1.2137 26 1 -0.5313 -3.1402 -1.0932 27 1 0.2266 -1.6462 -1.7357 28 1 2.0785 -2.8648 -2.6904 29 1 0.7243 -4.0057 -2.9675 30 1 3.7848 -4.2261 -2.2532 31 1 3.7174 -5.5494 -1.0646 32 1 2.6983 -7.6760 -1.6298 33 1 1.8857 -8.4619 -5.7441 34 1 2.8494 -4.5036 -4.4758 35 1 3.2592 -3.3147 -0.0750 36 1 2.0916 -4.3144 0.8320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592153392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:42 Heat of formation + Delta-G solvation = -52.288285 kcal Electronic energy + Delta-G solvation = -21548.773049 eV Core-core repulsion = 18083.507543 eV Total energy + Delta-G solvation = -3465.265506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87960 -39.75222 -37.75337 -37.47028 -36.56221 -34.17453 -33.38384 -31.68577 -30.75048 -29.60907 -27.27269 -25.72732 -23.86211 -22.83277 -21.76784 -21.23369 -19.08890 -18.14018 -17.28685 -16.98726 -16.91456 -16.71535 -15.97258 -15.51386 -15.40490 -15.03682 -14.80041 -14.51951 -14.31513 -13.97852 -13.40876 -13.34413 -13.19384 -12.92628 -12.89636 -12.67803 -12.54198 -12.34480 -12.30182 -12.16320 -11.95216 -11.93329 -11.87809 -11.80435 -11.07548 -10.61028 -10.12255 -9.90767 -9.74673 -9.31133 -8.21028 -6.38505 -0.03775 0.00525 0.78767 1.25321 1.39674 1.42997 1.51510 2.32470 2.38539 3.02437 3.23504 3.54177 3.91170 3.94946 4.01589 4.04128 4.10838 4.17034 4.31501 4.48912 4.52653 4.60033 4.70006 4.75156 4.96857 4.97283 5.04839 5.16303 5.25686 5.34717 5.42898 5.49221 5.59264 5.75807 5.84209 6.15555 6.25498 6.69024 7.33546 7.47592 8.83123 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.003441 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.007291 B = 8135.404797 C = 9124.050459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.557 4.557 8 H 0.055 0.945 9 C 0.228 3.772 10 O -0.600 6.600 11 C -0.122 4.122 12 C 0.053 3.947 13 N -0.512 5.512 14 C 0.082 3.918 15 C -0.047 4.047 16 C -0.088 4.088 17 C -0.028 4.028 18 Cl -0.055 7.055 19 C -0.105 4.105 20 C -0.028 4.028 21 Cl -0.057 7.057 22 C -0.103 4.103 23 C 0.061 3.939 24 H 0.269 0.731 25 H 0.375 0.625 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.139 0.861 35 H 0.049 0.951 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.750 -14.464 -10.988 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.170 4.170 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.595 4.595 8 H 0.073 0.927 9 C 0.188 3.812 10 O -0.409 6.409 11 C -0.161 4.161 12 C -0.075 4.075 13 N -0.236 5.236 14 C -0.046 4.046 15 C -0.048 4.048 16 C -0.107 4.107 17 C -0.055 4.055 18 Cl -0.026 7.026 19 C -0.124 4.124 20 C -0.055 4.055 21 Cl -0.028 7.028 22 C -0.122 4.122 23 C -0.066 4.066 24 H 0.079 0.921 25 H 0.225 0.775 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.166 0.834 33 H 0.175 0.825 34 H 0.157 0.843 35 H 0.067 0.933 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.593 -15.420 -10.866 19.676 hybrid contribution 0.294 2.198 -0.265 2.233 sum 5.887 -13.223 -11.132 18.260 Atomic orbital electron populations 1.69751 1.06864 1.28162 1.50265 1.25673 0.95742 1.02189 0.93422 0.85582 0.78684 0.79248 0.78254 1.19979 1.20779 1.19703 1.21982 0.93326 0.92018 1.52135 0.92703 1.19663 0.87184 0.91799 0.82537 1.86103 1.52079 1.54260 1.48434 1.22874 0.96989 0.98164 0.98027 1.23093 0.97080 0.92514 0.94802 1.64777 1.23901 1.30734 1.04220 1.21286 0.91467 0.96294 0.95541 1.19580 0.98088 0.93687 0.93421 1.21161 0.97904 0.91889 0.99790 1.20741 1.04101 0.86525 0.94120 1.98383 1.94907 1.14599 1.94686 1.21018 1.00873 0.94492 0.96043 1.20707 1.04402 0.93741 0.86622 1.98385 1.96329 1.89419 1.18698 1.21192 0.99236 1.00319 0.91468 1.22621 0.97377 0.93885 0.92731 0.92127 0.77517 0.94456 0.92339 0.93883 0.90363 0.92743 0.88203 0.83415 0.82489 0.84296 0.93303 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.12 10.38 21.45 0.22 -47.90 16 2 C 0.03 1.56 5.01 84.66 0.42 1.99 16 3 Si 0.96 41.22 29.54 68.60 2.03 43.24 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.56 -29.06 8.23 25.60 0.21 -28.85 16 8 H 0.05 2.84 7.34 -2.91 -0.02 2.81 16 9 C 0.23 11.16 0.99 -10.66 -0.01 11.15 16 10 O -0.60 -31.82 12.93 -148.98 -1.93 -33.74 16 11 C -0.12 -5.61 5.89 31.89 0.19 -5.42 16 12 C 0.05 1.95 5.68 86.74 0.49 2.45 16 13 N -0.51 -17.96 5.23 -887.02 -4.64 -22.60 16 14 C 0.08 2.20 4.86 85.56 0.42 2.61 16 15 C -0.05 -1.12 5.16 -19.87 -0.10 -1.22 16 16 C -0.09 -1.95 9.48 22.29 0.21 -1.74 16 17 C -0.03 -0.57 6.32 22.32 0.14 -0.43 16 18 Cl -0.05 -1.02 28.96 -2.72 -0.08 -1.10 16 19 C -0.10 -2.05 9.62 22.32 0.21 -1.84 16 20 C -0.03 -0.59 6.32 22.32 0.14 -0.45 16 21 Cl -0.06 -1.14 28.96 -2.72 -0.08 -1.22 16 22 C -0.10 -2.37 8.61 22.29 0.19 -2.18 16 23 C 0.06 2.54 6.13 86.44 0.53 3.07 16 24 H 0.27 13.57 8.31 -92.70 -0.77 12.80 16 25 H 0.38 20.35 7.20 -74.05 -0.53 19.82 16 26 H 0.04 1.76 8.08 -2.39 -0.02 1.74 16 27 H 0.06 2.95 6.63 -2.39 -0.02 2.94 16 28 H 0.04 1.58 7.81 -2.39 -0.02 1.56 16 29 H 0.08 2.66 7.84 -2.38 -0.02 2.64 16 30 H 0.05 1.45 7.77 -2.39 -0.02 1.43 16 31 H 0.10 2.37 8.02 -2.39 -0.02 2.36 16 32 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.05 1.95 7.02 -2.39 -0.02 1.93 16 36 H 0.07 2.81 7.96 -2.39 -0.02 2.79 16 Total: -1.00 -54.97 327.78 -0.85 -55.82 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.58 Total: 28.35 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 3.05 Total: -20.86 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -4.42 Total: -70.50 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.93 Total: -33.74 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.16 Total: -2.32 kcal Total: -54.97 -0.85 -55.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.534 kcal (2) G-P(sol) polarization free energy of solvation -54.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds